Contacts of the strand formed by residues 59 - 90 (chain H) in PDB entry 1C1V
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 59 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33H LEU* 4.5 7.4 - - + -
41H LEU* 5.4 0.2 - - + -
54H THR* 4.1 16.8 - - + -
55H ALA 4.7 0.2 - - - +
56H ALA 2.9 4.4 + - - +
58H CYS* 1.3 92.3 - - + +
60H LEU* 1.3 110.2 + - + +
64H LEU* 3.3 37.2 - - + -
88H ILE* 3.6 31.9 - - + -
90H ILE* 4.2 14.8 - - + -
104H ALA* 4.2 4.7 - - + -
106H MET* 3.8 15.5 - - + -
----------------------------------------------------------
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Residues in contact with LEU 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56H ALA 2.9 9.6 + - - +
57H HIS* 3.5 2.8 - - - -
58H CYS 3.8 0.2 - - - -
59H LEU* 1.3 83.0 - - + +
60H TYR* 1.3 123.8 + - + +
90H ILE* 4.7 18.6 - - + -
94H TYR* 2.7 43.1 + - + -
96H TRP* 5.1 6.3 - - + +
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Residues in contact with TYR 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57H HIS* 4.0 19.3 - - + +
60H LEU* 1.3 274.1 + - + +
94H TYR* 4.0 13.9 - - - +
96H TRP* 4.1 19.1 + - + +
99H LEU* 4.4 11.9 - - - +
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Residues in contact with PRO 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60H TYR* 1.3 241.1 + + + +
96H TRP* 3.5 72.2 - + + +
97H ARG* 5.9 0.2 - - - -
----------------------------------------------------------
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Residues in contact with TRP 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60H PRO* 1.3 219.6 + + + +
410H BAB 3.8 52.3 - - - -
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Residues in contact with ASP 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60H TRP* 1.3 170.8 + - + +
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Residues in contact with LYS 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57H HIS* 3.4 21.9 + - - -
58H CYS* 3.2 24.4 + - - +
59H LEU 3.8 6.3 - - - -
60H ASP* 1.3 236.8 + + + +
410H BAB 2.9 48.0 + + - -
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Residues in contact with ASN 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59H LEU 3.3 5.8 - - - -
60H LYS* 1.3 181.5 - + + +
63H ASP* 4.3 3.1 - - - -
----------------------------------------------------------
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Residues in contact with PHE 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35H ARG* 3.7 37.0 + - - +
41H LEU* 3.6 35.0 - - + +
58H CYS 3.7 17.5 + - - -
59H LEU* 2.9 24.0 - - + +
60H ASN* 1.3 175.0 - + + +
63H ASP* 3.4 22.0 - - + +
64H LEU* 4.1 24.7 - - + -
88H ILE* 4.6 8.3 - - + -
----------------------------------------------------------
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Residues in contact with THR 60 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60H PHE* 1.3 85.2 - - + -
61H GLU* 1.3 81.7 + - - +
62H ASN* 3.2 19.7 + - - +
63H ASP* 2.8 27.2 - - + +
64H LEU* 3.8 6.2 - - + +
88H ILE* 4.2 8.7 - - + +
----------------------------------------------------------
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Residues in contact with GLU 61 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60H THR* 1.3 77.9 + - - +
62H ASN* 1.3 71.0 + - - +
63H ASP 2.9 6.8 + - - -
64H LEU* 3.0 21.5 + - - +
85H LEU* 3.7 36.8 + - - +
86H GLU 3.2 15.6 - - - +
87H LYS* 2.9 41.9 + - - +
88H ILE* 3.3 24.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 62 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36H LYS* 3.2 32.2 + - - +
60H THR* 3.1 14.0 + - - +
61H GLU* 1.3 84.6 - - - +
63H ASP* 1.3 64.4 + - - +
64H LEU 3.4 0.4 - - - -
----------------------------------------------------------
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Residues in contact with ASP 63 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35H ARG* 3.6 12.6 - - + +
36H LYS* 3.3 27.8 + - - -
60H THR* 2.8 70.8 + - + +
62H ASN* 1.3 82.6 - - - +
64H LEU* 1.3 61.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 64 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33H LEU* 5.1 9.0 - - + -
34H PHE 3.2 11.2 - - - +
35H ARG* 5.1 0.7 - - - -
36H LYS* 3.8 6.4 - - - -
41H LEU* 3.4 32.8 - - + -
59H LEU* 3.3 28.9 - - + -
60H THR* 3.9 25.1 - - + -
61H GLU 3.0 10.3 + - - +
63H ASP* 1.3 86.4 - - - +
65H LEU* 1.3 78.0 + - - +
66H VAL* 5.8 0.7 - - + -
83H SER 5.0 0.2 - - - +
84H MET* 5.0 3.3 - - - +
85H LEU* 3.7 22.8 + - + +
88H ILE* 3.7 7.4 - - + -
106H MET* 3.7 17.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 65 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33H LEU* 3.5 4.3 - - - +
34H PHE* 2.7 47.1 + - + +
36H LYS* 3.8 17.9 - - + -
64H LEU* 1.3 85.2 - - - +
66H VAL* 1.3 64.8 + - - +
67H ARG* 5.1 0.9 - - + -
82H ILE* 4.2 15.9 - - + -
83H SER 3.8 13.9 - - - +
84H MET* 4.3 11.4 - - + +
85H LEU* 5.8 0.2 - - - -
59I ILE* 3.6 31.0 - - + -
63I TYS 3.3 28.3 - - - +
64I LEU* 3.7 12.8 - - + -
----------------------------------------------------------
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Residues in contact with VAL 66 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31H VAL* 3.2 26.0 - - + -
32H MET 3.5 3.1 - - - -
33H LEU* 3.7 20.9 - - + -
52H VAL* 4.0 12.6 - - + -
64H LEU* 5.8 0.2 - - + -
65H LEU* 1.3 76.7 - - - +
67H ARG* 1.3 60.5 + - - +
68H ILE* 3.7 19.8 + - + +
81H LYS 3.4 1.7 - - - +
82H ILE* 3.4 4.3 - - - -
83H SER* 3.1 35.0 + - - +
85H LEU* 3.6 32.1 - - + -
106H MET* 4.9 0.9 - - - -
108H LEU* 4.2 10.3 - - + -
----------------------------------------------------------
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Residues in contact with ARG 67 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30H GLN 4.8 0.2 - - - +
31H VAL* 3.7 1.2 - - - -
32H MET* 2.8 45.8 + - + +
34H PHE* 3.2 65.2 - - + -
65H LEU* 4.9 0.7 - - + -
66H VAL* 1.3 76.5 - - - +
68H ILE* 1.3 61.9 - - - +
70H LYS* 3.4 28.1 - - + +
73H ARG 5.0 0.6 + - - -
74H THR 5.3 1.0 - - - -
75H ARG 3.6 23.0 + - - +
76H TYR* 3.8 11.3 - - - +
80H GLU* 2.9 28.5 + - - +
81H LYS 3.4 4.7 - - - -
82H ILE* 4.0 16.5 - - + +
141H TRP* 5.3 0.3 - - - -
56I PHE* 4.2 10.7 - - - +
57I GLU 5.2 1.0 + - - -
59I ILE* 3.9 16.9 - - - +
----------------------------------------------------------
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Residues in contact with ILE 68 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28H PRO 4.5 7.0 - - - +
30H GLN 4.3 6.5 - - - +
31H VAL* 4.2 19.1 - - + -
46H LEU* 4.4 15.0 - - + -
52H VAL* 4.9 0.7 - - + -
66H VAL* 3.7 27.1 - - + +
67H ARG* 1.3 77.6 - - - +
69H GLY* 1.3 62.4 + - - +
70H LYS 3.3 2.7 - - - -
80H GLU* 3.0 6.1 - - - +
81H LYS* 2.9 37.1 + - + +
83H SER* 4.9 4.9 - - - +
108H LEU* 4.5 11.4 - - + -
112H VAL* 4.3 27.1 - - + -
118H ILE* 3.9 29.5 - - + +
----------------------------------------------------------
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Residues in contact with GLY 69 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28H PRO 5.1 0.6 + - - -
30H GLN 4.5 5.5 + - - -
68H ILE* 1.3 80.3 - - - +
70H LYS* 1.3 65.6 + - - +
71H HIS* 3.9 1.4 + - - +
77H GLU* 4.4 1.7 - - - +
79H ILE* 3.5 23.7 - - - +
80H GLU* 4.1 7.2 - - - +
117H TYR* 3.7 27.9 + - - +
118H ILE* 3.8 9.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 70 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30H GLN* 5.3 3.4 + - - +
32H MET* 3.6 15.7 - - + -
67H ARG* 3.4 43.5 - - + +
68H ILE* 4.4 0.4 - - - +
69H GLY* 1.3 83.5 - - - +
71H HIS* 1.3 62.6 + - - +
72H SER 3.0 13.5 + - - -
73H ARG 3.5 15.8 + - - -
75H ARG 2.8 23.0 + - - -
77H GLU* 2.7 31.0 + - - -
80H GLU* 3.1 26.3 + - + +
141H TRP* 3.7 26.7 - - + -
160H LEU* 5.2 4.7 - - - +
----------------------------------------------------------
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Residues in contact with HIS 71 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22H ALA* 3.6 26.7 + - + +
23H GLU 4.0 12.7 + - - -
24H ILE* 3.4 35.9 - - + +
69H GLY 5.1 0.9 - - - +
70H LYS* 1.3 76.7 - - - +
72H SER* 1.3 65.9 + - - +
77H GLU* 3.2 12.0 + - - +
141H TRP* 3.0 11.0 + - - -
159H VAL* 3.2 40.9 - - + +
160H LEU* 2.9 36.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 72 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70H LYS* 3.0 27.4 + - - +
71H HIS* 1.3 85.6 + - - +
73H ARG* 1.3 61.3 + - - +
74H THR* 4.0 2.4 + - - -
75H ARG* 3.6 30.5 + - - +
77H GLU* 3.0 17.6 + - - +
141H TRP* 4.0 0.9 + - - -
158H SER* 3.3 14.3 + - - -
159H VAL* 4.4 5.8 - - - +
----------------------------------------------------------
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Residues in contact with ARG 73 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32H MET* 3.2 27.2 - - + +
40H LEU* 4.3 6.7 - - + -
67H ARG* 4.7 0.9 + - - -
70H LYS* 3.5 9.0 - - - -
71H HIS 3.6 0.8 + - - -
72H SER* 1.3 74.4 + - - +
74H THR* 1.3 74.4 + - - +
141H TRP* 3.6 46.9 - - + -
156H GLN* 3.6 36.5 + - - +
157H PRO* 2.8 37.0 + - - +
158H SER* 3.0 9.6 + - - +
55I ASP* 2.9 30.2 + - - -
56I PHE* 3.3 29.8 - - + -
----------------------------------------------------------
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Residues in contact with THR 74 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67H ARG* 5.3 1.5 + - - -
72H SER* 4.2 2.8 + - - -
73H ARG* 1.3 96.5 + - - +
75H ARG* 1.3 81.0 + - - +
158H SER* 5.2 3.1 + - - -
55I ASP* 3.1 51.1 - - - +
56I PHE* 3.6 14.8 - - + -
57I GLU* 2.8 31.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 75 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67H ARG* 3.6 4.0 + - - -
70H LYS* 2.8 29.0 + - - +
72H SER* 3.6 22.7 + - - +
73H ARG 3.6 1.8 - - - -
74H THR* 1.3 103.7 + - - +
76H TYR* 1.3 63.0 + - - +
77H GLU* 3.1 10.6 + - + +
55I ASP* 3.0 33.7 + - - -
56I PHE 3.8 1.4 + - - -
57I GLU* 3.6 29.5 - - - +
----------------------------------------------------------
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Residues in contact with TYR 76 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67H ARG* 3.8 10.1 - - - +
75H ARG* 1.3 70.7 - - - +
77H GLU* 1.3 98.8 + - - +
78H ASN 5.1 2.5 + - - -
80H GLU* 4.0 15.7 + - + -
82H ILE* 3.7 20.9 - - + -
57I GLU* 3.3 28.9 + - + +
58I GLU 4.0 13.5 - - - +
59I ILE* 4.4 3.6 - - + -
60I PRO* 3.4 44.2 - - + +
63I TYS 2.8 37.3 + - - -
----------------------------------------------------------
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Residues in contact with GLU 77 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69H GLY 4.4 3.1 - - - +
70H LYS* 2.7 29.0 + - - -
71H HIS* 3.2 24.9 + - - +
72H SER* 3.0 32.2 + - - +
75H ARG* 3.1 12.0 + - + +
76H TYR* 1.3 67.1 - - - +
77H ARG* 1.3 56.9 + - - +
79H ILE* 2.8 48.0 + - + +
80H GLU* 3.1 24.4 + - + +
----------------------------------------------------------
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Residues in contact with ARG 77 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76H TYR* 2.8 35.7 + - - -
77H GLU* 1.3 71.6 - - - +
78H ASN* 1.3 88.9 + - - +
79H ILE* 3.0 11.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 78 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76H TYR* 5.1 3.2 + - - -
77H ARG* 1.3 95.1 + - - +
79H ILE* 1.3 63.4 + - + +
80H GLU 4.8 2.4 + - - +
81H LYS* 3.9 19.3 + - - +
117H TYR* 5.8 0.7 - - - -
63I TYS 6.0 0.2 + - - -
----------------------------------------------------------
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Residues in contact with ILE 79 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69H GLY* 3.5 21.7 - - - +
77H GLU* 2.8 37.1 + - + +
78H ASN* 1.3 86.3 - - + +
80H GLU* 1.3 61.8 + - - +
81H LYS* 4.4 4.0 + - - +
115H SER* 5.2 0.9 + - - -
117H TYR* 3.8 44.5 - - + +
118H ILE* 4.2 13.5 - - - +
----------------------------------------------------------
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Residues in contact with GLU 80 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67H ARG* 2.9 36.1 + - - +
68H ILE 3.0 15.9 - - - +
69H GLY* 4.1 4.9 - - - +
70H LYS* 3.1 39.0 + - + +
75H ARG 3.7 0.2 - - - +
76H TYR* 4.0 21.0 + - + -
77H GLU* 3.1 27.7 + - + +
78H ASN 4.7 2.3 + - - -
79H ILE* 1.3 82.7 + - - +
81H LYS* 1.3 75.6 + - - +
82H ILE* 3.6 12.0 - - + +
63I TYS 4.0 8.7 + - - -
----------------------------------------------------------
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Residues in contact with LYS 81 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66H VAL 3.4 1.4 - - - +
67H ARG* 3.4 2.9 - - - -
68H ILE* 2.9 34.4 + - + +
78H ASN* 3.9 24.5 + - - +
79H ILE 4.4 2.6 + - - +
80H GLU* 1.3 86.2 + - - +
82H ILE* 1.3 66.3 - - - +
83H SER* 5.0 3.4 - - - +
112H VAL* 4.0 29.2 - - + -
113H ALA 5.7 2.0 - - - +
118H ILE* 4.1 15.9 - - + +
63I TYS 3.6 21.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il