Contacts of the helix formed by residues 330 - 401 (chain B) in PDB entry 1GK4
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 330 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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329A GLU* 2.8 31.0 - - + +
330A VAL* 5.3 13.7 - - + -
333A LEU* 3.7 19.0 - - + +
328B CYS 4.7 4.9 - - - +
329B GLU* 1.3 82.7 - - - +
331B ASP* 1.3 75.8 + - - +
332B ALA 3.2 1.1 - - - -
333B LEU* 3.9 2.2 - - - +
334B LYS* 3.1 30.1 + - + +
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Residues in contact with ASP 331 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328B CYS* 3.5 35.4 + - + -
329B GLU 3.6 0.2 - - - +
330B VAL* 1.3 93.8 - - - +
332B ALA* 1.3 57.7 + - - +
334B LYS* 4.2 4.2 - - - +
335B GLY* 3.1 23.6 + - - -
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Residues in contact with ALA 332 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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328B CYS* 4.5 5.1 - - + +
329B GLU* 3.9 22.3 - - - +
330B VAL 3.2 0.6 - - - +
331B ASP* 1.3 79.2 - - - +
333B LEU* 1.3 61.2 + - + +
335B GLY* 3.4 0.9 + - - -
336B THR* 2.9 33.5 + - - +
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Residues in contact with LEU 333 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330A VAL* 3.8 15.5 - - + +
333A LEU* 3.5 37.7 - - + +
334A LYS* 4.0 18.6 - - + +
337A ASN* 4.4 27.8 - - + +
329B GLU* 3.4 29.4 + - - +
330B VAL 3.9 0.2 + - - -
331B ASP 3.4 0.2 - - - -
332B ALA* 1.3 78.6 - - + +
334B LYS* 1.3 60.0 + - - +
335B GLY 2.9 1.6 - - - -
336B THR* 4.4 4.3 - - - +
337B ASN* 2.8 38.1 + - - +
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Residues in contact with LYS 334 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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329A GLU* 5.4 3.6 - - + +
333A LEU* 3.6 32.3 - - + +
330B VAL* 3.1 26.0 + - + +
331B ASP* 4.2 6.1 - - - +
333B LEU* 1.3 78.4 - - - +
335B GLY* 1.3 60.7 + - - +
337B ASN* 4.7 3.1 - - - -
338B GLU* 3.2 51.5 + - - +
405E GLU* 5.7 9.6 + - + +
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Residues in contact with GLY 335 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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331B ASP 3.1 17.6 + - - -
332B ALA* 3.7 1.6 - - - -
333B LEU 2.9 1.0 - - - -
334B LYS* 1.3 77.2 - - - +
336B THR* 1.3 65.3 + - - +
338B GLU* 3.9 2.8 - - - +
339B SER* 3.1 21.9 + - - -
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Residues in contact with THR 336 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337A ASN* 3.8 19.3 - - - +
341A GLU* 5.7 1.3 - - + +
332B ALA 2.9 19.6 + - - -
333B LEU* 4.0 5.6 - - - -
335B GLY* 1.3 73.1 - - - +
337B ASN* 1.3 64.7 + - - +
339B SER* 2.9 17.8 + - - -
340B LEU* 3.0 26.6 + - + +
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Residues in contact with ASN 337 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333A LEU* 3.1 34.1 + - - +
336A THR* 3.2 25.9 - - + +
337A ASN* 2.8 38.0 - - - +
340A LEU* 3.3 14.3 - - + +
333B LEU* 2.8 24.9 + - - +
334B LYS* 4.4 5.2 - - - +
336B THR* 1.3 74.0 - - - +
338B GLU* 1.3 63.8 + - - +
340B LEU* 3.3 2.1 + - - +
341B GLU* 2.9 32.3 + - - +
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Residues in contact with GLU 338 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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334B LYS* 3.2 41.2 + - - +
335B GLY* 4.0 3.1 - - - +
337B ASN* 1.3 84.4 - - - +
339B SER* 1.3 63.0 + - - +
341B GLU* 2.8 28.3 - - - +
342B ARG* 3.5 29.2 + - - +
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Residues in contact with SER 339 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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335B GLY 3.1 14.1 + - - -
336B THR* 2.9 14.3 + - - -
338B GLU* 1.3 75.6 - - - +
340B LEU* 1.3 68.2 + - - +
342B ARG* 3.1 10.1 + - - +
343B GLN* 3.0 37.5 + - - +
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Residues in contact with LEU 340 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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337A ASN* 4.1 14.4 - - - +
340A LEU* 3.9 28.0 - - + +
341A GLU* 4.0 25.1 - - + +
344A MET* 3.9 31.4 - - + -
336B THR* 3.0 23.9 + - + +
337B ASN* 3.8 5.2 - - - +
339B SER* 1.3 78.7 + - - +
341B GLU* 1.3 55.9 + - - +
343B GLN* 2.8 36.7 + - - +
344B MET* 2.9 19.2 + - - +
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Residues in contact with GLU 341 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A THR* 6.0 0.2 - - - -
340A LEU* 3.9 15.2 - - + +
337B ASN* 2.9 16.8 + - - +
338B GLU* 2.8 38.9 - - + +
340B LEU* 1.3 76.7 - - - +
342B ARG* 1.3 57.5 + - - +
344B MET* 4.3 6.9 - - - +
345B ARG* 3.7 16.1 + - - +
401E ARG* 2.6 36.4 + - - -
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Residues in contact with ARG 342 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338B GLU* 3.5 19.0 + - - +
339B SER* 3.1 7.8 + - - +
340B LEU 3.0 0.6 - - - -
341B GLU* 1.3 76.6 - - - +
343B GLN* 1.3 62.4 + - - +
344B MET 3.2 1.6 - - - -
345B ARG* 3.1 21.0 + - - +
346B GLU* 2.8 28.4 + - - +
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Residues in contact with GLN 343 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344A MET* 3.9 20.5 - - + +
339B SER* 3.0 30.0 + - - +
340B LEU* 2.8 18.4 + - - +
342B ARG* 1.3 77.6 - - - +
344B MET* 1.3 56.9 + - - +
346B GLU* 2.8 28.2 - - + +
347B MET* 2.9 16.8 + - + +
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Residues in contact with MET 344 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340A LEU* 3.8 20.0 - - + +
343A GLN* 3.8 28.0 - - + +
344A MET* 3.3 46.4 - - + -
347A MET* 3.3 35.6 - - + +
340B LEU 2.9 12.6 + - - +
341B GLU* 4.4 5.6 - - - +
343B GLN* 1.3 73.5 - - - +
345B ARG* 1.3 66.6 + - - +
346B GLU 2.9 1.6 - - - -
347B MET* 3.2 2.2 + - - +
348B GLU* 2.9 38.2 + - - +
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Residues in contact with ARG 345 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341B GLU 3.7 14.0 + - - +
342B ARG* 3.1 24.0 + - - +
344B MET* 1.3 77.9 - - - +
346B GLU* 1.3 64.8 + - - +
348B GLU* 3.8 11.3 - - - +
349B GLU* 3.2 21.5 + - + +
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Residues in contact with GLU 346 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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342B ARG* 2.8 14.1 + - + +
343B GLN* 2.8 18.4 - - + +
344B MET 2.9 0.4 - - - -
345B ARG* 1.3 74.3 - - - +
347B MET* 1.3 69.8 + - + +
349B GLU* 3.0 7.1 + - - +
350B ASN* 2.9 47.6 + - - +
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Residues in contact with MET 347 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A MET* 4.1 24.7 - - - +
347A MET* 3.5 20.9 - - + +
348A GLU* 3.7 35.2 - - + +
351A PHE* 3.7 22.4 - - + -
343B GLN* 2.9 21.4 + - + +
344B MET 3.7 1.1 - - - +
346B GLU* 1.3 75.8 - - + +
348B GLU* 1.3 65.7 + - - +
350B ASN* 2.9 7.1 + - - -
351B PHE* 2.8 27.2 + - - +
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Residues in contact with GLU 348 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347A MET* 3.3 29.0 - - + +
351A PHE* 4.0 13.5 - - + -
344B MET* 2.9 28.5 + - - +
345B ARG* 3.8 9.0 - - - +
347B MET* 1.3 73.3 - - - +
349B GLU* 1.3 63.4 + - - +
351B PHE* 4.2 1.4 - - - +
352B ALA* 3.1 22.7 + - - +
390E LYS* 5.3 8.6 + - - -
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Residues in contact with GLU 349 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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345B ARG* 3.2 11.3 + - + +
346B GLU* 3.0 9.5 + - - +
348B GLU* 1.3 78.9 - - - +
350B ASN* 1.3 73.7 + - - +
352B ALA* 3.4 17.5 - - - +
353B VAL* 3.5 18.4 + - - +
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Residues in contact with ASN 350 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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346B GLU* 2.9 46.9 + - - +
347B MET* 2.9 9.0 + - - +
349B GLU* 1.3 84.5 - - - +
351B PHE* 1.3 66.3 + - - +
353B VAL* 3.2 9.2 + - - +
354B GLU* 3.1 22.7 + - - +
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Residues in contact with PHE 351 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351A PHE* 3.5 66.6 - + + -
354A GLU* 3.7 31.0 - - + -
355A ALA* 4.2 13.7 - - + -
358A TYR* 4.2 7.2 - + - -
347B MET 2.8 17.4 + - - +
348B GLU 4.2 0.2 - - - +
350B ASN* 1.3 72.2 - - - +
352B ALA* 1.3 57.2 + - - +
354B GLU* 2.9 22.7 + - + -
355B ALA* 2.7 56.1 + - + +
358B TYR* 5.1 0.7 - + - -
382F GLU* 5.6 4.3 - - - -
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Residues in contact with ALA 352 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348B GLU 3.1 18.2 + - - +
349B GLU* 3.4 12.3 - - - +
350B ASN 3.1 0.2 - - - -
351B PHE* 1.3 79.4 - - - +
353B VAL* 1.3 58.7 + - + +
355B ALA* 4.1 4.4 - - - +
356B ALA* 3.0 28.6 + - - +
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Residues in contact with VAL 353 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349B GLU* 3.5 17.4 + - - +
350B ASN* 3.2 9.8 + - - +
352B ALA* 1.3 77.0 - - + +
354B GLU* 1.3 64.6 + - + +
356B ALA* 3.1 8.3 - - + +
357B ASN* 2.9 45.3 + - - +
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Residues in contact with GLU 354 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355A ALA* 4.4 8.1 - - - +
359A GLN* 5.0 0.3 - - - +
350B ASN* 3.1 12.9 + - - +
351B PHE* 2.9 26.4 + - + +
353B VAL* 1.3 79.9 - - + +
355B ALA* 1.3 56.3 + - - +
357B ASN* 2.9 10.4 + - - +
358B TYR* 2.8 66.2 + - + -
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Residues in contact with ALA 355 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358A TYR* 3.7 26.2 - - + +
351B PHE* 2.7 37.0 + - + +
352B ALA* 4.1 4.3 - - - +
354B GLU* 1.3 73.8 - - - +
356B ALA* 1.3 62.2 + - - +
358B TYR* 3.0 12.8 + - - +
359B GLN* 2.9 33.5 + - - +
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Residues in contact with ALA 356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352B ALA 3.0 20.3 + - - +
353B VAL* 3.1 14.1 - - + +
355B ALA* 1.3 78.2 - - - +
357B ASN* 1.3 61.1 + - - +
359B GLN* 3.6 14.2 + - - +
360B ASP* 3.1 29.0 + - - +
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Residues in contact with ASN 357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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353B VAL* 2.9 37.1 + - - +
354B GLU* 2.9 8.6 + - - +
356B ALA* 1.3 76.6 - - - +
358B TYR* 1.3 66.3 + - - +
360B ASP* 3.0 17.9 + - + +
361B THR* 3.0 26.8 + - - +
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Residues in contact with TYR 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355A ALA* 4.5 8.8 + - + +
358A TYR* 3.6 33.7 - + + -
359A GLN* 2.9 43.2 + - + +
362A ILE* 3.6 24.4 - - + +
351B PHE* 5.1 1.1 - + - -
354B GLU* 2.8 61.3 + - + -
355B ALA* 3.3 12.3 - - - +
357B ASN* 1.3 76.4 - - - +
359B GLN* 1.3 57.3 + - - +
361B THR* 3.3 4.9 + - - -
362B ILE* 3.0 34.2 + - - +
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Residues in contact with GLN 359 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358A TYR* 2.7 34.2 + - + -
355B ALA* 2.9 23.5 + - - +
356B ALA* 3.8 12.2 + - - +
358B TYR* 1.3 73.0 - - - +
360B ASP* 1.3 67.5 + - - +
362B ILE* 4.0 8.0 - - + +
363B GLY* 3.1 19.1 + - - -
378F ARG* 3.7 22.4 + - - +
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Residues in contact with ASP 360 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356B ALA* 3.1 18.3 + - - +
357B ASN* 3.0 22.4 + - - +
359B GLN* 1.3 75.8 - - - +
361B THR* 1.3 66.5 + - - +
363B GLY* 3.4 1.9 + - - -
364B ARG* 3.0 23.3 + - - +
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Residues in contact with THR 361 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362A ILE* 3.6 26.4 - - + +
366A GLN* 5.5 1.3 - - - +
357B ASN* 3.0 13.1 + - - +
358B TYR* 3.5 8.4 - - - -
360B ASP* 1.3 74.4 - - - +
362B ILE* 1.3 67.2 + - - +
364B ARG* 2.9 25.9 + - - +
365B LEU* 2.8 41.9 + - + +
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Residues in contact with ILE 362 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358A TYR* 3.7 37.7 - - + +
361A THR* 3.8 30.7 - - + -
362A ILE* 3.5 18.4 - - + -
365A LEU* 3.9 8.0 - - + +
358B TYR 3.0 17.8 + - - +
359B GLN* 4.0 6.3 - - + +
361B THR* 1.3 79.9 - - - +
363B GLY* 1.3 61.5 + - - +
365B LEU* 3.3 2.6 + - - +
366B GLN* 3.0 53.3 + - - +
374F GLU* 5.7 0.2 - - - +
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Residues in contact with GLY 363 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359B GLN 3.1 16.6 + - - -
360B ASP 3.8 2.2 - - - -
362B ILE* 1.3 76.0 - - - +
364B ARG* 1.3 57.5 + - - +
366B GLN* 3.2 14.8 + - - +
367B ASP* 2.9 38.3 + - - -
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Residues in contact with ARG 364 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366A GLN* 6.0 0.4 + - - -
360B ASP 3.0 13.2 + - - +
361B THR* 2.9 25.4 + - - +
363B GLY* 1.3 75.2 - - - +
365B LEU* 1.3 81.3 + - - +
367B ASP* 3.4 8.3 + - - +
368B GLU* 2.5 68.1 + - + +
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Residues in contact with LEU 365 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A ILE* 4.1 17.7 - - + -
365A LEU* 4.0 25.1 - - + -
366A GLN* 4.1 17.5 - - + +
369A ILE* 4.0 15.8 - - + +
361B THR* 2.8 31.8 + - + +
362B ILE 3.7 4.3 - - - +
364B ARG* 1.3 115.8 - - - +
366B GLN* 1.3 60.3 + - - +
368B GLU* 3.2 11.2 + - - +
369B ILE* 2.9 34.9 + - - +
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Residues in contact with GLN 366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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364A ARG* 6.0 0.2 - - - +
365A LEU* 4.0 17.8 - - + +
362B ILE* 3.0 42.3 + - - +
363B GLY* 3.7 11.8 - - - +
365B LEU* 1.3 72.3 - - - +
367B ASP* 1.3 67.6 + - - +
369B ILE* 3.2 10.0 + - - +
370B GLN* 2.9 23.7 + - - +
371F ASN* 3.3 46.3 + - - +
374F GLU* 4.9 6.5 + - - -
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Residues in contact with ASP 367 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B GLY 2.9 22.6 + - - +
364B ARG* 3.6 7.6 - - - +
366B GLN* 1.3 80.0 - - - +
368B GLU* 1.3 56.3 + - + +
370B GLN* 3.4 5.7 + - - +
371B ASN* 2.9 40.3 + - - +
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Residues in contact with GLU 368 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A ILE* 3.6 23.1 - - + +
364B ARG* 2.5 55.2 + - + +
365B LEU* 3.5 11.1 - - - +
366B GLN 3.2 0.2 - - - -
367B ASP* 1.3 74.8 - - + +
369B ILE* 1.3 66.1 + - - +
371B ASN* 3.3 8.9 + - - +
372B MET* 2.9 33.2 + - - +
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Residues in contact with ILE 369 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365A LEU* 3.6 48.0 - - + +
368A GLU* 3.8 20.9 - - + +
369A ILE* 3.5 17.9 - - + -
372A MET* 3.6 21.9 - - - +
365B LEU 2.9 18.8 + - - +
366B GLN* 3.2 8.5 + - - +
368B GLU* 1.3 75.3 - - - +
370B GLN* 1.3 59.0 + - - +
372B MET* 3.3 5.6 + - - -
373B LYS* 2.9 44.5 + - + +
367F ASP* 5.5 2.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN 370 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366B GLN 2.9 16.7 + - - +
367B ASP* 3.7 8.1 - - - +
369B ILE* 1.3 78.3 - - - +
371B ASN* 1.3 67.5 + - - +
373B LYS* 3.0 16.2 + - - +
374B GLU* 2.9 51.2 + - - +
364F ARG* 3.9 38.7 - - - +
367F ASP* 4.2 17.0 - - - +
----------------------------------------------------------
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Residues in contact with ASN 371 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367B ASP* 2.9 26.1 + - - +
368B GLU* 3.7 7.5 - - - +
370B GLN* 1.3 81.9 - - - +
372B MET* 1.3 63.8 + - + +
374B GLU* 3.3 16.6 + - - +
375B GLU* 3.0 23.4 + - - +
----------------------------------------------------------
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Residues in contact with MET 372 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A ILE* 3.4 38.4 - - - +
372A MET* 3.3 37.7 - - + -
373A LYS* 3.8 12.6 - - + +
376A MET* 3.0 33.8 - - + +
368B GLU* 2.9 23.9 + - + +
369B ILE* 3.6 0.4 - - - +
371B ASN* 1.3 74.3 - - + +
373B LYS* 1.3 55.6 + - - +
375B GLU* 3.1 12.8 + - - +
376B MET* 2.7 40.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 373 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368A GLU* 5.7 3.0 + - - -
372A MET* 3.7 17.2 - - + +
369B ILE* 2.9 32.8 + - + +
370B GLN* 3.4 21.5 - - - +
372B MET* 1.3 75.6 - - - +
374B GLU* 1.3 57.7 + - - +
376B MET* 3.3 9.1 + - - +
377B ALA* 2.8 28.9 + - - +
363F GLY* 4.9 7.2 + - - -
364F ARG* 6.2 0.2 - - - -
367F ASP* 2.9 36.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 374 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B GLN* 2.9 45.6 + - - +
371B ASN* 3.5 19.0 + - - +
372B MET 3.2 0.2 - - - -
373B LYS* 1.3 76.7 - - - +
375B GLU* 1.3 64.7 + - - +
377B ALA* 2.9 10.4 + - - +
378B ARG* 2.9 22.6 + - - +
364F ARG* 5.4 2.1 - - - -
----------------------------------------------------------
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Residues in contact with GLU 375 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A MET* 4.7 13.2 - - - +
371B ASN 3.0 13.5 + - - +
372B MET* 3.5 15.3 - - - +
374B GLU* 1.3 75.1 - - - +
376B MET* 1.3 62.8 + - - +
378B ARG* 3.2 35.9 + - - +
379B HIS* 3.0 43.3 + - + -
----------------------------------------------------------
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Residues in contact with MET 376 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372A MET* 3.9 33.0 - - - -
375A GLU* 3.0 34.8 - - + +
376A MET* 3.5 33.9 - - + -
379A HIS* 3.9 19.5 - - + +
372B MET 2.7 22.5 + - - +
373B LYS* 3.5 8.7 - - - +
375B GLU* 1.3 73.1 - - - +
377B ALA* 1.3 63.3 + - - +
379B HIS* 3.2 11.4 + - - +
380B LEU* 2.9 23.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 377 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373B LYS 2.8 14.6 + - - +
374B GLU* 3.1 13.9 - - - +
376B MET* 1.3 75.7 - - - +
378B ARG* 1.3 63.1 + - - +
380B LEU* 3.1 18.0 + - - +
381B ARG* 3.1 41.7 + - - +
360F ASP* 3.5 19.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 378 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374B GLU 2.9 11.1 + - - +
375B GLU* 3.2 34.8 + - - +
377B ALA* 1.3 76.5 - - - +
379B HIS* 1.3 92.6 + - - +
381B ARG* 3.0 22.4 + - + +
382B GLU* 3.1 32.6 + - + +
----------------------------------------------------------
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Residues in contact with HIS 379 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A MET* 5.2 10.9 + - + +
379A HIS* 5.9 7.8 - - + +
375B GLU* 3.0 44.8 + - + +
376B MET* 3.5 11.5 - - - +
378B ARG* 1.3 99.3 + - - +
380B LEU* 1.3 57.4 - - - +
382B GLU* 3.4 18.0 + - - +
383B TYR* 2.9 27.2 + - - +
1407B ACT 3.4 31.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 380 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A HIS* 5.7 10.1 - - + +
376B MET 2.9 13.7 + - - +
377B ALA* 3.1 11.9 + - - +
379B HIS* 1.3 73.4 - - - +
381B ARG* 1.3 62.5 + - - +
383B TYR* 3.4 18.3 + - + +
384B GLN* 2.9 46.2 + - - +
356F ALA* 5.7 9.6 - - + -
----------------------------------------------------------
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Residues in contact with ARG 381 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377B ALA* 3.1 37.8 + - - +
378B ARG* 3.0 14.0 + - + +
380B LEU* 1.3 75.4 - - - +
382B GLU* 1.3 59.0 + - + +
384B GLN* 2.7 27.9 + - - +
385B ASP* 3.0 19.9 + - - +
353F VAL* 5.0 18.2 + - + +
356F ALA* 3.2 18.7 - - + +
357F ASN* 3.0 45.8 + - - +
360F ASP* 2.5 30.6 + - - -
----------------------------------------------------------
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Residues in contact with GLU 382 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A TYR* 3.8 9.8 + - + +
378B ARG* 3.1 32.7 + - + +
379B HIS* 3.4 16.5 - - - +
381B ARG* 1.3 79.2 - - + +
383B TYR* 1.3 63.4 + - - +
385B ASP* 3.4 12.9 + - - +
386B LEU* 3.1 22.5 + - - +
1407B ACT 2.8 39.4 - - + +
----------------------------------------------------------
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Residues in contact with TYR 383 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A HIS 5.2 1.6 - - - -
382A GLU* 4.0 30.0 + - + +
383A TYR* 3.8 33.8 - + + -
386A LEU* 3.8 27.5 - - + +
379B HIS 2.9 17.7 + - - +
380B LEU* 3.5 20.9 - - + +
381B ARG 3.1 0.2 - - - -
382B GLU* 1.3 76.7 - - - +
384B GLN* 1.3 77.3 + - - +
386B LEU* 3.4 2.1 + - - +
387B LEU* 2.8 42.4 + - + +
----------------------------------------------------------
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Residues in contact with GLN 384 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380B LEU* 2.9 37.9 + - - +
381B ARG* 2.7 21.9 + - + +
383B TYR* 1.3 82.7 - - - +
385B ASP* 1.3 62.6 + - - +
387B LEU* 3.2 19.9 + - - +
388B ASN* 2.9 38.2 + - - +
352F ALA* 5.2 15.0 - - + +
353F VAL* 6.0 7.4 - - + +
----------------------------------------------------------
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Residues in contact with ASP 385 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381B ARG* 3.0 25.3 + - - +
382B GLU* 3.6 14.6 - - - +
384B GLN* 1.3 74.3 - - - +
386B LEU* 1.3 65.2 + - - +
388B ASN* 3.0 24.7 + - - +
389B VAL* 3.0 20.1 + - + +
353F VAL* 5.9 2.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A TYR* 3.4 40.2 - - + +
386A LEU* 3.7 13.2 - - + -
387A LEU* 3.6 48.2 - - + +
390A LYS* 3.9 22.9 - - + -
382B GLU 3.1 10.7 + - - +
383B TYR 3.6 7.0 - - - +
385B ASP* 1.3 78.8 - - - +
387B LEU* 1.3 64.0 + - - +
389B VAL* 3.1 11.1 + - + +
390B LYS* 2.9 21.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 387 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A LEU* 3.6 29.3 - - + +
383B TYR* 2.8 36.2 + - + +
384B GLN* 3.2 22.6 + - - +
386B LEU* 1.3 73.3 - - - +
388B ASN* 1.3 63.8 + - - +
390B LYS* 3.4 8.1 + - + +
391B MET* 2.9 57.8 + - + +
----------------------------------------------------------
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Residues in contact with ASN 388 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384B GLN* 2.9 34.1 + - - +
385B ASP* 3.0 13.7 + - - +
387B LEU* 1.3 80.7 - - - +
389B VAL* 1.3 64.5 + - + +
391B MET* 3.2 10.8 + - - +
392B ALA* 3.0 24.0 + - - +
345F ARG* 5.1 2.4 + - - +
349F GLU* 3.4 55.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 389 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A LYS* 3.9 28.3 - - + -
385B ASP* 3.0 20.4 + - + +
386B LEU* 3.1 12.3 + - + +
388B ASN* 1.3 78.1 - - + +
390B LYS* 1.3 62.9 + - - +
392B ALA* 3.4 8.1 + - + +
393B LEU* 3.0 29.9 + - + +
----------------------------------------------------------
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Residues in contact with LYS 390 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A LEU* 3.9 28.5 - - + -
389A VAL* 3.8 25.4 - - + -
390A LYS* 4.4 13.0 - - + +
393A LEU* 3.8 11.2 - - + +
386B LEU 2.9 15.9 + - - +
387B LEU* 3.7 12.0 - - + +
389B VAL* 1.3 78.4 - - - +
391B MET* 1.3 63.7 + - + +
393B LEU* 3.2 13.5 + - - +
394B ASP* 2.6 55.4 + - - +
----------------------------------------------------------
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Residues in contact with MET 391 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387B LEU* 2.9 50.1 + - + +
388B ASN* 3.6 9.4 - - - +
390B LYS* 1.3 80.2 - - + +
392B ALA* 1.3 66.7 + - - +
394B ASP* 3.2 12.1 + - - +
395B ILE* 3.0 34.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA 392 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ASN 3.0 14.8 + - - +
389B VAL* 3.6 8.5 - - - +
391B MET* 1.3 76.9 - - - +
393B LEU* 1.3 66.2 + - + +
395B ILE* 3.5 12.0 + - - +
396B GLU* 3.0 25.8 + - - +
345F ARG* 3.4 33.7 - - - +
----------------------------------------------------------
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Residues in contact with LEU 393 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A LYS* 4.1 31.6 - - + +
393A LEU* 4.0 17.9 - - + -
394A ASP* 3.4 26.0 - - - +
397A ILE* 4.4 15.0 - - + +
389B VAL* 3.0 23.3 + - + +
390B LYS* 3.3 9.4 - - - +
392B ALA* 1.3 76.9 - - + +
394B ASP* 1.3 66.8 + - - +
396B GLU* 3.2 21.1 + - - +
397B ILE* 2.8 27.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 394 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A LEU* 3.4 21.3 - - - +
390B LYS* 2.6 47.0 + - - +
391B MET* 3.4 14.5 - - - +
393B LEU* 1.3 74.5 - - - +
395B ILE* 1.3 67.7 + - + +
397B ILE* 2.9 18.4 + - - +
398B ALA* 2.9 11.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 395 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391B MET* 3.0 21.0 + - + +
392B ALA* 3.5 11.7 - - - +
394B ASP* 1.3 78.0 - - + +
396B GLU* 1.3 68.1 + - - +
398B ALA* 2.8 22.3 + - - +
399B THR* 3.3 14.2 + - - +
345F ARG* 4.8 16.8 - - - +
----------------------------------------------------------
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Residues in contact with GLU 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A ILE* 3.6 16.6 - - + +
401A ARG* 2.7 36.0 + - - -
392B ALA 3.0 14.7 + - - +
393B LEU* 3.4 20.8 - - - +
395B ILE* 1.3 81.0 - - - +
397B ILE* 1.3 61.3 + - - +
399B THR* 3.3 11.1 - - - -
400B TYR* 3.2 37.1 + - + -
----------------------------------------------------------
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Residues in contact with ILE 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A LEU* 3.8 31.4 - - + +
396A GLU* 4.0 33.0 - - + +
397A ILE* 3.2 34.8 - - + -
400A TYR* 4.5 14.3 - - + -
393B LEU 2.8 13.1 + - - +
394B ASP* 3.2 10.3 - - - +
396B GLU* 1.3 72.2 - - - +
398B ALA* 1.3 69.7 - - - +
399B THR 2.9 2.4 + - - -
400B TYR* 3.0 6.3 + - - +
401B ARG* 3.0 32.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B ASP 2.9 9.0 + - - +
395B ILE* 2.8 17.6 + - - +
397B ILE* 1.3 76.4 - - - +
399B THR* 1.3 63.4 + - - +
401B ARG* 3.3 16.4 + - - +
402B LYS* 3.2 18.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B ILE* 3.3 13.5 + - - +
396B GLU* 3.3 15.1 - - - -
397B ILE 2.9 1.0 + - - -
398B ALA* 1.3 73.9 - - - +
400B TYR* 1.3 61.8 + - + +
401B ARG 2.9 3.8 - - - -
402B LYS* 2.7 38.5 + - + +
403B LEU* 2.8 36.3 + - + -
338F GLU* 6.0 1.8 - - - +
----------------------------------------------------------
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Residues in contact with TYR 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A ILE* 4.1 17.0 - - + -
400A TYR* 4.0 24.9 - - + -
401A ARG* 3.2 51.9 + - + -
404A LEU* 3.6 37.3 - - + +
396B GLU* 3.2 26.5 + - + +
397B ILE* 3.0 8.3 + - - +
399B THR* 1.3 90.1 - - + +
401B ARG* 1.3 59.0 + - - +
402B LYS 3.2 0.4 + - - -
403B LEU* 3.8 13.4 + - + -
404B LEU* 3.7 9.7 - - - +
----------------------------------------------------------
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Residues in contact with ARG 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A GLU* 5.3 5.3 + - - -
400A TYR* 3.3 37.1 + - + +
397B ILE* 3.0 23.8 + - + +
398B ALA* 3.7 13.6 - - - +
399B THR 2.9 1.4 + - - -
400B TYR* 1.3 76.5 - - - +
402B LYS* 1.3 58.3 + - - +
404B LEU* 4.0 7.0 - - + +
405B GLU* 3.5 18.2 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il