Contacts of the helix formed by residues 832 - 860 (chain A) in PDB entry 1DQ8


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLY 832 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    586A  ASP*     5.3     2.5    -      -       -      -
    652A  GLY*     3.1    24.2    -      -       -      -
    653A  ASP*     2.9    26.4    +      -       -      -
    704A  LYS*     4.9     0.3    -      -       -      -
    831A  PRO*     1.3    70.7    -      -       -      +
    833A  GLU*     1.3    55.9    +      -       -      +
    835A  ALA*     3.4     3.9    +      -       -      +
    836A  ARG*     3.0    44.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 833 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    653A  ASP*     4.1     0.2    -      -       -      -
    827A  CYS*     4.0     9.6    -      -       -      -
    830A  ASN*     3.0    40.0    +      -       +      +
    832A  GLY*     1.3    76.2    -      -       -      +
    834A  ASN*     1.3    61.4    +      -       -      +
    836A  ARG*     2.7    44.2    +      -       -      +
    837A  GLN*     2.9    41.7    +      -       +      +
    840A  ARG*     4.6    11.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASN 834 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    653A  ASP*     2.9    10.3    +      -       -      +
    804A  THR*     3.6     7.6    -      -       -      +
    822A  GLY      3.9     6.6    +      -       -      +
    823A  VAL*     3.4    40.1    -      -       -      +
    824A  GLN      3.3    12.9    +      -       -      -
    825A  GLY      2.7    21.0    +      -       -      -
    826A  ALA      3.6    13.9    +      -       -      -
    827A  CYS*     3.7    15.0    -      -       -      +
    833A  GLU*     1.3    77.8    -      -       -      +
    835A  ALA*     1.3    59.1    +      -       -      +
    837A  GLN*     3.4     4.2    +      -       -      +
    838A  LEU*     3.0    24.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 835 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    652A  GLY      4.5     0.2    -      -       -      +
    653A  ASP*     3.1    34.9    +      -       -      +
    704A  LYS*     3.9    22.0    -      -       -      +
    802A  ILE*     3.7     7.1    -      -       -      +
    803A  GLY*     4.3     9.9    -      -       -      -
    804A  THR*     4.0     9.8    -      -       -      +
    832A  GLY      3.7     7.4    -      -       -      +
    834A  ASN*     1.3    75.3    -      -       -      +
    836A  ARG*     1.3    59.1    +      -       -      +
    838A  LEU*     3.2     4.5    +      -       -      +
    839A  ALA*     2.9    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 836 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    583A  VAL*     4.0    27.5    -      -       +      +
    586A  ASP*     3.9    21.2    +      -       -      +
    650A  ARG*     4.4    18.2    -      -       -      +
    704A  LYS*     4.2    11.7    -      -       -      +
    830A  ASN*     3.7    12.7    +      -       -      +
    831A  PRO      3.0    21.6    +      -       -      -
    832A  GLY*     3.0    25.5    +      -       -      +
    833A  GLU*     2.7    59.2    +      -       -      +
    835A  ALA*     1.3    76.3    -      -       -      +
    837A  GLN*     1.3    63.5    +      -       -      +
    839A  ALA*     3.2     6.6    +      -       -      +
    840A  ARG*     3.0    31.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 837 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    546A  LEU*     4.6     2.8    -      -       -      +
    547A  ASP*     5.2     1.6    +      -       -      +
    549A  LYS*     2.9    29.9    +      -       -      +
    551A  PHE*     3.7    25.9    -      -       +      -
    823A  VAL*     3.7    20.2    -      -       +      -
    833A  GLU*     2.9    29.9    +      -       +      +
    834A  ASN*     3.6     6.3    -      -       -      +
    836A  ARG*     1.3    79.0    -      -       -      +
    838A  LEU*     1.3    55.7    +      -       -      +
    840A  ARG*     3.2    25.8    +      -       -      +
    841A  ILE*     2.9    34.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 838 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    760A  ILE*     4.6    15.0    -      -       +      -
    764A  CYS*     4.7     2.2    -      -       +      -
    766A  GLN*     3.9    11.9    -      -       +      +
    802A  ILE*     3.6    32.8    -      -       +      -
    804A  THR*     4.1     9.2    -      -       +      -
    818A  LEU*     3.9    23.3    -      -       +      -
    821A  LEU*     3.7    30.1    -      -       +      -
    823A  VAL*     4.2    10.1    -      -       +      +
    834A  ASN      3.0    14.0    +      -       -      +
    835A  ALA      3.2     8.3    +      -       -      +
    837A  GLN*     1.3    73.2    -      -       -      +
    839A  ALA*     1.3    60.8    +      -       -      +
    841A  ILE*     3.1    11.3    +      -       +      +
    842A  VAL*     2.8    29.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 839 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    704A  LYS*     3.7    33.7    -      -       +      -
    706A  VAL*     3.8     9.9    -      -       +      -
    800A  ILE*     3.4    27.5    -      -       +      +
    802A  ILE*     4.2     3.1    -      -       +      +
    835A  ALA      2.9    14.0    +      -       -      +
    836A  ARG      3.4     9.0    -      -       -      +
    838A  LEU*     1.3    76.8    -      -       -      +
    840A  ARG*     1.3    55.8    +      -       -      +
    842A  VAL*     3.2     2.3    +      -       -      -
    843A  CYS*     2.9    26.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 840 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    546A  LEU*     3.5    10.4    -      -       +      +
    547A  ASP*     3.3    23.5    +      -       -      +
    549A  LYS*     5.2     4.6    -      -       -      +
    581A  SER*     2.9    49.2    +      -       -      +
    582A  ARG*     4.1    12.5    -      -       -      +
    583A  VAL*     3.6    24.0    -      -       +      +
    706A  VAL*     4.1    13.5    -      -       +      -
    833A  GLU*     4.6    11.0    +      -       -      -
    836A  ARG*     3.0    21.6    +      -       -      +
    837A  GLN*     3.5    32.6    +      -       -      +
    839A  ALA*     1.3    71.7    -      -       -      +
    841A  ILE*     1.3    61.0    +      -       -      +
    843A  CYS*     3.3     2.3    +      -       -      +
    844A  GLY      2.9    24.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 841 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    544A  LEU*     4.0     4.2    -      -       +      +
    546A  LEU*     3.8     5.6    -      -       +      -
    551A  PHE*     3.6    42.8    -      -       +      -
    553A  VAL*     4.1    20.9    -      -       +      -
    760A  ILE*     5.1     2.0    -      -       +      -
    821A  LEU*     3.8    31.4    -      -       +      +
    823A  VAL*     4.6     1.3    -      -       +      -
    837A  GLN*     2.9    33.7    +      -       +      +
    838A  LEU*     3.1    15.9    +      -       +      +
    840A  ARG*     1.3    76.4    -      -       -      +
    842A  VAL*     1.3    55.5    +      -       -      +
    844A  GLY*     3.2     0.7    +      -       -      -
    845A  THR*     2.7    48.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 842 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    756A  ILE*     4.3     0.3    -      -       -      +
    757A  VAL*     3.9    29.8    -      -       +      -
    760A  ILE*     4.0    34.5    -      -       +      -
    761A  TYR*     4.2     8.1    -      -       +      -
    797A  MET*     4.6     0.2    -      -       +      -
    800A  ILE*     3.9    20.0    -      -       +      -
    802A  ILE*     3.8    21.1    -      -       +      -
    838A  LEU*     2.8    21.2    +      -       +      +
    839A  ALA*     3.2     8.5    +      -       -      +
    841A  ILE*     1.3    71.0    -      -       +      +
    843A  CYS*     1.3    65.2    +      -       -      +
    845A  THR*     3.9     1.2    -      -       -      -
    846A  VAL*     3.0    26.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with CYS 843 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    706A  VAL*     3.6    37.5    -      -       +      -
    708A  CYS*     3.8    12.7    -      -       +      +
    795A  CYS*     3.5    27.8    -      -       -      +
    797A  MET*     3.8    30.3    -      -       -      -
    800A  ILE*     4.3     1.3    -      -       +      -
    839A  ALA      2.9    10.2    +      -       -      +
    840A  ARG      3.8     2.2    -      -       -      +
    841A  ILE      3.3     0.2    -      -       -      -
    842A  VAL*     1.3    76.2    -      -       -      +
    844A  GLY*     1.3    61.8    +      -       -      +
    846A  VAL*     3.4     3.5    +      -       -      +
    847A  MET*     3.1    22.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 844 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    544A  LEU*     4.1    18.6    -      -       -      +
    546A  LEU*     4.7     4.7    -      -       -      -
    573A  ILE*     4.3     2.4    -      -       -      +
    579A  ALA*     5.9     0.4    -      -       -      -
    708A  CYS*     3.7    20.8    -      -       -      -
    840A  ARG      2.9    15.1    +      -       -      -
    841A  ILE      3.7     2.7    -      -       -      -
    843A  CYS*     1.3    75.0    -      -       -      +
    845A  THR*     1.3    58.9    +      -       -      +
    847A  MET*     3.2     6.4    +      -       -      +
    848A  ALA*     3.1    24.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 845 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    541A  ALA*     5.5     0.2    -      -       +      -
    544A  LEU*     3.5    15.6    -      -       -      +
    553A  VAL*     3.5    25.6    -      -       +      +
    555A  MET*     4.6     3.8    -      -       -      -
    566A  THR*     3.4    24.3    -      -       +      +
    570A  CYS*     5.4     2.2    -      -       -      -
    756A  ILE*     3.6    19.5    -      -       +      +
    760A  ILE*     3.9    13.0    -      -       +      +
    841A  ILE*     2.7    26.5    +      -       -      +
    842A  VAL      3.9     0.4    -      -       -      -
    844A  GLY*     1.3    69.6    -      -       -      +
    846A  VAL*     1.3    66.7    +      -       -      +
    848A  ALA*     3.2     7.8    +      -       -      +
    849A  GLY*     2.9    19.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 846 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    753A  ALA*     3.8    33.0    -      -       +      +
    756A  ILE*     3.6    26.6    -      -       +      +
    757A  VAL*     4.1     5.2    -      -       +      -
    777A  CYS*     4.1     9.0    -      -       -      -
    795A  CYS*     4.3     3.6    -      -       -      -
    797A  MET*     3.7    30.1    -      -       +      -
    842A  VAL      3.0    20.1    +      -       -      +
    843A  CYS      3.5     4.7    -      -       -      +
    844A  GLY      3.3     0.2    -      -       -      -
    845A  THR*     1.3    75.1    -      -       -      +
    847A  MET*     1.3    54.8    +      -       -      +
    849A  GLY*     2.9     2.8    +      -       -      -
    850A  GLU*     2.7    46.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with MET 847 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    573A  ILE*     3.6    15.7    -      -       +      -
    579A  ALA*     3.6    22.4    -      -       +      -
    708A  CYS*     3.8    12.6    -      -       -      +
    709A  GLU*     3.6    29.8    -      -       -      +
    710A  ALA*     3.5    27.1    -      -       +      -
    793A  ILE*     3.8    31.1    -      -       +      +
    794A  SER*     4.3     2.2    -      -       -      -
    795A  CYS*     3.6    22.4    -      -       +      -
    843A  CYS      3.1    12.3    +      -       -      +
    844A  GLY*     3.2     7.4    +      -       -      +
    846A  VAL*     1.3    77.8    -      -       -      +
    848A  ALA*     1.3    56.0    +      -       -      +
    850A  GLU*     3.4     2.0    +      -       -      +
    851A  LEU*     2.9    30.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 848 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    544A  LEU*     4.8     0.4    -      -       +      -
    566A  THR*     3.8    10.1    -      -       +      +
    569A  GLY*     3.3    16.6    -      -       -      -
    570A  CYS*     3.6    35.0    -      -       -      +
    573A  ILE*     3.8    18.6    -      -       +      +
    844A  GLY      3.1    10.7    +      -       -      +
    845A  THR*     3.5     8.7    -      -       -      +
    846A  VAL      3.2     0.2    -      -       -      -
    847A  MET*     1.3    76.2    -      -       -      +
    849A  GLY*     1.3    62.3    +      -       -      +
    851A  LEU*     3.4     2.7    +      -       -      +
    852A  SER*     3.2    18.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 849 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    565A  SER*     4.4     0.8    +      -       -      -
    566A  THR*     4.4    13.9    -      -       -      +
    752A  HIS*     3.0    22.9    +      -       -      -
    756A  ILE*     4.0    11.7    -      -       -      -
    845A  THR      2.9    14.0    +      -       -      -
    846A  VAL      2.9     3.3    +      -       -      -
    848A  ALA*     1.3    78.3    -      -       -      +
    850A  GLU*     1.3    61.8    +      -       -      +
    852A  SER*     3.3     2.8    +      -       -      -
    853A  LEU      3.0    20.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 850 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    736A  ASN*     4.0     1.9    +      -       -      -
    750A  ASN*     4.0     4.5    -      -       -      -
    751A  ALA*     2.7    28.5    +      -       -      +
    752A  HIS*     2.8    34.4    +      -       -      -
    753A  ALA*     3.6     6.0    +      -       -      -
    779A  THR*     2.8    36.6    +      -       +      +
    781A  MET*     4.7     0.9    -      -       -      -
    793A  ILE*     4.5     3.6    -      -       +      -
    795A  CYS*     3.9     7.9    -      -       -      -
    846A  VAL*     2.7    33.1    +      -       +      +
    847A  MET*     3.6     6.7    -      -       -      +
    849A  GLY*     1.3    71.3    -      -       -      +
    851A  LEU*     1.3    62.3    +      -       -      +
    853A  LEU*     5.0     0.2    -      -       -      -
    854A  MET*     2.8    35.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 851 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    569A  GLY*     4.2     9.2    -      -       -      +
    572A  ALA*     4.4     3.6    -      -       +      -
    573A  ILE*     3.7    29.6    -      -       +      -
    712A  ILE*     3.8    23.3    -      -       +      -
    721A  LEU*     3.9    16.1    -      -       +      +
    728A  MET*     3.6    16.4    -      -       +      +
    791A  LEU*     3.7    29.6    -      -       +      -
    793A  ILE*     3.8    26.0    -      -       +      +
    847A  MET      2.9    17.0    +      -       -      +
    848A  ALA      3.5     4.9    -      -       -      +
    850A  GLU*     1.3    78.1    -      -       -      +
    852A  SER*     1.3    56.0    +      -       -      +
    855A  ALA*     3.0    29.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 852 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100A  COA      2.9    14.3    +      -       -      +
    565A  SER*     2.8    41.1    +      -       -      -
    568A  ARG*     3.0    29.7    +      -       -      +
    569A  GLY*     3.9     4.9    -      -       -      -
    721A  LEU*     4.3     6.3    -      -       -      -
    848A  ALA      3.2    10.5    +      -       -      -
    849A  GLY      3.3     1.1    +      -       -      -
    851A  LEU*     1.3    77.5    -      -       -      +
    853A  LEU*     1.3    64.3    +      -       -      +
    855A  ALA      3.3     0.7    +      -       -      -
    856A  ALA*     3.0    19.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 853 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100A  COA      3.4    35.9    -      -       -      +
    200A  MAH      3.6    31.4    -      -       +      +
    565A  SER*     3.8     1.0    +      -       -      -
    751A  ALA*     3.7    11.0    -      -       +      -
    752A  HIS*     3.5    41.7    -      -       +      +
    849A  GLY      3.0     7.1    +      -       -      +
    850A  GLU      4.4     1.1    -      -       -      +
    852A  SER*     1.3    76.3    -      -       -      +
    854A  MET*     1.3    59.8    +      -       -      +
    856A  ALA*     3.2     3.4    +      -       +      +
    857A  LEU*     2.9    41.9    +      -       +      +
    862A  LEU*     3.9    19.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 854 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    728A  MET*     3.8    11.7    -      -       +      +
    731A  VAL*     3.4    33.7    -      -       +      +
    732A  ASN*     3.4    31.4    -      -       +      +
    735A  LYS*     3.7    13.5    -      -       +      -
    736A  ASN*     3.5    20.4    -      -       -      +
    751A  ALA*     3.7    20.9    -      -       +      -
    781A  MET*     3.7    20.2    -      -       +      -
    850A  GLU*     2.8    30.3    +      -       +      +
    853A  LEU*     1.3    75.4    -      -       -      +
    855A  ALA*     1.3    56.7    +      -       -      +
    857A  LEU*     3.3     7.1    +      -       -      +
    858A  ALA*     2.9    30.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 855 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    568A  ARG*     4.0     4.0    -      -       -      +
    721A  LEU*     3.3    41.7    -      -       +      +
    723A  THR*     3.9     4.4    -      -       +      +
    728A  MET*     3.4    16.5    -      -       -      -
    851A  LEU      3.0    18.8    +      -       -      +
    852A  SER      3.5     5.4    -      -       -      +
    853A  LEU      3.2     0.2    -      -       -      -
    854A  MET*     1.3    76.4    -      -       -      +
    856A  ALA*     1.3    59.1    +      -       -      +
    858A  ALA*     3.2     3.6    +      -       -      +
    859A  ALA*     2.9    30.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 856 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100A  COA      3.8    25.6    -      -       -      +
    568A  ARG*     4.0     6.7    -      -       -      +
    852A  SER      3.0    13.2    +      -       -      +
    853A  LEU*     3.2     8.7    +      -       +      +
    855A  ALA*     1.3    76.7    -      -       -      +
    857A  LEU*     1.3    57.4    +      -       -      +
    860A  GLY      2.9     7.1    +      -       -      -
    861A  HIS*     2.5    56.6    +      -       +      -
    862A  LEU*     3.7     4.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 857 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    200A  MAH      4.1     2.0    -      -       -      +
    731A  VAL*     4.3    10.3    -      -       +      -
    735A  LYS*     3.6    41.1    -      -       +      +
    853A  LEU*     2.9    36.8    +      -       +      +
    854A  MET*     3.6    10.1    -      -       -      +
    856A  ALA*     1.3    75.4    -      -       -      +
    858A  ALA*     1.3    63.1    +      -       -      +
    860A  GLY*     3.3    11.9    +      -       -      -
    862A  LEU*     4.0    18.4    -      -       +      -
    681B  LEU      3.9    13.0    -      -       -      +
    682B  ALA*     4.4     6.1    -      -       +      -
    683B  VAL*     4.0    36.2    +      -       +      +
    684B  SER*     4.2     8.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 858 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    723A  THR*     3.7    20.7    +      -       -      +
    727A  ALA*     4.0    20.1    -      -       +      +
    728A  MET*     4.3     4.3    -      -       -      +
    731A  VAL*     3.8    24.4    -      -       +      +
    854A  MET      2.9    16.8    +      -       -      +
    855A  ALA*     3.2     4.9    +      -       -      +
    857A  LEU*     1.3    79.0    -      -       -      +
    859A  ALA*     1.3    57.4    +      -       -      +
    860A  GLY      3.7     0.2    +      -       -      -
    681B  LEU      4.8     1.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 859 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    722A  LYS*     3.4    26.7    -      -       +      +
    723A  THR*     4.4     2.9    -      -       -      -
    855A  ALA      2.9    15.3    +      -       -      +
    856A  ALA      4.2     0.2    -      -       -      +
    858A  ALA*     1.3    76.3    -      -       -      +
    860A  GLY*     1.3    61.4    +      -       -      +
    861A  HIS*     3.4    34.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 860 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    856A  ALA      2.9     4.8    +      -       -      -
    857A  LEU*     3.3    11.5    +      -       -      -
    858A  ALA      3.4     0.8    +      -       -      -
    859A  ALA*     1.3    80.0    -      -       -      +
    861A  HIS*     1.3    63.4    +      -       -      +
    862A  LEU      3.5     3.4    +      -       -      -
    863A  VAL      4.9     2.9    +      -       -      -
    665B  GLU*     4.7    10.2    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il