Contacts of the helix formed by residues 71 - 119 (chain B) in PDB entry 1G73
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 71 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B ASN* 1.3 87.3 + - - +
72B GLU* 1.3 78.2 + - - -
73B GLU 2.8 2.4 + - - -
74B GLU* 3.0 8.7 + - - +
75B ASP* 3.0 21.8 + - - +
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Residues in contact with GLU 72 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B ASN* 2.6 21.9 - - - +
71B SER* 1.3 86.5 - - - +
73B GLU* 1.3 77.1 + - + +
75B ASP* 3.5 11.7 - - - +
76B GLU* 3.2 26.2 + - - +
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Residues in contact with GLU 73 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68B LYS 4.2 5.0 - - - +
69B MET* 3.5 17.1 - - + -
70B ASN* 2.7 36.6 + - - +
71B SER 2.8 1.6 + - - -
72B GLU* 1.3 89.8 - - + +
74B GLU* 1.3 66.4 + - - +
76B GLU* 2.9 22.7 + - - +
77B VAL* 3.4 9.8 + - - +
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Residues in contact with GLU 74 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B TYR* 3.2 36.7 + - + +
66B LEU* 4.7 5.0 - - - +
69B MET* 3.6 36.8 - - + +
70B ASN* 4.3 0.8 + - - -
71B SER 3.0 14.6 + - - +
73B GLU* 1.3 78.7 - - - +
75B ASP* 1.3 62.7 + - - +
77B VAL* 3.2 5.4 + - - +
78B TRP* 3.0 21.5 + - + +
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Residues in contact with ASP 75 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B SER 3.0 12.8 + - - +
72B GLU* 3.5 14.7 - - - +
73B GLU 3.1 0.2 - - - -
74B GLU* 1.3 78.0 - - - +
76B GLU* 1.3 80.6 + - - +
78B TRP* 3.2 7.9 + - - +
79B GLN* 2.9 46.8 + - - +
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Residues in contact with GLU 76 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B GLU 3.2 12.2 + - - +
73B GLU* 2.9 12.2 + - - +
75B ASP* 1.3 99.5 - - - +
77B VAL* 1.3 67.9 + - + +
78B TRP 3.1 0.5 + - - -
79B GLN* 3.2 20.1 + - - +
80B VAL* 3.3 21.6 + - - +
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Residues in contact with VAL 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B LEU* 4.4 9.0 - - + +
61B GLN* 4.9 10.3 - - - +
62B TYR* 3.5 37.2 - - + +
65B LEU* 4.2 14.4 - - + -
69B MET* 4.1 18.6 - - + -
73B GLU 3.7 13.9 - - - +
74B GLU 3.2 6.3 + - - +
76B GLU* 1.3 76.9 - - + +
78B TRP* 1.3 57.6 + - - +
80B VAL* 3.4 8.0 + - - +
81B ILE* 3.0 31.0 + - + +
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Residues in contact with TRP 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59B TYR* 5.1 7.4 - + - -
62B TYR* 3.3 44.6 - + + -
74B GLU* 3.0 13.6 + - + +
75B ASP* 3.4 12.8 - - - +
76B GLU 3.1 0.2 - - - -
77B VAL* 1.3 75.5 - - - +
79B GLN* 1.3 69.9 + - - +
80B VAL 3.1 1.8 - - - -
81B ILE* 3.2 30.1 + - + +
82B ILE* 3.1 50.6 + - + +
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Residues in contact with GLN 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75B ASP* 2.9 43.7 + - - +
76B GLU* 3.2 13.9 + - - +
78B TRP* 1.3 79.9 - - - +
80B VAL* 1.3 62.8 + - + +
82B ILE* 3.5 24.8 + - - +
83B GLY* 3.5 15.4 + - - -
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Residues in contact with VAL 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B LEU* 3.6 28.3 - - + -
76B GLU* 3.3 15.0 + - - +
77B VAL* 3.5 10.5 - - - +
78B TRP 3.1 0.2 - - - -
79B GLN* 1.3 78.2 - - + +
81B ILE* 1.3 64.9 + - - +
82B ILE 3.2 0.2 - - - -
83B GLY* 3.4 2.2 + - - -
84B ALA* 3.0 21.1 + - - +
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Residues in contact with ILE 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55B LEU* 3.8 1.8 - - + +
58B LEU* 4.2 24.5 - - + +
59B TYR* 3.4 48.9 - - + +
62B TYR* 3.8 32.5 - - + -
77B VAL* 3.0 21.0 + - + +
78B TRP* 3.2 32.9 + - + +
80B VAL* 1.3 76.9 - - - +
82B ILE* 1.3 59.0 + - + +
84B ALA* 3.4 2.8 + - - +
85B ARG* 2.9 28.4 + - + +
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Residues in contact with ILE 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78B TRP* 3.1 41.7 + - + +
79B GLN* 3.6 28.5 - - - +
80B VAL 3.2 0.2 - - - -
81B ILE* 1.3 76.0 - - + +
83B GLY* 1.3 66.8 + - - +
84B ALA 3.1 1.3 - - - -
85B ARG* 3.0 9.7 + - + +
86B ALA* 3.0 22.0 + - + +
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Residues in contact with GLY 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79B GLN 3.5 6.9 + - - -
80B VAL* 3.4 6.5 + - - -
82B ILE* 1.3 81.6 - - - +
84B ALA* 1.3 56.4 + - - +
86B ALA* 3.4 8.3 + - - +
87B GLU* 2.9 31.8 + - - +
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Residues in contact with ALA 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51B ALA* 4.8 4.4 - - - +
54B THR* 5.2 5.2 - - + -
55B LEU* 3.6 17.2 - - + +
58B LEU* 3.5 23.3 - - + -
80B VAL* 3.0 17.6 + - + +
81B ILE 3.4 6.7 - - - +
82B ILE 3.1 0.2 - - - -
83B GLY* 1.3 73.1 - - - +
85B ARG* 1.3 60.1 + - - +
87B GLU* 3.5 6.3 + - - +
88B MET* 2.9 30.1 + - - +
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Residues in contact with ARG 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55B LEU* 3.8 15.0 - - + +
59B TYR* 3.3 25.8 + - - +
81B ILE* 2.9 17.7 + - + +
82B ILE* 3.0 13.7 + - + +
84B ALA* 1.3 76.7 - - - +
86B ALA* 1.3 57.5 + - - +
88B MET* 3.2 27.5 + - - +
89B THR* 3.0 37.0 + - - -
153B LEU* 5.0 4.9 - - - +
157B GLN* 3.9 23.2 + - - +
270D PHE* 6.3 0.8 - - - -
274D THR* 5.2 8.9 + - - -
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Residues in contact with ALA 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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82B ILE* 3.0 12.7 + - + +
83B GLY* 3.6 11.2 - - - +
85B ARG* 1.3 77.7 - - - +
87B GLU* 1.3 51.6 - - - +
89B THR* 3.1 7.8 + - - -
90B SER* 2.7 39.9 + - - +
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Residues in contact with GLU 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51B ALA* 4.1 10.5 - - + +
83B GLY 2.9 17.5 + - - +
84B ALA* 3.7 8.1 - - - +
86B ALA* 1.3 75.3 - - - +
88B MET* 1.3 63.2 + - - +
90B SER* 3.9 6.9 - - - -
91B LYS* 3.0 60.4 + - - +
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Residues in contact with MET 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48B TYR* 3.5 25.4 - - + +
51B ALA* 3.6 19.9 - - + +
52B VAL* 4.1 21.1 - - + -
55B LEU* 3.9 10.1 - - + -
84B ALA 2.9 18.7 + - - +
85B ARG* 3.4 39.3 - - - +
86B ALA 3.2 0.2 - - - -
87B GLU* 1.3 76.9 - - - +
89B THR* 1.3 63.5 + - - +
91B LYS* 3.4 0.5 + - - +
92B HIS* 3.0 30.2 + - + +
153B LEU* 3.6 30.5 - - + -
270D PHE* 5.9 4.7 - - + -
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Residues in contact with THR 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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85B ARG* 3.0 20.3 + - - -
86B ALA* 3.4 10.0 - - - -
88B MET* 1.3 84.8 - - - +
90B SER* 1.3 59.9 + - - +
92B HIS* 3.2 7.2 + - + +
93B GLN* 3.0 50.9 + - + +
292D LEU 5.1 6.1 - - - +
293D GLY* 5.2 10.1 - - - +
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Residues in contact with SER 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86B ALA* 2.7 22.9 + - - +
87B GLU* 3.9 8.7 - - - -
88B MET 3.4 0.2 - - - -
89B THR* 1.3 72.7 - - - +
91B LYS* 1.3 62.3 + - - +
93B GLN* 3.6 16.1 + - - +
94B GLU* 3.1 27.9 + - - +
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Residues in contact with LYS 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44B ALA* 4.5 2.4 - - - +
47B GLU* 3.5 43.9 + - + +
48B TYR* 3.8 22.8 - - + +
51B ALA* 4.4 2.7 - - + -
87B GLU* 3.0 55.1 + - - +
88B MET 3.8 4.3 - - - +
90B SER* 1.3 76.8 - - - +
92B HIS* 1.3 60.0 + - - +
94B GLU* 3.4 9.0 + - + +
95B TYR* 3.1 28.6 + - - +
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Residues in contact with HIS 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48B TYR* 3.4 35.6 + + + -
88B MET* 3.0 17.5 + - + +
89B THR* 3.2 14.3 + - + +
91B LYS* 1.3 75.1 - - - +
93B GLN* 1.3 60.9 + - + +
95B TYR* 3.3 29.0 + + - +
96B LEU* 2.8 44.0 + - + +
150B GLU* 3.9 6.5 + - - -
261D SER* 5.5 0.4 - - - -
262D MET* 3.8 29.5 - - + +
270D PHE* 6.3 1.2 - + - -
271D THR* 5.3 4.5 - - + +
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Residues in contact with GLN 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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89B THR* 3.0 32.5 + - + +
90B SER* 3.8 18.1 + - - +
92B HIS* 1.3 75.0 - - + +
94B GLU* 1.3 66.0 + - - +
96B LEU* 3.5 11.8 + - + +
97B LYS* 3.1 24.1 + - - +
292D LEU 3.9 15.3 - - - +
293D GLY 5.3 1.4 - - - +
294D GLU* 6.2 0.2 - - - +
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Residues in contact with GLU 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44B ALA* 5.3 4.3 - - + +
90B SER 3.1 18.8 + - - +
91B LYS* 3.7 11.2 - - + +
92B HIS 3.3 0.4 - - - -
93B GLN* 1.3 75.5 - - - +
95B TYR* 1.3 58.5 + - - +
97B LYS* 2.9 42.2 + - - +
98B LEU* 3.0 54.9 + - - +
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Residues in contact with TYR 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41B LEU* 3.5 7.4 - - + +
44B ALA* 3.9 26.4 - - + +
45B ILE* 3.8 35.9 - - + -
48B TYR* 3.8 33.2 - + + -
91B LYS 3.1 15.6 + - - +
92B HIS* 3.3 27.2 + + - +
94B GLU* 1.3 74.7 - - - +
96B LEU* 1.3 62.6 + - + +
98B LEU* 3.2 1.0 + - - +
99B GLU* 2.8 34.9 + - - +
143B HIS* 2.9 33.3 + - - -
146B SER* 4.4 2.7 + - - -
150B GLU* 5.7 0.4 - - - -
261D SER* 3.1 25.3 - - - -
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Residues in contact with LEU 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92B HIS* 2.8 48.3 + - + +
93B GLN* 3.9 10.3 - - + +
95B TYR* 1.3 74.6 - - + +
97B LYS* 1.3 61.9 + - - +
99B GLU* 3.2 15.3 + - - +
100B THR* 3.3 8.9 + - - -
259D ASN* 3.1 31.0 - - + +
261D SER* 3.6 23.6 - - - +
262D MET* 4.5 12.3 - - + -
290D TYR* 4.0 27.1 - - + +
292D LEU* 5.6 3.4 - - + -
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Residues in contact with LYS 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A GLU* 3.6 40.8 - - + +
93B GLN 3.1 18.3 + - - +
94B GLU* 2.9 32.7 + - - +
96B LEU* 1.3 77.3 - - - +
98B LEU* 1.3 75.2 + - + +
99B GLU 3.4 0.7 + - - -
100B THR* 3.4 12.9 + - - -
101B THR* 3.3 17.6 + - - +
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Residues in contact with LEU 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B THR* 4.8 2.3 - - - +
40B ALA* 3.3 38.1 - - + +
41B LEU* 3.8 16.0 - - + +
44B ALA* 3.5 15.9 - - + -
94B GLU* 3.0 32.7 + - - +
95B TYR 3.9 3.6 - - - +
97B LYS* 1.3 93.9 - - + +
99B GLU* 1.3 64.0 + - - +
101B THR* 3.5 14.1 + - + +
102B TRP* 3.1 22.7 + - - +
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Residues in contact with GLU 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41B LEU* 3.6 23.3 - - + -
95B TYR* 2.8 20.9 + - + +
96B LEU* 3.3 9.2 - - - +
97B LYS 3.2 0.4 - - - -
98B LEU* 1.3 77.3 - - - +
100B THR* 1.3 60.1 + - - +
102B TRP* 3.1 8.2 + - + +
103B MET* 2.8 29.1 + - - +
139B VAL* 6.2 0.7 - - + -
258D ARG 4.0 0.9 - - - +
259D ASN* 3.0 27.1 - - - +
260D PRO* 3.0 15.9 - - + +
261D SER* 2.6 51.5 + - - -
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Residues in contact with THR 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A HIS* 6.3 1.8 - - + +
96B LEU 3.3 10.5 + - - -
97B LYS* 3.7 9.9 - - - -
99B GLU* 1.3 76.4 - - - +
101B THR* 1.3 65.9 + - - +
103B MET* 3.2 3.3 + - - +
104B THR* 3.0 33.1 + - - +
258D ARG* 3.2 57.2 + - + +
259D ASN* 3.5 10.2 + - - -
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Residues in contact with THR 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9A GLU* 6.1 0.7 - - - +
13A LEU* 3.7 25.0 - - + +
36B GLN* 5.5 1.1 - - - +
37B THR* 3.7 20.6 - - + +
97B LYS* 3.3 15.0 + - - +
98B LEU* 3.8 16.9 - - + +
99B GLU 3.3 0.2 - - - -
100B THR* 1.3 78.8 - - - +
102B TRP* 1.3 62.1 + - - +
104B THR* 3.5 8.5 + - - -
105B ALA* 3.1 17.2 + - - +
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Residues in contact with TRP 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B LEU* 4.0 3.1 - - + +
37B THR* 3.5 24.9 - - - +
38B THR* 3.1 38.4 + - - +
41B LEU* 3.7 21.8 - - + -
98B LEU 3.1 18.5 + - - +
99B GLU* 3.4 10.1 - - + +
100B THR 3.1 0.2 - - - -
101B THR* 1.3 75.9 - - - +
103B MET* 1.3 91.0 + - + +
105B ALA* 3.0 5.4 + - - +
106B VAL* 2.9 43.3 + - + +
135B VAL* 3.3 25.8 - - + +
136B LYS* 4.1 20.0 - - + -
139B VAL* 3.6 32.8 - - + -
260D PRO* 4.8 7.4 - - + -
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Residues in contact with MET 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B GLU 2.8 18.5 + - - +
100B THR* 3.2 6.3 + - - +
102B TRP* 1.3 102.1 - - + +
104B THR* 1.3 54.4 + - - +
106B VAL* 3.1 12.8 + - + +
107B GLY* 2.9 27.7 + - - -
256D LEU* 3.8 37.7 - - + +
257D PRO* 3.4 36.8 - - + +
258D ARG* 4.0 6.5 - - - +
260D PRO* 3.6 23.6 - - + -
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Residues in contact with THR 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13A LEU* 3.8 16.4 - - + -
16A GLU* 4.1 18.2 - - + +
100B THR* 3.0 22.1 + - - +
101B THR* 3.5 11.2 - - - -
102B TRP 3.2 0.2 - - - -
103B MET* 1.3 75.5 - - - +
105B ALA* 1.3 63.8 + - - +
107B GLY* 3.4 1.5 + - - -
108B LEU* 3.1 38.2 + - + +
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Residues in contact with ALA 105 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A LEU* 3.9 17.0 - - + -
15A SER* 6.2 0.2 - - - -
30B THR* 4.7 2.6 - - - +
33B ASP* 3.9 13.2 - - + +
34B LEU* 4.0 11.2 - - + -
37B THR* 3.5 21.5 - - - +
101B THR 3.1 8.0 + - - +
102B TRP 3.0 9.9 + - - +
104B THR* 1.3 82.5 - - - +
106B VAL* 1.3 51.7 + - - +
108B LEU* 4.0 5.2 - - - +
109B SER* 2.5 38.2 + - - -
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Residues in contact with VAL 106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34B LEU* 3.6 20.9 - - + -
102B TRP* 2.9 48.0 + - + +
103B MET* 3.1 18.8 + - + +
105B ALA* 1.3 74.3 - - - +
107B GLY* 1.3 66.9 + - - +
109B SER* 3.2 4.4 + - - -
110B GLU* 2.9 47.6 + - + +
132B ILE* 4.4 13.0 - - + +
135B VAL* 5.0 1.1 - - + -
136B LYS* 4.5 13.9 - - + -
256D LEU* 5.1 4.3 - - + -
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Residues in contact with GLY 107 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B MET 2.9 12.9 + - - -
104B THR* 3.9 1.8 - - - -
106B VAL* 1.3 76.7 - - - +
108B LEU* 1.3 61.0 + - - +
110B GLU* 3.2 7.6 + - - +
111B MET* 3.0 30.5 + - - +
256D LEU* 3.6 25.3 - - - +
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Residues in contact with LEU 108 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A LEU* 4.7 3.8 - - + -
15A SER* 3.9 10.8 - - - -
16A GLU* 3.8 33.0 - - + +
19A MET* 3.6 37.6 - - + +
119A THR* 5.2 2.2 - - + -
30B THR* 3.7 15.0 - - + +
104B THR* 3.1 36.8 + - + +
105B ALA* 4.0 3.1 - - - +
107B GLY* 1.3 76.2 - - - +
109B SER* 1.3 57.7 + - - +
111B MET* 3.2 21.7 + - + +
112B ALA* 3.0 28.6 + - - +
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Residues in contact with SER 109 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30B THR* 3.4 34.2 + - - -
31B SER* 6.1 0.4 - - - -
34B LEU* 3.6 12.4 - - - +
105B ALA 2.5 23.3 + - - -
106B VAL 3.2 5.1 + - - -
108B LEU* 1.3 76.9 - - - +
110B GLU* 1.3 58.2 + - - +
112B ALA* 3.4 2.8 + - - +
113B ALA* 3.0 28.2 + - - +
128B ALA* 4.8 4.2 - - - +
132B ILE* 3.6 23.3 - - - +
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Residues in contact with GLU 110 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B VAL* 2.9 24.0 + - - +
107B GLY* 3.5 7.2 - - - +
109B SER* 1.3 74.6 - - - +
111B MET* 1.3 58.9 + - - +
113B ALA* 3.4 4.0 + - - +
114B GLU* 2.9 30.7 + - - +
132B ILE* 3.6 24.9 - - + +
136B LYS* 3.4 24.0 + - - -
256D LEU* 4.0 26.3 - - - +
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Residues in contact with MET 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A MET* 3.8 19.5 - - + +
115A ALA* 5.0 5.6 - - - +
118A GLN* 3.7 50.3 - - + +
119A THR* 4.3 16.6 - - + -
107B GLY* 3.0 18.3 + - - +
108B LEU* 3.2 31.4 + - + +
110B GLU* 1.3 76.9 - - - +
112B ALA* 1.3 58.0 + - - +
114B GLU* 3.4 5.5 + - - +
115B ALA* 2.9 31.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A MET* 4.3 1.3 - - - +
23B VAL* 4.4 2.1 - - - +
26B VAL* 3.8 20.9 - - + -
27B THR* 3.8 21.0 - - + +
30B THR* 3.8 17.3 - - - +
108B LEU 3.0 15.3 + - - +
109B SER 3.6 5.4 - - - +
111B MET* 1.3 74.4 - - - +
113B ALA* 1.3 61.3 + - - +
115B ALA* 3.4 5.6 + - - +
116B ALA* 2.9 30.3 + - - +
128B ALA* 6.0 1.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B SER 3.0 17.7 + - - +
110B GLU* 3.7 8.5 - - - +
111B MET 3.3 0.2 - - - -
112B ALA* 1.3 78.5 - - - +
114B GLU* 1.3 57.2 + - - +
116B ALA* 3.4 5.1 + - - +
117B TYR* 3.0 22.0 + - - +
125B SER* 3.2 23.3 + - - +
128B ALA* 3.9 24.0 - - + +
129B ARG* 4.5 6.1 - - + +
132B ILE* 4.5 6.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B GLU 2.9 17.3 + - - +
111B MET* 3.8 6.3 - - - +
113B ALA* 1.3 77.3 - - - +
115B ALA* 1.3 57.0 + - - +
117B TYR* 3.3 27.1 + - - +
118B GLN* 2.9 39.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A MET* 5.3 6.1 - - - -
19B MET* 5.8 2.2 - - - -
23B VAL* 4.0 18.6 - - + -
111B MET 2.9 18.6 + - - +
112B ALA* 3.8 6.1 - - - +
114B GLU* 1.3 74.0 - - - +
116B ALA* 1.3 62.0 - - - +
118B GLN* 3.3 7.8 + - - +
119B THR* 3.0 34.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23B VAL* 3.4 21.9 - - + +
27B THR* 4.3 9.6 - - + -
112B ALA 2.9 17.5 + - - +
113B ALA 3.7 4.7 - - - +
114B GLU 3.3 0.2 - - - -
115B ALA* 1.3 73.6 - - - +
117B TYR* 1.3 63.4 + - - +
119B THR* 3.4 2.5 + - - -
120B GLY 3.3 2.6 + - - -
121B ALA* 2.7 51.9 + - + +
124B ALA* 4.5 2.5 - - + -
125B SER* 4.1 10.5 - - - +
----------------------------------------------------------
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Residues in contact with TYR 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113B ALA 3.0 8.1 + - - +
114B GLU* 3.3 30.5 - - - +
116B ALA* 1.3 77.7 - - - +
118B GLN* 1.3 68.2 + - - +
120B GLY* 2.9 22.2 + - - -
121B ALA 4.7 1.3 - - - +
122B ASP* 3.8 22.5 - - - +
125B SER* 3.4 22.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A MET* 3.9 35.1 - - + +
114B GLU* 2.9 34.2 + - + +
115B ALA* 3.6 9.9 - - - +
117B TYR* 1.3 85.7 - - - +
119B THR* 1.3 59.3 + - - +
120B GLY 3.2 1.3 + - - -
----------------------------------------------------------
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Residues in contact with THR 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 5.2 2.0 - - + -
111A MET* 4.0 14.6 - - + -
19B MET* 3.7 32.3 - - + -
20B ARG* 4.1 28.1 + - + +
23B VAL* 4.0 12.8 - - + +
115B ALA 3.0 19.9 + - - +
116B ALA* 3.4 11.4 + - - -
117B TYR 3.1 0.4 + - - -
118B GLN* 1.3 78.3 - - - +
120B GLY* 1.3 60.0 + - - +
121B ALA* 3.6 4.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il