Contacts of the helix formed by residues 2371 - 2394 (chain C) in PDB entry 1G50
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR2371 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2370C LEU* 1.3 71.9 - - - +
2372C LEU* 1.3 67.8 + - - +
2373C HIS* 4.4 5.2 - - - -
2374C ASP* 2.7 42.9 + - - -
2375C GLN* 3.0 9.1 + - - +
2467C LYS* 4.0 28.9 - - + +
2471C GLU* 2.7 22.5 + - - +
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Residues in contact with LEU2372 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2362C LYS* 5.8 5.2 - - - +
2370C LEU 3.5 1.1 + - - +
2371C THR* 1.3 69.4 - - - +
2373C HIS* 1.3 69.4 + - + +
2375C GLN* 3.0 30.8 + - - +
2376C VAL* 2.9 29.2 + - + +
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Residues in contact with HIS2373 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2371C THR* 3.1 4.0 - - - +
2372C LEU* 1.3 83.6 - - + +
2374C ASP* 1.3 58.6 + - - +
2376C VAL* 3.4 12.0 + - + +
2377C HIS* 2.9 27.0 + - - +
2462C LEU* 3.8 30.0 - - + +
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Residues in contact with ASP2374 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2370C LEU* 4.6 3.4 - - + -
2371C THR* 2.7 32.2 + - - +
2373C HIS* 1.3 70.6 - - - +
2375C GLN* 1.3 58.5 + - - +
2377C HIS* 3.3 7.2 - - - +
2378C LEU* 2.8 35.3 + - - +
2461C PHE* 3.1 37.8 - - + -
2462C LEU* 2.9 28.8 + - - +
2463C SER* 4.3 5.5 + - - -
2468C SER* 5.0 1.4 + - - -
2471C GLU* 2.9 25.8 - - - +
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Residues in contact with GLN2375 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2362C LYS* 3.8 17.5 - - - +
2367C PHE* 3.3 60.8 - - + +
2368C VAL* 3.7 21.4 + - - +
2370C LEU* 2.8 27.6 + - + -
2371C THR 3.0 10.2 + - - +
2372C LEU* 3.0 35.2 + - - +
2374C ASP* 1.3 74.6 - - - +
2376C VAL* 1.3 67.8 + - - +
2378C LEU* 3.4 2.2 + - - +
2379C LEU* 3.2 24.6 + - - +
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Residues in contact with VAL2376 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2362C LYS* 5.5 6.5 - - - +
2372C LEU* 2.9 22.8 + - + +
2373C HIS* 3.5 13.7 - - + +
2375C GLN* 1.3 75.0 - - + +
2377C HIS* 1.3 65.7 + - - +
2379C LEU* 2.7 26.0 + - + +
2380C GLU* 3.0 32.0 + - + +
2542C GLU* 5.4 6.5 - - - +
2543C MET* 5.8 2.7 - - + -
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Residues in contact with HIS2377 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2373C HIS 2.9 18.3 + - - +
2374C ASP* 3.3 9.4 - - - +
2376C VAL* 1.3 75.2 - - - +
2378C LEU* 1.3 65.5 + - - +
2380C GLU* 3.5 17.8 + - + +
2381C CYS* 2.8 36.3 + - + +
2457C GLY 3.1 14.3 + - - -
2460C THR* 2.7 39.2 + - - -
2461C PHE* 3.0 40.6 + + - -
2462C LEU* 4.2 11.9 - - + -
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Residues in contact with LEU2378 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2367C PHE* 3.8 12.8 - - + -
2370C LEU* 3.6 31.0 - - + -
2374C ASP 2.8 20.9 + - - +
2375C GLN 3.6 4.5 - - - +
2376C VAL 3.2 0.2 - - - -
2377C HIS* 1.3 75.2 + - - +
2379C LEU* 1.3 62.9 + - - +
2381C CYS* 3.2 3.8 + - - +
2382C ALA* 3.1 26.2 + - - +
2453C LEU* 3.5 20.4 - - + +
2454C LEU* 3.7 36.3 - - + +
2456C SER 4.1 4.7 - - - +
2457C GLY 3.6 12.3 - - - +
2458C VAL* 4.5 0.4 - - - -
2461C PHE* 3.3 27.1 - - + -
2475C ILE* 4.6 1.6 - - + -
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Residues in contact with LEU2379 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2357C MET* 4.6 23.6 - - + +
2358C ILE* 4.7 18.2 - - + -
2361C ALA* 3.4 29.2 - - + -
2362C LYS* 4.5 13.5 - - - +
2367C PHE* 4.0 13.5 - - + -
2375C GLN 3.2 18.1 + - - +
2376C VAL* 2.7 16.3 + - + +
2378C LEU* 1.3 70.4 - - - +
2380C GLU* 1.3 55.7 + - - +
2381C CYS 2.9 3.8 - - - -
2382C ALA* 2.8 4.2 + - - +
2383C TRP* 2.6 38.1 + - + +
2386C ILE* 5.2 0.4 - - + -
2453C LEU* 3.7 15.3 - - + -
2543C MET* 4.7 4.3 - - - -
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Residues in contact with GLU2380 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2376C VAL* 3.0 31.3 + - + +
2377C HIS* 3.5 22.5 + - + +
2379C LEU* 1.3 77.0 - - - +
2381C CYS* 1.3 60.0 + - + +
2383C TRP* 3.0 8.4 + - - -
2542C GLU* 5.0 3.3 - - - +
2543C MET* 3.5 38.0 - - + +
2546C ALA* 3.8 25.6 - - + +
2547C HIS* 2.9 26.0 - - - -
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Residues in contact with CYS2381 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1516B HIS* 5.4 9.7 - - - -
2377C HIS* 2.8 28.6 + - + +
2378C LEU 3.6 4.9 - - - +
2379C LEU 2.9 0.2 + - - -
2380C GLU* 1.3 81.4 - - + +
2382C ALA* 1.3 57.0 + - - +
2383C TRP* 3.9 0.4 - - - -
2385C GLU* 4.2 6.1 - - - +
2456C SER* 4.1 6.7 - - - +
2457C GLY* 3.5 29.2 - - - -
2460C THR* 4.2 11.4 - - - -
2515C ARG* 5.0 5.5 + - - -
2547C HIS* 4.1 16.6 + - - -
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Residues in contact with ALA2382 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2378C LEU 3.1 11.7 + - - +
2379C LEU 2.8 2.0 + - - +
2381C CYS* 1.3 80.0 - - - +
2383C TRP* 1.3 66.3 + - - +
2384C LEU 3.3 2.9 - - - -
2385C GLU* 2.9 14.3 + - - +
2386C ILE* 2.9 30.3 + - + +
2452C ILE* 3.4 31.2 - - + +
2453C LEU* 4.6 1.3 - - - -
2456C SER* 3.5 13.7 - - - +
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Residues in contact with TRP2383 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2350C ALA* 5.2 0.2 - - + -
2354C LEU* 3.5 32.3 - - + -
2357C MET* 3.2 23.3 - - - +
2379C LEU* 2.6 19.3 + - + +
2380C GLU 3.0 26.5 - - - -
2381C CYS 4.9 0.2 - - - -
2382C ALA* 1.3 71.7 - - - +
2384C LEU* 1.3 85.4 + - + +
2386C ILE* 4.7 1.3 - - - +
2387C LEU* 2.9 44.3 + - + +
2522C MET* 3.4 25.5 - - + +
2525C LEU* 4.4 11.9 - - + -
2540C LEU* 3.4 34.5 - - + -
2543C MET* 3.3 45.4 + - + -
2544C LEU* 4.3 4.9 - - + -
2547C HIS* 3.6 12.7 - + - -
2600C EST 5.4 1.8 - - + -
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Residues in contact with LEU2384 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2382C ALA 3.3 0.4 - - - -
2383C TRP* 1.3 115.5 - - + +
2385C GLU* 1.3 63.7 + - - +
2387C LEU* 3.0 10.5 + - + +
2388C MET* 2.9 44.8 + - + +
2518C SER* 3.1 39.0 - - - +
2521C GLY 3.8 7.4 - - - +
2522C MET* 3.6 28.5 - - + +
2600C EST 4.3 23.3 - - + -
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Residues in contact with GLU2385 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1512B SER* 4.2 2.8 + - - -
2381C CYS 4.2 2.8 - - - +
2382C ALA* 2.9 16.3 + - - +
2384C LEU* 1.3 77.4 - - - +
2386C ILE* 1.3 60.2 + - - +
2388C MET* 3.9 1.1 + - - -
2389C ILE 3.5 12.0 + - - -
2452C ILE* 3.6 21.6 - - + +
2456C SER* 2.6 35.5 + - - -
2511C LEU* 4.3 3.6 - - - +
2514C ILE* 3.5 37.3 - - + +
2515C ARG* 2.8 42.5 + - - +
2518C SER* 3.4 18.4 + - - +
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Residues in contact with ILE2386 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2357C MET* 3.2 28.7 - - + -
2360C TRP* 3.9 13.5 - - + -
2379C LEU* 5.2 1.1 - - + +
2382C ALA 2.9 22.9 + - - +
2383C TRP* 3.6 1.1 - - - +
2385C GLU* 1.3 73.5 - - - +
2387C LEU* 1.3 67.6 + - - +
2388C MET 2.8 3.8 + - - -
2389C ILE* 3.0 25.1 + - - +
2390C GLY* 3.3 3.8 + - - -
2449C LYS* 3.9 37.0 - - + +
2452C ILE* 3.7 18.6 - - + -
2453C LEU* 3.9 36.3 - - + -
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Residues in contact with LEU2387 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2350C ALA* 4.0 21.8 - - + +
2353C GLU* 3.2 43.6 - - + +
2354C LEU* 3.9 9.4 - - + +
2357C MET* 3.5 13.1 - - + +
2383C TRP* 2.9 47.6 + - + +
2384C LEU* 3.4 17.0 - - + +
2386C ILE* 1.3 75.8 - - - +
2388C MET* 1.3 59.5 + - - +
2390C GLY* 3.9 1.3 + - - -
2391C LEU 3.4 12.0 + - - -
2394C ARG* 4.1 1.0 + - - -
2600C EST 3.3 35.3 + - + +
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Residues in contact with MET2388 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2384C LEU* 2.9 32.2 + - + +
2385C GLU 4.2 4.0 - - - +
2386C ILE 2.8 3.4 + - - -
2387C LEU* 1.3 71.4 - - - +
2389C ILE* 1.3 66.4 + - - +
2390C GLY 3.0 1.7 + - - -
2391C LEU* 3.1 6.7 + - - +
2392C VAL* 2.9 28.8 + - + +
2424C ILE* 4.5 8.1 - - + -
2428C LEU* 4.1 13.9 - - + -
2514C ILE* 4.6 7.2 - - + +
2517C MET* 3.4 45.8 - - + +
2518C SER* 3.6 13.5 - - - -
2521C GLY* 4.1 1.3 - - - -
2600C EST 3.6 50.3 - - + -
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Residues in contact with ILE2389 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2385C GLU 3.5 9.4 + - - +
2386C ILE* 3.0 22.6 + - + +
2388C MET* 1.3 77.9 - - - +
2390C GLY* 1.3 65.3 + - - +
2392C VAL* 3.7 6.9 + - - +
2393C TRP* 3.1 21.7 + - - +
2431C THR* 6.5 0.2 - - - -
2435C PHE* 4.1 16.0 - - + -
2445C PHE* 3.5 18.8 - - + -
2448C LEU* 3.6 31.0 - - + -
2449C LYS* 3.8 22.7 - - + +
2452C ILE* 3.9 16.8 - - + -
2511C LEU* 4.8 0.7 - - + -
2514C ILE* 4.0 23.4 - - + +
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Residues in contact with GLY2390 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2386C ILE 3.3 6.1 + - - -
2387C LEU 4.2 1.1 - - - -
2388C MET 3.0 0.8 - - - -
2389C ILE* 1.3 82.5 - - - +
2391C LEU* 1.3 57.2 + - - +
2393C TRP* 2.6 25.0 + - - +
2394C ARG* 2.8 29.3 + - - +
2445C PHE* 3.8 18.2 - - - -
2449C LYS* 5.7 3.1 - - - -
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Residues in contact with LEU2391 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2387C LEU 3.4 9.2 + - - +
2388C MET 3.1 6.4 + - - +
2390C GLY* 1.3 71.7 - - - +
2392C VAL* 1.3 57.4 + - - +
2394C ARG* 3.0 29.8 + - - +
2395C SER* 2.7 32.3 + - - +
2402C LEU* 4.1 10.5 - - + -
2403C LEU 3.7 2.7 - - - -
2404C PHE* 3.6 58.1 - - + +
2428C LEU* 3.4 35.7 - - + -
2600C EST 3.6 21.3 - - + -
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Residues in contact with VAL2392 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2388C MET* 2.9 22.8 + - + +
2389C ILE* 3.7 7.9 - - - +
2391C LEU* 1.3 73.6 - - + +
2393C TRP* 1.3 64.6 + - - +
2395C SER* 3.1 13.4 + - - -
2396C MET* 3.1 12.6 + - - +
2402C LEU* 5.4 0.9 - - + -
2428C LEU* 3.7 37.2 - - + +
2431C THR* 3.6 15.5 - - + -
2432C SER* 3.3 35.4 + - - +
2435C PHE* 3.6 21.1 - - + -
2514C ILE* 6.5 0.2 - - + -
2517C MET* 5.4 1.6 - - + -
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Residues in contact with TRP2393 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2389C ILE 3.1 14.9 + - - +
2390C GLY* 2.6 16.5 + - - +
2392C VAL* 1.3 68.0 - - - +
2394C ARG* 1.3 65.5 + - + -
2395C SER 2.9 9.6 + - - -
2396C MET* 3.1 35.8 + - + +
2435C PHE* 4.6 4.7 - + + -
2440C LEU* 3.0 47.3 - - + -
2442C GLY* 3.0 43.3 - - - -
2445C PHE* 3.6 46.2 - + + -
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Residues in contact with ARG2394 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2326C ILE* 3.3 37.5 - - + +
2353C GLU* 3.5 19.2 + - - -
2387C LEU 4.1 0.6 + - - -
2390C GLY* 2.8 25.2 + - - +
2391C LEU* 3.0 29.4 + - - +
2393C TRP* 1.3 84.3 - - + +
2395C SER* 1.3 58.9 + - - +
2396C MET 3.6 0.2 - - - -
2398C HIS* 4.2 4.3 + - - -
2403C LEU* 3.1 48.4 + - + +
2404C PHE 3.1 21.5 + - - -
2600C EST 2.9 28.9 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il