Contacts of the helix formed by residues 483 - 563 (chain A) in PDB entry 1DG3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 483 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481A THR 5.3 1.6 - - - +
482A LEU* 1.3 78.4 - - - +
484A GLU* 1.3 63.9 + - - +
485A LYS* 3.5 8.1 + - - +
486A GLU* 2.9 43.0 + - - +
487A LYS* 3.1 21.6 + - - +
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Residues in contact with GLU 484 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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482A LEU 3.9 0.6 + - - -
483A THR* 1.3 74.0 - - - +
485A LYS* 1.3 57.7 + - - +
487A LYS* 3.4 12.3 + - - +
488A GLU* 3.0 32.0 + - + +
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Residues in contact with LYS 485 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483A THR* 3.2 7.2 + - - +
484A GLU* 1.3 76.4 - - - +
486A GLU* 1.3 61.6 + - + +
488A GLU* 3.1 31.2 + - - +
489A ILE* 2.9 55.1 + - + +
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Residues in contact with GLU 486 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434A ARG* 4.1 20.5 + - - +
476A LEU* 5.7 0.2 - - - -
481A THR 4.3 2.3 - - - +
482A LEU* 3.4 21.8 - - + +
483A THR* 2.9 51.8 + - - +
485A LYS* 1.3 77.0 - - + +
487A LYS* 1.3 55.3 + - - +
489A ILE* 3.2 10.2 + - - +
490A GLU* 2.9 30.8 + - - +
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Residues in contact with LYS 487 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476A LEU* 3.6 24.9 - - + +
477A GLN* 3.5 44.9 + - - +
479A ASP 3.4 26.9 + - - -
480A GLN* 5.0 3.6 - - - +
482A LEU* 3.4 27.7 + - + -
483A THR 3.1 10.5 + - - +
484A GLU* 3.6 11.9 - - + +
485A LYS 3.2 0.2 - - - -
486A GLU* 1.3 71.5 - - - +
488A GLU* 1.3 61.0 + - - +
490A GLU* 3.1 7.7 + - - +
491A VAL* 2.8 36.2 + - - +
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Residues in contact with GLU 488 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484A GLU* 3.0 19.9 + - + +
485A LYS* 3.2 37.2 - - - +
487A LYS* 1.3 77.8 - - - +
489A ILE* 1.3 64.1 + - + +
491A VAL* 3.6 7.5 + - - +
492A GLU* 3.2 29.6 + - - +
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Residues in contact with ILE 489 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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485A LYS* 2.9 47.7 + - + +
486A GLU* 3.4 9.4 - - - +
487A LYS 3.1 0.2 - - - -
488A GLU* 1.3 78.2 - - + +
490A GLU* 1.3 61.9 + - - +
492A GLU* 3.2 12.0 + - - +
493A ARG* 2.9 31.4 + - + +
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Residues in contact with GLU 490 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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433A TYR* 2.7 43.6 + - + +
437A VAL* 4.4 1.9 - - - +
476A LEU* 4.0 17.3 - - + -
482A LEU* 5.7 1.8 - - + -
486A GLU 2.9 15.5 + - - +
487A LYS 3.5 6.7 - - - +
489A ILE* 1.3 78.0 - - - +
491A VAL* 1.3 63.0 + - - +
493A ARG* 2.6 46.6 + - - +
494A VAL* 3.0 32.1 + - - +
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Residues in contact with VAL 491 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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473A ASP* 3.9 9.2 - - - +
476A LEU* 3.7 18.8 - - + +
477A GLN* 3.8 12.3 - - - +
487A LYS 2.8 23.4 + - - +
488A GLU* 3.7 7.0 - - - +
490A GLU* 1.3 76.2 - - - +
492A GLU* 1.3 58.9 + - - +
494A VAL* 3.5 7.1 + - - +
495A LYS* 3.0 29.1 + - + +
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Residues in contact with GLU 492 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488A GLU* 3.2 19.7 + - - +
489A ILE* 3.2 15.7 + - + +
491A VAL* 1.3 79.0 - - - +
493A ARG* 1.3 59.7 + - - +
495A LYS* 3.0 16.4 + - + +
496A ALA* 2.8 29.9 + - + +
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Residues in contact with ARG 493 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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433A TYR* 4.6 1.0 + - - -
437A VAL* 4.6 16.3 - - - +
441A GLN* 5.2 5.3 + - - -
489A ILE* 2.9 16.3 + - + +
490A GLU* 2.6 45.4 + - - +
492A GLU* 1.3 75.8 - - - +
494A VAL* 1.3 69.0 + - - +
496A ALA* 2.9 9.5 + - + +
497A GLU* 2.7 68.0 + - + +
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Residues in contact with VAL 494 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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433A TYR* 4.2 8.5 - - - +
469A GLU* 5.0 21.3 - - + +
472A THR* 5.9 5.4 - - + -
476A LEU* 6.5 0.2 - - + -
490A GLU* 3.0 22.9 + - - +
491A VAL* 3.7 6.1 - - - +
493A ARG* 1.3 96.9 - - - +
495A LYS* 1.3 58.1 + - - +
497A GLU* 3.5 16.0 + - - +
498A SER* 3.0 28.8 + - - -
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Residues in contact with LYS 495 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491A VAL* 3.0 17.6 + - + +
492A GLU* 3.0 21.0 + - + +
494A VAL* 1.3 78.5 - - - +
496A ALA* 1.3 61.3 + - - +
498A SER* 3.4 6.4 + - - -
499A ALA* 3.1 22.5 + - + +
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Residues in contact with ALA 496 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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492A GLU* 2.8 13.4 + - + +
493A ARG* 3.4 10.3 - - + +
495A LYS* 1.3 74.7 - - - +
497A GLU* 1.3 64.3 + - - +
499A ALA* 3.2 7.7 + - - +
500A GLN* 3.0 35.2 + - + +
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Residues in contact with GLU 497 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441A GLN* 4.5 9.9 + - - +
444A LYS* 3.9 24.2 + - - -
493A ARG* 2.7 46.0 + - + +
494A VAL* 3.7 16.2 - - - +
496A ALA* 1.3 73.7 - - - +
498A SER* 1.3 62.6 + - - +
500A GLN* 3.4 10.6 + - + +
501A ALA* 3.2 21.3 + - - +
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Residues in contact with SER 498 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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462A GLN* 5.3 3.4 + - - -
466A LYS* 5.1 7.4 - - - +
469A GLU* 4.4 15.6 + - - -
494A VAL* 3.0 19.7 + - - -
495A LYS* 3.6 6.5 - - - -
496A ALA 3.2 0.2 - - - -
497A GLU* 1.3 75.6 + - - +
499A ALA* 1.3 63.9 + - - +
501A ALA* 3.2 8.6 + - - +
502A SER* 3.0 27.1 + - - -
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Residues in contact with ALA 499 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495A LYS* 3.1 14.5 + - + +
496A ALA* 3.2 10.3 + - - +
498A SER* 1.3 74.0 - - - +
500A GLN* 1.3 70.4 + - - +
502A SER* 3.5 6.7 + - - +
503A ALA* 3.0 23.0 + - - +
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Residues in contact with GLN 500 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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496A ALA* 3.0 31.5 + - + +
497A GLU* 3.4 11.4 - - - +
499A ALA* 1.3 80.9 - - - +
501A ALA* 1.3 62.2 + - - +
503A ALA* 3.0 10.7 - - - +
504A LYS* 2.9 27.0 + - + +
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Residues in contact with ALA 501 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458A GLU* 5.3 2.4 - - - +
462A GLN* 3.4 42.8 - - + +
497A GLU 3.2 10.6 + - - +
498A SER* 3.4 9.2 - - - +
500A GLN* 1.3 76.5 - - - +
502A SER* 1.3 66.5 + - - +
504A LYS* 3.1 18.2 + - - +
505A MET* 3.1 21.6 + - + +
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Residues in contact with SER 502 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498A SER* 3.0 18.1 + - - -
499A ALA* 3.9 6.9 - - - -
501A ALA* 1.3 76.2 - - - +
503A ALA* 1.3 62.0 + - - +
505A MET* 3.6 18.5 + - - +
506A LEU* 3.1 23.2 + - - +
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Residues in contact with ALA 503 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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499A ALA 3.0 14.6 + - - +
500A GLN* 3.0 19.3 - - - +
502A SER* 1.3 77.3 - - - +
504A LYS* 1.3 61.4 + - + +
506A LEU* 3.2 9.8 + - - +
507A HIS* 3.1 20.7 + - - +
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Residues in contact with LYS 504 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458A GLU* 5.7 10.5 - - + +
500A GLN* 2.9 15.1 + - + +
501A ALA* 3.5 11.2 - - - +
503A ALA* 1.3 75.2 - - + +
505A MET* 1.3 64.6 + - + +
507A HIS* 2.9 10.0 + - - +
508A GLU* 2.9 41.5 + - + +
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Residues in contact with MET 505 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458A GLU* 4.4 19.7 - - + +
459A GLU* 3.9 32.8 - - + +
462A GLN* 3.6 30.7 - - + +
501A ALA* 3.1 18.5 + - + +
502A SER* 3.7 22.2 - - - +
504A LYS* 1.3 80.0 - - + +
506A LEU* 1.3 56.9 + - - +
508A GLU* 3.8 9.5 - - - +
509A MET* 2.9 30.7 + - - +
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Residues in contact with LEU 506 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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502A SER 3.1 15.1 + - - +
503A ALA* 3.4 12.1 - - - +
504A LYS 3.1 0.4 - - - -
505A MET* 1.3 76.6 - - - +
507A HIS* 1.3 63.1 + - - +
509A MET* 3.2 13.3 + - + +
510A GLN* 3.0 47.4 + - + +
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Residues in contact with HIS 507 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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503A ALA 3.1 8.2 + - - +
504A LYS* 2.9 12.2 + - - +
506A LEU* 1.3 78.6 - - - +
508A GLU* 1.3 54.6 + - + +
510A GLN* 2.7 39.4 + - + +
511A ARG* 2.8 33.3 + - + +
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Residues in contact with GLU 508 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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455A ILE 5.4 4.0 - - - +
458A GLU* 4.2 24.5 - - - +
504A LYS* 2.9 39.9 + - + +
505A MET* 3.9 7.5 + - - +
507A HIS* 1.3 76.4 - - + +
509A MET* 1.3 56.8 + - - +
511A ARG* 3.6 10.3 - - + +
512A LYS* 3.0 27.7 + - - +
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Residues in contact with MET 509 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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459A GLU* 4.7 14.4 - - - +
505A MET 2.9 18.8 + - - +
506A LEU* 3.3 14.4 - - + +
507A HIS 3.0 0.2 - - - -
508A GLU* 1.3 75.6 - - - +
510A GLN* 1.3 63.9 - - + +
512A LYS* 3.4 38.1 - - + +
513A ASN* 2.9 37.9 + - - +
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Residues in contact with GLN 510 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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506A LEU* 3.1 35.1 - - + +
507A HIS* 2.7 24.3 + - + +
509A MET* 1.3 72.0 - - + +
511A ARG* 1.3 63.9 + - - +
513A ASN* 3.2 9.2 + - - +
514A GLU* 2.9 34.7 + - + +
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Residues in contact with ARG 511 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351A GLN* 4.5 5.1 + - - -
507A HIS* 2.8 25.1 + - + +
508A GLU* 3.6 15.0 - - + +
510A GLN* 1.3 77.7 - - - +
512A LYS* 1.3 57.0 + - - +
514A GLU* 3.1 32.0 + - - +
515A GLN* 3.0 62.9 + - - +
518A GLU* 4.7 11.7 + - - -
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Residues in contact with LYS 512 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350A LEU* 4.1 16.3 - - + +
400A GLN* 5.6 6.7 - - - -
455A ILE* 6.1 5.6 - - + -
508A GLU 3.0 15.5 + - - +
509A MET* 3.4 36.6 - - + +
510A GLN 3.3 0.4 - - - -
511A ARG* 1.3 76.3 - - - +
513A ASN* 1.3 79.5 + - - +
515A GLN* 3.1 15.2 + - - +
516A MET* 3.0 42.7 + - - +
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Residues in contact with ASN 513 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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509A MET* 2.9 27.1 + - - +
510A GLN* 3.2 12.4 + - - +
512A LYS* 1.3 106.1 - - - +
514A GLU* 1.3 61.5 + - + +
516A MET* 3.6 6.7 + - - +
517A MET* 3.2 30.7 + - + +
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Residues in contact with GLU 514 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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510A GLN* 2.9 27.3 + - + +
511A ARG* 3.4 34.4 + - - +
512A LYS 3.1 0.2 - - - -
513A ASN* 1.3 77.2 - - + +
515A GLN* 1.3 59.9 + - - +
517A MET* 3.4 5.5 + - - +
518A GLU* 2.9 30.2 + - - +
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Residues in contact with GLN 515 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350A LEU* 3.6 16.6 - - + +
351A GLN* 3.1 42.3 + - - +
354A LEU* 3.8 17.0 - - + +
511A ARG* 3.0 47.8 + - - +
512A LYS* 3.1 23.5 + - - +
514A GLU* 1.3 76.8 - - - +
516A MET* 1.3 57.5 + - - +
518A GLU* 3.5 12.1 + - - +
519A GLN* 3.0 28.6 + - - +
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Residues in contact with MET 516 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350A LEU* 4.1 15.5 - - + -
354A LEU* 4.0 20.9 - - - -
392A ARG* 3.9 32.9 + - - +
393A ASP* 4.5 5.2 - - - +
396A CYS* 3.8 26.5 - - + -
512A LYS* 3.0 36.4 + - - +
513A ASN* 3.8 7.0 - - - +
515A GLN* 1.3 75.4 - - - +
517A MET* 1.3 68.9 + - + +
518A GLU 3.1 0.2 - - - -
519A GLN* 3.4 3.3 + - - -
520A LYS* 3.0 23.7 + - - +
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Residues in contact with MET 517 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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513A ASN* 3.2 17.9 + - + +
514A GLU* 3.4 6.0 + - - +
516A MET* 1.3 81.7 - - + +
518A GLU* 1.3 61.7 + - - +
520A LYS* 3.5 29.9 + - + +
521A GLU* 3.2 22.0 + - - +
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Residues in contact with GLU 518 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351A GLN* 5.0 11.9 + - - +
511A ARG* 4.7 14.2 + - - -
514A GLU 2.9 17.0 + - - +
515A GLN* 3.5 13.9 - - - +
517A MET* 1.3 75.6 - - - +
519A GLN* 1.3 66.4 + - - +
521A GLU* 3.0 9.6 + - + +
522A ARG* 2.9 58.6 + - + +
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Residues in contact with GLN 519 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351A GLN* 5.5 1.4 + - - -
354A LEU* 3.7 41.9 - - + +
355A ASP* 5.2 1.6 - - - +
357A HIS* 4.7 4.8 - - + -
358A ARG* 3.8 25.2 - - - +
361A GLU* 3.9 7.1 + - - -
392A ARG* 4.4 20.0 - - - +
515A GLN 3.0 14.2 + - - +
516A MET* 3.4 4.5 + - - +
518A GLU* 1.3 79.8 - - - +
520A LYS* 1.3 57.2 + - - +
522A ARG* 3.8 20.5 - - - +
523A SER* 2.9 46.3 + - - +
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Residues in contact with LYS 520 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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389A GLU* 4.6 19.5 + - - +
392A ARG* 3.8 20.1 - - - +
516A MET 3.0 17.9 + - - +
517A MET* 3.5 32.2 - - + +
519A GLN* 1.3 75.8 - - - +
521A GLU* 1.3 63.7 + - - +
523A SER* 3.5 6.0 + - - -
524A TYR* 3.1 24.7 + - - +
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Residues in contact with GLU 521 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
517A MET 3.2 8.6 + - - +
518A GLU* 3.0 12.0 + - + +
520A LYS* 1.3 79.0 + - - +
522A ARG* 1.3 60.4 + - + +
524A TYR* 3.3 25.0 + - - +
525A GLN* 2.7 69.5 + - - +
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Residues in contact with ARG 522 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A ARG* 3.4 46.6 - - + +
518A GLU* 2.9 46.6 + - + +
519A GLN* 3.2 28.9 + - - +
521A GLU* 1.3 77.9 - - + +
523A SER* 1.3 56.0 + - - +
525A GLN* 3.2 8.2 + - - +
526A GLU* 2.8 31.0 + - - +
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Residues in contact with SER 523 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357A HIS* 4.5 2.9 + - - -
361A GLU* 2.7 40.5 + - - -
392A ARG* 5.5 2.5 + - - -
519A GLN* 2.9 28.4 + - - +
520A LYS* 3.8 6.7 - - - -
522A ARG* 1.3 74.3 - - - +
524A TYR* 1.3 63.0 + - - +
526A GLU* 3.1 13.6 + - - +
527A HIS* 3.1 24.2 + - - -
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Residues in contact with TYR 524 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520A LYS* 3.1 17.8 + - + +
521A GLU* 3.5 28.3 - - - +
523A SER* 1.3 80.0 - - - +
525A GLN* 1.3 65.5 - - + +
527A HIS* 3.6 7.0 + - - +
528A LEU* 3.4 54.3 + - + +
----------------------------------------------------------
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Residues in contact with GLN 525 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
521A GLU* 2.7 47.5 + - - +
522A ARG* 3.7 6.5 - - - +
524A TYR* 1.3 85.0 - - + +
526A GLU* 1.3 59.2 + - - +
528A LEU* 3.4 7.5 + - + +
529A LYS* 3.0 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 526 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A ARG 5.9 0.2 - - - +
361A GLU* 5.0 4.0 - - - +
362A ARG* 3.8 26.5 - - + +
365A ILE* 3.9 12.1 - - + -
522A ARG 2.8 20.5 + - - +
523A SER* 3.1 9.1 + - - +
525A GLN* 1.3 70.7 - - - +
527A HIS* 1.3 65.6 + - - +
529A LYS* 3.3 22.8 + - - +
530A GLN* 2.9 59.7 + - - +
----------------------------------------------------------
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Residues in contact with HIS 527 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361A GLU* 4.5 8.5 + - - -
365A ILE* 3.4 34.2 - - + +
381A GLN* 3.1 42.0 + - + +
384A LEU* 4.4 4.0 - - + -
385A ALA* 3.6 41.9 - - + +
388A LEU* 4.2 11.4 - - + +
523A SER* 3.1 29.5 + - - +
524A TYR* 3.9 7.2 - - - +
526A GLU* 1.3 77.4 - - - +
528A LEU* 1.3 65.0 + - + +
530A GLN* 3.5 0.9 + - - +
531A LEU* 3.1 20.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 528 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
524A TYR* 3.4 52.1 + - + +
525A GLN* 3.8 10.1 - - + +
526A GLU 3.3 0.6 - - - -
527A HIS* 1.3 82.4 - - + +
529A LYS* 1.3 56.9 + - - +
531A LEU* 3.8 18.2 - - + +
532A THR* 2.8 40.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 529 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
525A GLN 3.0 18.1 + - - +
526A GLU* 3.6 27.9 + - - +
527A HIS 3.3 0.2 - - - -
528A LEU* 1.3 77.1 - - - +
530A GLN* 1.3 66.3 + - - +
532A THR* 3.9 5.0 - - - -
533A GLU* 2.7 52.5 + - + +
----------------------------------------------------------
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Residues in contact with GLN 530 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A ARG* 3.2 26.7 + - - +
365A ILE* 3.4 27.9 - - + +
366A GLU* 3.2 34.0 + - - +
369A ILE* 4.1 14.9 - - + +
526A GLU* 2.9 37.2 + - - +
527A HIS 4.2 0.2 - - - +
529A LYS* 1.3 82.7 - - + +
531A LEU* 1.3 66.0 + - - +
533A GLU* 3.4 11.8 + - - +
534A LYS* 3.1 21.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 531 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A ILE* 4.3 10.9 - - + +
375A ASP* 6.3 1.6 - - + -
378A HIS* 3.5 48.0 - - + +
381A GLN* 3.7 20.2 - - - +
527A HIS 3.1 19.1 + - - +
528A LEU* 3.8 19.3 - - + +
530A GLN* 1.3 72.9 - - - +
532A THR* 1.3 68.0 + - - +
534A LYS* 3.0 11.6 + - + +
535A MET* 2.9 44.0 + - + +
----------------------------------------------------------
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Residues in contact with THR 532 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
528A LEU* 2.8 28.5 + - - +
529A LYS* 3.9 5.8 - - - -
531A LEU* 1.3 79.5 - - - +
533A GLU* 1.3 63.2 + - + +
535A MET* 3.4 9.5 + - - +
536A GLU* 3.0 23.8 + - + +
----------------------------------------------------------
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Residues in contact with GLU 533 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
529A LYS* 2.7 51.0 + - + +
530A GLN* 3.6 14.3 - - - +
531A LEU 3.2 0.2 - - - -
532A THR* 1.3 79.4 - - + +
534A LYS* 1.3 57.8 + - - +
536A GLU* 3.2 7.9 + - - +
537A ASN* 3.0 36.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 534 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A ILE* 2.8 51.6 + - + +
370A ARG* 5.1 2.2 + - - +
372A SER* 2.9 32.1 + - - +
373A PHE* 4.4 8.3 - - - +
374A LYS 5.6 0.4 - - - +
375A ASP* 6.6 0.2 - - - -
530A GLN 3.1 10.3 + - - +
531A LEU* 3.0 17.6 + - + +
533A GLU* 1.3 78.8 - - - +
535A MET* 1.3 58.7 + - + +
537A ASN* 3.2 11.1 + - + +
538A ASP* 2.8 52.7 + - - +
----------------------------------------------------------
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Residues in contact with MET 535 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A HIS* 4.1 22.9 - - + +
531A LEU* 2.9 44.8 + - + +
532A THR* 3.8 8.3 - - - +
534A LYS* 1.3 72.1 - - + +
536A GLU* 1.3 61.0 + - - +
538A ASP* 3.3 11.7 + - - +
539A ARG* 2.8 30.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 536 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
532A THR* 3.0 15.0 + - + +
533A GLU* 3.2 11.6 + - - +
535A MET* 1.3 77.4 - - - +
537A ASN* 1.3 66.4 + - - +
539A ARG* 3.1 41.6 + - - +
540A VAL* 3.0 39.4 + - + +
----------------------------------------------------------
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Residues in contact with ASN 537 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533A GLU* 3.0 23.3 + - - +
534A LYS* 3.6 10.4 - - - +
536A GLU* 1.3 79.1 - - - +
538A ASP* 1.3 64.0 + - - +
540A VAL* 3.4 8.2 + - - +
541A GLN* 3.0 24.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 538 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284A GLY* 5.7 1.7 - - - +
374A LYS 5.9 1.0 + - - -
534A LYS* 2.8 47.2 + - - +
535A MET* 3.6 11.3 - - - +
537A ASN* 1.3 76.2 - - - +
539A ARG* 1.3 64.7 + - - +
541A GLN* 3.3 6.9 + - - +
542A LEU* 3.0 25.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 539 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A MET 2.8 20.9 + - - +
536A GLU* 3.1 38.9 + - - +
538A ASP* 1.3 74.5 - - - +
540A VAL* 1.3 74.2 + - - +
542A LEU* 3.4 7.1 + - - +
543A LEU* 3.0 45.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 540 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536A GLU* 3.0 37.0 + - + +
537A ASN* 3.7 11.4 - - - +
539A ARG* 1.3 87.6 - - - +
541A GLN* 1.3 62.6 + - - +
543A LEU* 3.3 8.6 + - + +
544A LYS* 3.1 24.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 541 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284A GLY* 3.7 24.5 - - - +
285A GLY* 4.0 12.1 - - - +
537A ASN 3.0 17.2 + - - +
538A ASP* 3.6 8.3 - - - +
540A VAL* 1.3 77.1 - - - +
542A LEU* 1.3 62.6 + - - +
544A LYS* 3.3 19.3 + - - +
545A GLU* 2.7 51.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 542 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283A SER* 6.5 0.9 - - - -
284A GLY* 6.3 0.4 - - - +
538A ASP 3.0 17.2 + - - +
539A ARG* 3.7 6.7 - - + +
541A GLN* 1.3 73.5 - - - +
543A LEU* 1.3 62.8 + - - +
545A GLU* 3.1 21.9 + - + +
546A GLN* 2.8 61.6 + - + +
----------------------------------------------------------
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Residues in contact with LEU 543 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
539A ARG* 3.0 35.5 + - + +
540A VAL* 3.6 8.3 - - + +
541A GLN 3.3 0.2 - - - -
542A LEU* 1.3 77.0 - - - +
544A LYS* 1.3 58.0 + - - +
546A GLN* 3.2 12.6 + - - +
547A GLU* 2.8 46.0 + - + +
583A MET* 3.8 33.2 - - + +
----------------------------------------------------------
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Residues in contact with LYS 544 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540A VAL* 3.1 15.0 + - + +
541A GLN* 3.5 25.0 + - - +
543A LEU* 1.3 77.1 - - - +
545A GLU* 1.3 64.8 + - + +
547A GLU* 3.3 7.8 + - - +
548A ARG* 3.1 22.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 545 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173A SER* 5.6 2.4 - - - -
283A SER* 4.2 10.4 - - - -
284A GLY 3.2 26.9 + - - -
285A GLY 3.6 2.5 + - - -
541A GLN* 2.7 45.5 + - - +
542A LEU* 3.4 24.0 - - + +
544A LYS* 1.3 77.6 - - + +
546A GLN* 1.3 61.6 + - + +
548A ARG* 3.2 13.5 + - - +
549A THR* 3.1 24.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 546 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542A LEU* 2.8 48.7 + - + +
543A LEU* 3.2 15.4 + - - +
545A GLU* 1.3 74.3 - - + +
547A GLU* 1.3 60.5 + - - +
549A THR* 3.3 7.7 + - - -
550A LEU* 2.8 29.8 + - - +
579A LEU* 3.8 16.9 - - + +
582A LYS* 4.4 20.0 + - - +
583A MET* 3.5 40.9 - - + +
----------------------------------------------------------
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Residues in contact with GLU 547 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543A LEU* 2.8 32.9 + - + +
544A LYS* 3.7 7.4 - - - +
545A GLU 3.3 0.2 - - - -
546A GLN* 1.3 76.3 - - - +
548A ARG* 1.3 57.3 + - - +
550A LEU* 3.4 19.0 + - - +
551A ALA* 3.0 30.0 + - - +
583A MET* 3.3 21.7 - - + +
----------------------------------------------------------
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Residues in contact with ARG 548 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172A VAL 4.1 3.0 + - - -
173A SER* 3.4 31.7 + - - +
174A PHE* 5.4 0.2 - - - +
175A PHE 5.1 2.2 + - - -
231A PRO* 3.4 35.9 - - - +
232A LYS* 6.0 3.0 - - - +
278A LYS* 5.8 6.1 - - - +
544A LYS* 3.1 13.1 + - + +
545A GLU* 3.3 15.0 - - - +
547A GLU* 1.3 74.2 - - - +
549A THR* 1.3 65.6 + - - +
551A ALA* 3.3 6.3 + - - +
552A LEU* 3.1 40.0 + - + +
----------------------------------------------------------
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Residues in contact with THR 549 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169A ALA 5.1 1.1 - - - +
170A ASP* 6.1 0.9 - - - -
172A VAL* 3.8 13.9 - - + -
173A SER* 3.3 29.7 - - - -
545A GLU 3.1 11.6 + - - -
546A GLN* 3.6 9.9 - - - -
548A ARG* 1.3 80.1 - - - +
550A LEU* 1.3 58.9 + - - +
552A LEU* 3.2 11.5 + - - +
553A LYS* 2.9 49.7 + - - +
579A LEU* 3.8 19.5 - - + -
----------------------------------------------------------
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Residues in contact with LEU 550 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
546A GLN 2.8 18.9 + - - +
547A GLU* 3.5 24.7 - - - +
548A ARG 3.3 0.2 - - - -
549A THR* 1.3 76.7 - - - +
551A ALA* 1.3 56.7 + - - +
553A LYS* 3.3 3.6 + - - +
554A LEU* 2.9 46.3 + - + +
576A ILE* 3.4 33.4 - - + -
579A LEU* 3.7 15.2 - - + +
580A GLN* 3.9 26.7 - - + +
583A MET* 4.4 11.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 551 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547A GLU 3.0 16.9 + - - +
548A ARG* 3.3 6.5 + - - +
550A LEU* 1.3 76.2 - - - +
552A LEU* 1.3 63.7 + - + +
554A LEU* 3.4 9.7 + - - +
555A GLN* 3.1 23.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 552 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172A VAL* 4.0 20.0 - - + +
231A PRO* 3.8 42.8 - - + +
232A LYS* 6.0 1.6 - - + -
548A ARG* 3.1 39.2 + - + +
549A THR* 3.5 10.1 - - - +
551A ALA* 1.3 76.6 - - + +
553A LYS* 1.3 65.4 + - - +
555A GLN* 3.4 18.0 + - - +
556A GLU* 3.2 23.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 553 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169A ALA* 2.8 32.3 + - - +
172A VAL* 3.8 16.0 - - + +
228A LYS* 4.8 6.9 + - - +
549A THR* 2.9 38.7 + - + +
550A LEU* 3.8 3.1 - - - +
552A LEU* 1.3 77.9 - - - +
554A LEU* 1.3 57.4 + - - +
556A GLU* 4.7 0.2 - - - -
557A GLN* 2.8 32.7 + - - +
572A MET* 3.6 19.7 - - + +
575A GLU* 3.0 40.8 + - + +
576A ILE* 3.8 24.5 - - + +
579A LEU* 4.9 6.5 - - + -
----------------------------------------------------------
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Residues in contact with LEU 554 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550A LEU* 2.9 39.9 + - + +
551A ALA* 3.7 8.5 - - - +
553A LYS* 1.3 77.6 - - - +
555A GLN* 1.3 63.1 - - - +
557A GLN* 3.7 8.2 - - - +
558A GLU* 2.9 45.5 + - - +
573A LYS* 5.2 6.3 - - - -
576A ILE* 3.7 26.9 - - + -
580A GLN* 6.2 0.7 - - - +
----------------------------------------------------------
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Residues in contact with GLN 555 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551A ALA 3.1 17.2 + - - +
552A LEU* 3.6 19.4 - - - +
553A LYS 3.3 0.2 - - - -
554A LEU* 1.3 75.6 - - - +
556A GLU* 1.3 61.7 + - - +
558A GLU* 4.0 5.9 - - - +
559A GLN* 3.2 32.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 556 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
224A LEU* 6.2 0.2 - - - +
227A ARG* 3.4 66.9 + - - +
228A LYS* 4.9 2.9 - - - +
233A LYS* 5.0 5.3 + - - +
552A LEU 3.2 13.7 + - - +
553A LYS* 3.8 3.1 - - - +
555A GLN* 1.3 76.3 - - - +
557A GLN* 1.3 65.9 + - - +
559A GLN* 3.1 10.7 + - - +
560A LEU* 3.0 32.7 + - - +
572A MET* 3.8 18.7 - - + +
----------------------------------------------------------
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Residues in contact with GLN 557 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553A LYS 2.8 22.1 + - - +
554A LEU* 3.7 6.4 - - - +
556A GLU* 1.3 73.9 - - - +
558A GLU* 1.3 71.0 + - - +
560A LEU* 3.4 5.1 + - - +
561A LEU* 3.0 34.4 + - - +
569A SER* 2.5 57.6 + - - +
572A MET* 3.7 21.0 - - + -
573A LYS* 3.9 24.2 + - - +
576A ILE* 3.7 18.2 - - + +
----------------------------------------------------------
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Residues in contact with GLU 558 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554A LEU* 2.9 35.1 + - + +
555A GLN* 4.0 4.9 - - - +
557A GLN* 1.3 87.1 - - - +
559A GLN* 1.3 61.6 + - + +
561A LEU* 3.3 12.2 + - + +
562A LYS* 2.9 52.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 559 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A LYS* 4.8 4.0 - - - +
227A ARG* 4.5 11.2 - - - +
555A GLN* 3.2 22.6 + - + +
556A GLU* 3.1 17.3 + - - +
558A GLU* 1.3 73.8 - - - +
560A LEU* 1.3 60.6 + - - +
562A LYS* 3.1 21.2 + - - +
563A GLU* 2.8 55.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 560 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208A LEU* 3.8 27.1 - - + -
224A LEU* 4.7 9.0 - - + -
227A ARG* 3.8 17.5 - - - +
228A LYS* 5.3 0.9 - - + -
556A GLU* 3.0 22.8 + - - +
557A GLN* 3.4 6.9 + - - +
559A GLN* 1.3 75.5 - - - +
561A LEU* 1.3 60.6 + - - +
563A GLU* 3.3 10.6 + - - +
564A GLY 3.2 3.6 + - - -
565A PHE* 2.8 34.7 + - + +
568A GLU* 4.0 27.6 - - + +
569A SER* 4.1 13.0 - - - +
572A MET* 3.7 31.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 561 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557A GLN* 3.0 21.1 + - - +
558A GLU* 3.3 16.2 - - + +
560A LEU* 1.3 76.5 - - - +
562A LYS* 1.3 63.1 + - + +
564A GLY* 2.7 26.3 + - - -
565A PHE 4.8 1.3 - - - +
566A GLN* 5.5 1.1 - - - +
569A SER* 3.4 24.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 562 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558A GLU* 2.9 39.7 + - - +
559A GLN* 3.6 21.0 + - - +
561A LEU* 1.3 79.1 - - + +
563A GLU* 1.3 57.8 + - + +
564A GLY* 2.9 10.7 + - - -
----------------------------------------------------------
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Residues in contact with GLU 563 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A LYS* 2.9 38.1 + - + +
208A LEU 5.6 0.4 + - - -
210A LYS* 3.9 14.2 + - - -
227A ARG* 3.0 34.8 + - - -
559A GLN* 2.8 39.5 + - - +
560A LEU* 3.7 11.6 - - - +
561A LEU 3.2 0.4 - - - -
562A LYS* 1.3 75.2 - - + +
564A GLY* 1.3 61.4 + - - +
565A PHE* 3.3 30.5 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il