Contacts of the helix formed by residues 1465 - 1492 (chain B) in PDB entry 1G50


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR1465 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1463B  SER*     3.7     6.0    -      -       -      -
   1464B  SER*     1.3    85.4    -      -       -      +
   1466B  LEU*     1.3    75.3    +      -       +      -
   1467B  LYS*     3.2    21.0    +      -       -      +
   1468B  SER*     3.7     0.9    +      -       -      -
   1469B  LEU*     3.3    21.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU1466 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1465B  THR*     1.3    85.3    -      -       +      +
   1467B  LYS*     1.3    54.4    +      -       -      +
   1469B  LEU*     3.1    14.7    +      -       +      +
   1470B  GLU*     2.6    43.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS1467 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1371B  THR*     3.9    28.5    -      -       +      +
   1463B  SER*     4.1    11.7    -      -       -      +
   1465B  THR*     3.2    12.9    +      -       -      +
   1466B  LEU*     1.3    74.9    -      -       -      +
   1468B  SER*     1.3    67.1    +      -       -      +
   1469B  LEU      3.0     1.1    -      -       -      -
   1470B  GLU*     3.1    41.3    +      -       +      +
   1471B  GLU*     3.2    22.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER1468 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1374B  ASP*     5.1     0.8    +      -       -      -
   1461B  PHE*     3.5    26.4    -      -       -      +
   1463B  SER*     2.7    46.1    +      -       -      -
   1464B  SER*     3.9     4.0    -      -       -      -
   1465B  THR      3.7     8.1    +      -       -      -
   1466B  LEU      3.4     0.4    -      -       -      -
   1467B  LYS*     1.3    79.6    -      -       -      +
   1469B  LEU*     1.3    63.7    +      -       -      +
   1471B  GLU*     3.6     9.2    +      -       -      +
   1472B  LYS*     3.0    26.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU1469 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1464B  SER      5.0     4.0    -      -       -      +
   1465B  THR      3.3    15.3    -      -       -      +
   1466B  LEU*     3.1    22.4    +      -       +      +
   1467B  LYS      3.0     0.4    -      -       -      -
   1468B  SER*     1.3    86.0    -      -       -      +
   1470B  GLU*     1.3    64.7    +      -       -      +
   1471B  GLU      3.2     1.6    -      -       -      -
   1472B  LYS*     3.8    32.0    -      -       +      +
   1473B  ASP*     3.2    29.0    +      -       -      +
   2437C  MET*     4.9    10.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU1470 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1466B  LEU*     2.6    31.8    +      -       +      +
   1467B  LYS*     3.1    43.5    +      -       +      +
   1469B  LEU*     1.3    73.9    -      -       -      +
   1471B  GLU*     1.3    60.9    +      -       +      +
   1473B  ASP*     3.0     9.2    -      -       -      +
   1474B  HIS*     3.0    25.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU1471 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1369B  ASP      4.3     2.5    -      -       -      +
   1370B  LEU*     3.0    27.4    -      -       +      +
   1371B  THR*     2.7    39.1    +      -       -      +
   1374B  ASP*     2.8    36.0    -      -       -      +
   1461B  PHE*     4.3     5.4    -      -       +      -
   1463B  SER*     5.3     1.0    +      -       -      -
   1467B  LYS*     3.2    23.9    +      -       +      +
   1468B  SER*     3.7     8.7    -      -       -      +
   1469B  LEU      3.2     0.2    -      -       -      -
   1470B  GLU*     1.3    74.0    -      -       +      +
   1472B  LYS*     1.3    69.8    +      -       -      +
   1473B  ASP      2.9     1.3    -      -       -      -
   1474B  HIS*     2.7    19.8    +      -       -      +
   1475B  ILE*     2.9    17.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS1472 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1458B  VAL*     4.7    14.8    -      -       +      +
   1459B  TYR*     4.7    12.3    -      -       -      +
   1461B  PHE*     4.4    10.9    -      -       +      -
   1468B  SER      3.0    18.4    +      -       -      +
   1469B  LEU*     3.8    28.9    -      -       +      +
   1471B  GLU*     1.3    76.0    -      -       -      +
   1473B  ASP*     1.3    62.0    +      -       -      +
   1475B  ILE*     3.4     5.9    +      -       -      +
   1476B  HIS*     3.0    60.9    +      -       +      +
   2430C  ALA*     4.3     6.1    +      -       -      +
   2433C  SER*     3.6    22.6    +      -       -      -
   2434C  ARG*     4.1    16.0    -      -       -      +
   2437C  MET*     3.7    19.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP1473 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1469B  LEU*     3.2    15.0    +      -       -      +
   1470B  GLU*     3.0    14.6    -      -       -      +
   1471B  GLU      2.8     0.2    +      -       -      -
   1472B  LYS*     1.3    76.8    -      -       -      +
   1474B  HIS*     1.3    67.2    +      -       -      +
   1476B  HIS*     3.1    10.8    +      -       -      +
   1477B  ARG*     2.9    47.1    +      -       -      +
   2437C  MET*     5.0    14.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS1474 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1304B  ASN*     4.3     5.4    -      -       -      -
   1305B  SER*     2.6    39.2    +      -       -      -
   1308B  LEU*     4.0    10.3    -      -       +      -
   1366B  GLY*     2.9    35.6    +      -       -      -
   1369B  ASP*     3.4    12.8    +      -       +      +
   1370B  LEU*     4.6    11.9    -      -       -      +
   1470B  GLU      3.0     9.4    +      -       -      +
   1471B  GLU*     2.7    17.0    +      -       -      +
   1473B  ASP*     1.3    74.4    -      -       -      +
   1475B  ILE*     1.3    59.6    +      -       -      +
   1477B  ARG*     3.1    11.3    +      -       -      +
   1478B  VAL*     2.8    40.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE1475 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1370B  LEU*     4.2    22.9    -      -       +      -
   1378B  LEU*     4.5     9.6    -      -       +      -
   1454B  LEU*     3.4    46.4    -      -       +      +
   1458B  VAL*     3.6    24.7    -      -       +      -
   1461B  PHE*     3.9    25.1    -      -       +      -
   1471B  GLU      2.9    16.4    +      -       -      +
   1472B  LYS      3.7     4.3    -      -       -      +
   1474B  HIS*     1.3    74.6    -      -       +      +
   1476B  HIS*     1.3    60.1    +      -       -      +
   1477B  ARG      2.8     2.0    +      -       -      -
   1478B  VAL*     2.8     5.8    +      -       -      +
   1479B  LEU*     2.5    46.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with HIS1476 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1455B  ASN*     6.2     0.2    -      -       -      -
   1458B  VAL*     4.4    12.6    -      -       +      +
   1459B  TYR*     4.2     6.4    -      +       -      -
   1472B  LYS*     3.0    50.4    +      -       +      +
   1473B  ASP*     3.4    11.5    +      -       -      +
   1475B  ILE*     1.3    78.0    -      -       -      +
   1477B  ARG*     1.3    56.8    +      -       -      +
   1479B  LEU*     3.9    14.6    -      -       +      +
   1480B  ASP*     2.9    35.1    +      -       -      +
   2434C  ARG*     2.6    52.9    +      -       -      +
   2437C  MET*     3.6    12.9    -      -       +      +
   2506C  GLN*     4.4     7.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG1477 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1304B  ASN*     5.2     3.5    -      -       -      +
   1308B  LEU*     3.1    49.0    -      -       +      +
   1473B  ASP*     2.9    36.2    +      -       -      +
   1474B  HIS*     3.1    13.7    -      -       -      +
   1475B  ILE      2.8     0.4    +      -       -      -
   1476B  HIS*     1.3    75.7    -      -       -      +
   1478B  VAL*     1.3    63.8    +      -       -      +
   1480B  ASP*     3.0    23.3    -      -       +      +
   1481B  LYS*     3.1     7.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL1478 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1307B  ALA*     4.0    20.6    -      -       +      -
   1308B  LEU*     4.7     6.7    -      -       +      +
   1315B  MET*     5.0     7.2    -      -       +      -
   1365B  PRO*     3.7    21.1    -      -       +      +
   1366B  GLY*     4.1     3.8    -      -       -      -
   1454B  LEU*     4.2     9.0    -      -       +      -
   1474B  HIS*     2.8    50.0    +      -       +      +
   1475B  ILE*     2.8     5.8    +      -       -      +
   1477B  ARG*     1.3    68.6    -      -       -      +
   1479B  LEU*     1.3    67.3    +      -       -      +
   1481B  LYS*     3.0    18.3    +      -       +      +
   1482B  ILE*     3.1    28.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU1479 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1451B  ILE*     3.7    32.4    -      -       +      +
   1454B  LEU*     3.7    20.9    -      -       +      -
   1455B  ASN*     3.8    26.9    -      -       +      +
   1458B  VAL*     5.6     0.7    -      -       +      -
   1475B  ILE*     2.5    42.0    +      -       +      +
   1476B  HIS*     3.9    14.8    -      -       +      +
   1478B  VAL*     1.3    73.1    -      -       -      +
   1480B  ASP*     1.3    61.7    +      -       -      +
   1482B  ILE*     3.1    25.3    +      -       +      +
   1483B  THR*     3.2    15.3    +      -       -      -
   2509C  LEU*     4.3    13.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP1480 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1476B  HIS*     2.9    22.1    +      -       -      +
   1477B  ARG*     3.0    19.4    -      -       +      +
   1478B  VAL      3.0     0.4    -      -       -      -
   1479B  LEU*     1.3    77.0    -      -       -      +
   1481B  LYS*     1.3    58.6    +      -       -      +
   1483B  THR*     3.2    18.7    +      -       -      -
   1484B  ASP*     3.3     0.9    -      -       -      +
   2502C  GLN*     3.0    61.6    +      -       -      +
   2506C  GLN*     3.1    27.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS1481 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1307B  ALA*     3.8    12.3    -      -       +      +
   1308B  LEU*     3.2    24.8    +      -       -      +
   1309B  SER      4.0     1.0    -      -       -      -
   1310B  LEU*     2.8    45.0    +      -       +      +
   1312B  ALA*     4.8     6.5    -      -       -      +
   1315B  MET*     3.3    28.3    -      -       +      -
   1477B  ARG      3.1     9.5    +      -       -      +
   1478B  VAL*     3.0    12.8    +      -       +      +
   1480B  ASP*     1.3    72.8    -      -       -      +
   1482B  ILE*     1.3    56.0    +      -       -      +
   1483B  THR      3.0     1.8    -      -       -      -
   1484B  ASP*     2.7    39.5    +      -       +      +
   1485B  THR*     2.9    13.6    +      -       -      +
   2502C  GLN*     4.5     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE1482 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1315B  MET*     3.7    17.7    -      -       +      -
   1319B  LEU*     5.4     4.7    -      -       +      -
   1364B  VAL*     5.9     1.3    -      -       +      -
   1447B  CYS*     4.0    24.2    -      -       +      +
   1450B  SER*     4.4    10.3    -      -       -      +
   1451B  ILE*     3.8    29.2    -      -       +      -
   1454B  LEU*     4.2     8.5    -      -       +      -
   1478B  VAL*     3.1    27.7    +      -       +      +
   1479B  LEU*     3.1    30.5    +      -       +      +
   1481B  LYS*     1.3    76.4    -      -       -      +
   1483B  THR*     1.3    62.2    +      -       -      +
   1485B  THR*     3.2    10.4    +      -       -      -
   1486B  LEU*     3.1    22.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR1483 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1451B  ILE*     5.8     1.3    -      -       -      +
   1479B  LEU      3.2    15.4    +      -       -      -
   1480B  ASP*     3.2    14.6    +      -       -      -
   1481B  LYS      3.0     0.4    -      -       -      -
   1482B  ILE*     1.3    77.5    -      -       -      +
   1484B  ASP*     1.3    57.6    +      -       -      +
   1486B  LEU*     3.3     9.5    +      -       -      +
   1487B  ILE*     3.0    31.9    +      -       -      +
   1504B  LEU*     4.1    14.1    -      -       +      +
   2501C  HIS*     3.8     9.4    -      -       +      -
   2502C  GLN*     3.6    26.1    +      -       +      +
   2505C  ALA*     3.3    34.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP1484 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1312B  ALA*     5.2     4.3    -      -       +      -
   1480B  ASP      3.3     4.4    -      -       -      +
   1481B  LYS*     2.7    21.5    +      -       +      +
   1483B  THR*     1.3    75.1    -      -       -      +
   1485B  THR*     1.3    58.0    +      -       -      +
   1486B  LEU      3.0     2.0    -      -       -      -
   1487B  ILE*     3.9     6.8    -      -       -      +
   1488B  HIS*     2.9    32.4    +      -       -      +
   2498C  GLN*     3.6    27.3    +      -       -      +
   2501C  HIS*     5.1     2.4    +      -       -      +
   2502C  GLN*     2.5    46.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR1485 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1312B  ALA*     3.2    31.1    +      -       -      +
   1315B  MET*     3.0    38.1    -      -       +      +
   1316B  VAL*     3.5    17.6    -      -       +      +
   1447B  CYS*     4.1    13.4    -      -       -      -
   1481B  LYS*     2.9    14.9    +      -       -      +
   1482B  ILE*     3.2     9.8    +      -       -      -
   1484B  ASP*     1.3    77.0    -      -       -      +
   1486B  LEU*     1.3    57.4    +      -       -      +
   1488B  HIS*     3.8     5.3    -      -       -      +
   1489B  LEU*     3.4    24.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU1486 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1443B  GLU      5.2     0.2    -      -       -      -
   1444B  GLU*     3.7    30.1    -      -       +      +
   1447B  CYS*     3.2    41.7    -      -       +      -
   1448B  LEU*     5.2     7.2    -      -       +      +
   1451B  ILE*     4.4    15.7    -      -       +      -
   1482B  ILE      3.1    11.0    +      -       -      +
   1483B  THR*     3.5     8.7    -      -       -      +
   1484B  ASP      3.0     0.6    -      -       -      -
   1485B  THR*     1.3    77.0    -      -       -      +
   1487B  ILE*     1.3    68.2    +      -       -      +
   1488B  HIS      3.0     1.1    -      -       -      -
   1489B  LEU*     3.2     6.7    +      -       +      +
   1490B  MET*     2.9    32.7    +      -       +      +
   1504B  LEU*     4.5    20.2    -      -       +      -
   1507B  LEU*     5.1    14.1    -      -       +      -
   1508B  LEU*     5.3     3.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE1487 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1483B  THR*     3.0    23.8    +      -       +      +
   1484B  ASP*     3.9     6.5    -      -       -      +
   1486B  LEU*     1.3    74.3    -      -       -      +
   1488B  HIS*     1.3    67.2    +      -       -      +
   1490B  MET*     3.1    25.2    +      -       +      +
   1491B  ALA*     2.9    15.7    +      -       +      +
   1500B  GLN*     3.2    25.6    -      -       +      +
   1504B  LEU*     4.1    15.0    -      -       +      -
   2501C  HIS*     3.1    63.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS1488 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1312B  ALA*     3.6    24.0    +      -       +      -
   1313B  ASP*     3.2    26.7    +      -       -      -
   1484B  ASP      2.9    19.8    +      -       -      +
   1485B  THR*     3.8     7.4    +      -       -      +
   1487B  ILE*     1.3    73.0    -      -       -      +
   1489B  LEU*     1.3    60.2    +      -       +      +
   1490B  MET      2.5    16.1    +      -       -      -
   1491B  ALA*     2.5    20.0    +      -       -      +
   1492B  LYS*     2.8    41.6    +      -       +      -
----------------------------------------------------------
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Residues in contact with LEU1489 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1316B  VAL*     4.0    22.2    -      -       +      -
   1441B  GLN*     5.6     1.1    -      -       +      -
   1443B  GLU*     3.1    56.8    -      -       +      +
   1444B  GLU*     4.8    13.6    -      -       +      +
   1447B  CYS*     5.7     2.2    -      -       -      -
   1485B  THR*     3.4    13.6    +      -       +      +
   1486B  LEU*     3.2    10.1    +      -       +      +
   1488B  HIS*     1.3    86.9    +      -       +      +
   1490B  MET*     1.3    59.2    +      -       +      +
   1492B  LYS*     4.0    10.6    +      -       +      +
   1493B  ALA*     4.1    13.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET1490 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1444B  GLU*     4.4    11.4    -      -       +      +
   1486B  LEU*     2.9    13.4    +      -       +      +
   1487B  ILE*     3.3    30.1    -      -       +      +
   1488B  HIS      2.5     6.3    +      -       -      -
   1489B  LEU*     1.3    76.1    -      -       +      +
   1491B  ALA*     1.3    60.0    +      -       -      +
   1492B  LYS      3.3     1.1    -      -       -      -
   1493B  ALA*     3.8     4.9    +      -       -      +
   1495B  LEU*     3.0    36.9    +      -       +      +
   1500B  GLN*     2.9    43.5    -      -       +      +
   1503B  ARG*     3.3    46.2    -      -       -      +
   1504B  LEU*     4.0    11.9    -      -       +      +
   1507B  LEU*     4.7     4.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA1491 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1487B  ILE*     2.9     5.7    +      -       +      +
   1488B  HIS*     2.5    16.2    +      -       -      +
   1490B  MET*     1.3    69.7    -      -       -      +
   1492B  LYS*     1.3    50.2    +      -       -      +
   1493B  ALA      2.7    16.6    +      -       -      -
   1494B  GLY*     3.1    12.3    +      -       -      -
   1495B  LEU      4.4     2.9    -      -       -      +
   1497B  LEU*     5.6     1.8    -      -       +      -
   1500B  GLN*     3.3    30.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with LYS1492 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   1488B  HIS*     2.8    41.5    +      -       +      +
   1489B  LEU*     4.1    12.3    -      -       +      +
   1491B  ALA*     1.3    74.1    -      -       -      +
   1493B  ALA*     1.3    59.4    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il