Contacts of the helix formed by residues 332 - 404 (chain D) in PDB entry 1GK4
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 332 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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330D VAL* 3.0 1.4 + - - +
331D ASP* 1.3 74.0 - - - +
333D LEU* 1.3 58.1 + - - +
335D GLY* 3.0 18.0 + - - -
336D THR* 3.2 15.9 + - - +
371E ASN* 2.7 39.1 + - - +
372E MET* 4.1 10.1 - - + -
375E GLU* 3.1 31.6 - - + +
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Residues in contact with LEU 333 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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330D VAL* 2.9 16.7 + - + +
332D ALA* 1.3 74.0 - - - +
334D LYS* 1.3 57.4 + - - +
335D GLY 2.9 2.0 - - - -
336D THR* 3.0 6.5 + - - +
337D ASN* 2.7 66.4 + - - +
375E GLU* 3.4 22.3 + - - +
378E ARG* 3.4 24.0 - - - +
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Residues in contact with LYS 334 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330D VAL* 2.5 37.6 + - - +
331D ASP* 4.3 2.7 - - - +
333D LEU* 1.3 73.1 - - - +
335D GLY* 1.3 56.9 + - - +
337D ASN* 3.8 6.4 - - - +
338D GLU* 2.7 55.1 + - - +
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Residues in contact with GLY 335 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331D ASP 3.9 5.5 + - - -
332D ALA 3.0 10.2 + - - -
333D LEU 2.9 1.2 - - - -
334D LYS* 1.3 79.4 - - - +
336D THR* 1.3 63.5 + - - +
338D GLU* 3.1 25.5 - - - +
339D SER* 3.2 11.3 + - - -
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Residues in contact with THR 336 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341C GLU* 5.5 0.2 - - - -
332D ALA 3.2 3.0 + - - +
333D LEU* 3.0 14.8 + - - +
335D GLY* 1.3 71.1 - - - +
337D ASN* 1.3 60.7 + - - +
338D GLU 3.0 4.9 - - - -
339D SER* 3.0 8.1 + - - +
340D LEU* 2.7 42.1 + - - +
375E GLU* 2.9 41.4 + - + +
378E ARG* 3.6 7.2 + - - -
379E HIS* 5.9 0.2 - - - -
376F MET* 3.1 31.0 - - + -
380F LEU* 4.8 11.4 - - + -
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Residues in contact with ASN 337 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340C LEU* 3.1 42.0 + - + +
333D LEU* 2.7 50.4 + - - +
334D LYS* 4.1 6.5 - - - +
336D THR* 1.3 76.0 + - - +
338D GLU* 1.3 51.3 + - - +
340D LEU* 3.9 5.0 - - - +
341D GLU* 2.5 39.2 + - - +
378E ARG* 4.4 2.1 + - - -
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Residues in contact with GLU 338 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334D LYS* 2.7 52.2 + - + +
335D GLY* 3.1 11.5 - - - +
337D ASN* 1.3 75.5 - - - +
339D SER* 1.3 66.1 + - - +
341D GLU* 3.2 18.1 + - - +
342D ARG* 3.2 35.9 + - - +
345D ARG* 5.0 1.0 + - - -
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Residues in contact with SER 339 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335D GLY 3.2 8.3 + - - -
336D THR 3.0 7.9 + - - -
338D GLU* 1.3 79.8 - - - +
340D LEU* 1.3 62.6 + - - +
342D ARG* 3.0 25.1 + - - +
343D GLN* 3.0 28.1 + - - +
380F LEU* 3.6 28.8 - - - +
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Residues in contact with LEU 340 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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340C LEU* 3.4 38.4 - - + -
341C GLU* 3.6 34.8 - - + +
344C MET* 3.9 21.2 - - - +
336D THR* 2.7 27.9 + - - +
337D ASN* 3.9 9.0 - - - +
338D GLU 3.2 0.2 - - - -
339D SER* 1.3 73.4 - - - +
341D GLU* 1.3 49.9 + - - +
343D GLN* 3.0 20.3 + - - +
344D MET* 2.7 38.3 + - - +
378E ARG* 4.6 1.8 - - - +
380F LEU* 4.2 18.8 - - + -
383F TYR* 4.9 5.4 - - + -
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Residues in contact with GLU 341 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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340C LEU* 3.9 22.3 - - - +
337D ASN* 2.5 33.6 + - - +
338D GLU* 3.2 9.4 + - - +
340D LEU* 1.3 75.8 - - - +
342D ARG* 1.3 63.6 + - - +
344D MET* 3.2 13.7 + - - +
345D ARG* 3.0 54.4 + - - +
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Residues in contact with ARG 342 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338D GLU* 3.2 39.4 + - - +
339D SER* 3.0 42.2 + - - +
341D GLU* 1.3 80.9 - - - +
343D GLN* 1.3 62.2 + - + +
345D ARG* 3.2 19.8 + - - +
346D GLU* 3.0 40.9 + - + +
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Residues in contact with GLN 343 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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344C MET* 3.2 27.8 - - + +
339D SER* 3.0 16.4 + - - +
340D LEU* 3.0 22.6 + - - +
342D ARG* 1.3 74.1 - - + +
344D MET* 1.3 58.7 + - - +
346D GLU* 3.2 10.2 + - - +
347D MET* 2.8 31.9 + - - +
380F LEU* 3.1 40.9 + - - +
381F ARG* 4.4 2.0 - - - +
383F TYR* 4.4 2.8 - - - -
384F GLN* 3.4 41.6 + - - +
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Residues in contact with MET 344 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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340C LEU* 3.4 31.6 - - + +
343C GLN* 4.0 22.4 - - + +
344C MET* 3.3 27.4 - - + -
347C MET* 3.3 30.0 - - + +
340D LEU 2.7 15.7 + - - +
341D GLU* 3.2 17.2 + - - +
343D GLN* 1.3 69.9 - - - +
345D ARG* 1.3 71.0 + - + +
347D MET* 3.2 9.3 + - - +
348D GLU* 3.1 31.8 + - - +
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Residues in contact with ARG 345 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338D GLU 5.0 1.2 + - - -
341D GLU* 3.0 47.7 + - - +
342D ARG* 3.2 18.3 + - + +
344D MET* 1.3 77.0 - - + +
346D GLU* 1.3 58.8 + - + +
348D GLU* 3.0 17.8 + - - +
349D GLU* 2.8 45.5 + - + +
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Residues in contact with GLU 346 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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342D ARG* 3.0 36.8 + - + +
343D GLN* 3.4 11.2 + - - +
345D ARG* 1.3 76.2 - - + +
347D MET* 1.3 53.0 + - - +
349D GLU* 3.5 17.1 + - - +
350D ASN* 2.7 49.8 + - - +
384F GLN* 3.8 22.7 + - - +
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Residues in contact with MET 347 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344C MET* 3.5 38.8 - - + +
347C MET* 4.0 13.5 - - + -
348C GLU* 3.7 38.6 - - + +
351C PHE* 4.2 13.2 - - + -
343D GLN 2.8 18.2 + - - +
344D MET* 3.4 9.0 - - - +
345D ARG 3.1 0.4 + - - -
346D GLU* 1.3 76.1 - - - +
348D GLU* 1.3 52.4 + - - +
350D ASN* 3.1 10.1 + - - +
351D PHE* 2.8 35.3 + - - +
384F GLN* 4.6 9.4 - - + +
387F LEU* 4.1 11.7 - - + -
388F ASN* 5.8 4.3 - - - +
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Residues in contact with GLU 348 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347C MET* 3.2 26.9 - - + +
351C PHE* 4.1 15.2 - - + -
344D MET* 3.2 20.3 - - - +
345D ARG* 3.0 16.1 + - - +
347D MET* 1.3 72.1 - - - +
349D GLU* 1.3 66.8 + - + +
351D PHE* 3.5 1.4 + - - +
352D ALA* 3.0 24.4 + - - +
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Residues in contact with GLU 349 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345D ARG* 2.8 30.1 + - + +
346D GLU* 3.5 23.0 + - - +
348D GLU* 1.3 77.6 - - + +
350D ASN* 1.3 61.9 + - - +
352D ALA* 3.3 7.4 + - - +
353D VAL* 2.9 27.5 + - - +
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Residues in contact with ASN 350 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346D GLU* 2.7 40.8 + - - +
347D MET* 3.1 8.8 + - - +
349D GLU* 1.3 74.6 - - - +
351D PHE* 1.3 58.8 + - - +
353D VAL* 2.8 25.0 - - - +
354D GLU* 3.2 12.2 + - - +
384F GLN* 5.5 3.2 - - - +
388F ASN* 5.7 4.0 + - - +
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Residues in contact with PHE 351 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351C PHE* 3.2 50.3 - + + -
354C GLU* 3.6 46.7 - - + -
355C ALA* 4.0 18.2 - - + -
358C TYR* 4.3 6.5 - + - -
347D MET 2.8 18.1 + - - +
348D GLU 4.3 1.6 - - - +
350D ASN* 1.3 72.0 - - - +
352D ALA* 1.3 58.4 + - - +
354D GLU* 3.7 27.1 - - + -
355D ALA* 2.7 50.9 + - + +
358D TYR* 4.6 2.2 - + - -
391F MET* 4.0 11.4 - - + -
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Residues in contact with ALA 352 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348D GLU 3.0 18.6 + - - +
349D GLU* 3.6 8.5 - - - +
350D ASN 3.3 0.4 - - - -
351D PHE* 1.3 76.8 - - - +
353D VAL* 1.3 59.3 + - - +
355D ALA* 3.7 5.0 - - - +
356D ALA* 2.8 30.5 + - - +
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Residues in contact with VAL 353 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349D GLU 2.9 15.0 - - - +
350D ASN* 2.8 27.6 - - - +
352D ALA* 1.3 74.0 - - - +
354D GLU* 1.3 61.6 + - - +
356D ALA* 3.8 6.3 - - - +
357D ASN* 3.1 36.8 + - - +
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Residues in contact with GLU 354 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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342A ARG* 3.0 38.3 + - - -
355C ALA* 3.9 7.4 - - - +
350D ASN 3.2 15.9 + - - +
351D PHE* 3.2 24.5 + - + +
353D VAL* 1.3 79.4 - - - +
355D ALA* 1.3 62.6 + - - +
357D ASN* 3.4 9.1 + - - +
358D TYR* 2.7 60.2 + - + +
391F MET* 4.0 0.9 - - - +
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Residues in contact with ALA 355 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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354C GLU* 5.4 0.7 - - - +
358C TYR* 3.9 14.5 - - + +
351D PHE* 2.7 41.7 + - + +
352D ALA* 3.7 5.4 - - - +
354D GLU* 1.3 71.8 - - - +
356D ALA* 1.3 62.1 + - - +
358D TYR* 3.4 13.8 + - - +
359D GLN* 2.9 35.2 + - - +
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Residues in contact with ALA 356 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352D ALA 2.8 18.3 + - - +
353D VAL* 3.8 8.3 - - - +
354D GLU 3.3 0.2 - - - -
355D ALA* 1.3 76.4 - - - +
357D ASN* 1.3 61.4 + - - +
359D GLN* 3.3 17.8 + - - +
360D ASP* 2.9 35.7 + - - +
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Residues in contact with ASN 357 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353D VAL* 3.1 26.5 + - - +
354D GLU* 3.5 12.2 - - - +
355D ALA 3.3 0.2 - - - -
356D ALA* 1.3 78.0 - - - +
358D TYR* 1.3 65.8 + - + +
360D ASP* 3.4 13.9 + - - +
361D THR* 3.0 26.9 + - - +
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Residues in contact with TYR 358 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338A GLU* 5.4 0.7 + - - -
342A ARG* 4.3 1.6 + - - -
355C ALA* 4.1 9.9 - - + +
358C TYR* 3.1 46.0 - + + -
359C GLN* 3.1 39.5 + - + +
362C ILE* 3.6 24.5 - - + -
351D PHE* 4.6 2.0 - + - -
354D GLU* 2.7 54.4 + - + +
355D ALA* 3.6 7.9 - - - +
356D ALA 3.2 0.6 - - - -
357D ASN* 1.3 78.8 - - + +
359D GLN* 1.3 55.0 + - - +
361D THR* 2.9 5.1 + - - -
362D ILE* 2.6 39.1 + - + +
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Residues in contact with GLN 359 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358C TYR* 3.3 28.8 + - + +
355D ALA* 2.9 17.6 + - - +
356D ALA* 3.4 20.2 - - - +
358D TYR* 1.3 74.8 - - - +
360D ASP* 1.3 58.2 + - - +
362D ILE* 3.7 10.1 - - - +
363D GLY* 2.8 27.2 + - - -
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Residues in contact with ASP 360 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356D ALA* 2.9 20.1 + - - +
357D ASN* 3.4 18.4 + - - +
358D TYR 3.1 0.2 - - - -
359D GLN* 1.3 75.3 - - - +
361D THR* 1.3 56.7 + - - +
363D GLY* 2.6 24.5 + - - -
364D ARG* 2.9 13.7 + - - +
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Residues in contact with THR 361 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362C ILE* 3.8 30.2 - - + +
366C GLN* 5.3 0.7 - - - +
357D ASN* 3.0 10.8 + - - +
358D TYR* 2.9 7.1 + - - -
360D ASP* 1.3 78.9 - - - +
362D ILE* 1.3 65.2 + - - +
363D GLY 3.0 0.2 + - - -
364D ARG* 3.1 45.2 + - - +
365D LEU* 2.9 34.4 + - + +
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Residues in contact with ILE 362 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358C TYR* 3.8 34.5 - - + +
361C THR* 3.6 34.5 - - + +
362C ILE* 3.6 19.1 - - + -
365C LEU* 4.1 6.7 - - + -
358D TYR 2.6 23.6 + - - +
359D GLN* 3.7 8.1 - - - +
361D THR* 1.3 74.3 - - - +
363D GLY* 1.3 59.8 + - - +
365D LEU* 3.8 2.2 - - - +
366D GLN* 2.9 55.3 + - + +
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Residues in contact with GLY 363 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359D GLN 2.8 10.8 + - - -
360D ASP* 2.6 16.0 + - - -
362D ILE* 1.3 70.2 - - - +
364D ARG* 1.3 64.2 + - - -
366D GLN* 3.2 12.5 + - - +
367D ASP* 3.0 31.5 + - - +
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Residues in contact with ARG 364 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366C GLN* 5.2 5.5 + - - -
360D ASP 2.9 13.1 + - - +
361D THR* 3.1 58.9 + - - +
363D GLY* 1.3 72.4 - - - +
365D LEU* 1.3 77.6 + - + +
367D ASP* 3.2 11.3 + - - +
368D GLU* 2.9 34.2 + - - +
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Residues in contact with LEU 365 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362C ILE* 3.8 19.5 - - + +
365C LEU* 3.8 36.3 - - + -
366C GLN* 3.8 16.2 - - + +
369C ILE* 3.8 20.1 - - + +
361D THR* 2.9 34.3 + - + +
362D ILE* 4.8 0.4 - - - -
364D ARG* 1.3 102.4 - - + +
366D GLN* 1.3 57.6 + - - +
368D GLU* 3.2 11.3 + - - +
369D ILE* 2.9 34.1 + - - +
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Residues in contact with GLN 366 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365C LEU* 3.6 19.2 - - + +
362D ILE* 2.9 41.0 + - - +
363D GLY* 3.7 9.9 - - - +
365D LEU* 1.3 75.2 - - - +
367D ASP* 1.3 64.5 + - - +
369D ILE* 3.3 10.3 + - - +
370D GLN* 3.2 21.5 + - - +
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Residues in contact with ASP 367 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363D GLY* 3.0 22.9 + - - +
364D ARG* 3.4 11.0 - - - +
366D GLN* 1.3 79.2 - - - +
368D GLU* 1.3 63.5 + - - +
370D GLN* 3.1 8.1 + - - +
371D ASN* 2.9 32.5 + - - +
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Residues in contact with GLU 368 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369C ILE* 3.6 32.6 - - + +
373C LYS* 4.0 13.2 + - - -
364D ARG* 2.9 17.8 + - - +
365D LEU* 3.4 16.5 - - - +
367D ASP* 1.3 77.5 - - - +
369D ILE* 1.3 61.3 + - - +
371D ASN* 3.4 7.7 + - + +
372D MET* 3.1 39.3 + - + +
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Residues in contact with ILE 369 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365C LEU* 4.0 13.9 - - + +
368C GLU* 3.8 42.4 - - + +
369C ILE* 3.2 32.5 - - + +
372C MET* 4.1 7.5 - - + +
365D LEU 2.9 23.0 + - - +
366D GLN* 3.4 11.4 - - - +
368D GLU* 1.3 76.4 - - - +
370D GLN* 1.3 57.2 + - - +
372D MET* 3.4 7.4 + - + +
373D LYS* 3.0 50.0 + - - +
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Residues in contact with GLN 370 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366D GLN 3.2 7.9 + - - +
367D ASP* 3.1 10.6 + - - +
369D ILE* 1.3 77.9 - - - +
371D ASN* 1.3 68.7 + - - +
373D LYS* 3.1 23.2 + - - +
374D GLU* 3.0 54.3 + - - +
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Residues in contact with ASN 371 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367D ASP* 2.9 21.5 + - - +
368D GLU* 3.7 11.4 - - + +
369D ILE 3.4 0.2 - - - -
370D GLN* 1.3 79.5 - - - +
372D MET* 1.3 59.7 + - + +
374D GLU* 3.3 13.2 + - - +
375D GLU* 3.0 28.7 + - - +
----------------------------------------------------------
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Residues in contact with MET 372 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369C ILE* 3.6 32.8 - - + -
372C MET* 4.1 26.7 - - - -
373C LYS* 4.3 18.4 - - - -
376C MET* 4.3 18.7 - - - +
368D GLU* 3.1 43.2 + - + +
369D ILE* 3.7 8.7 - - + +
371D ASN* 1.3 77.1 - - + +
373D LYS* 1.3 60.4 + - - +
375D GLU* 3.7 10.9 - - - +
376D MET* 2.8 34.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 373 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368C GLU* 4.5 5.3 + - - -
372C MET* 4.2 21.2 - - - +
369D ILE* 3.0 41.0 + - + +
370D GLN* 3.1 28.2 + - - +
372D MET* 1.3 76.8 - - - +
374D GLU* 1.3 61.7 + - - +
376D MET* 3.9 4.0 - - - +
377D ALA* 3.1 23.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 374 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370D GLN* 3.0 48.4 + - - +
371D ASN* 3.5 12.4 - - - +
373D LYS* 1.3 74.9 - - - +
375D GLU* 1.3 65.7 + - - +
377D ALA* 3.0 17.7 + - - +
378D ARG* 3.0 13.9 + - - +
381D ARG* 4.9 0.5 + - - -
----------------------------------------------------------
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Residues in contact with GLU 375 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376C MET* 3.5 14.2 - - + +
371D ASN 3.0 17.4 + - - +
372D MET* 3.3 10.4 + - - +
374D GLU* 1.3 75.9 - - - +
376D MET* 1.3 64.6 + - - +
378D ARG* 3.1 26.4 + - - +
379D HIS* 3.0 52.6 + - + -
----------------------------------------------------------
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Residues in contact with MET 376 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372C MET* 6.1 4.0 - - + -
375C GLU* 3.5 29.8 - - + +
376C MET* 3.4 52.6 - - + +
379C HIS* 4.0 28.5 - - + -
372D MET 2.8 21.2 + - - +
373D LYS* 3.9 5.4 - - - +
375D GLU* 1.3 74.1 - - - +
377D ALA* 1.3 63.5 + - - +
379D HIS* 3.1 5.7 + - - +
380D LEU* 2.9 37.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA 377 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373D LYS 3.1 14.1 + - - +
374D GLU* 3.0 13.5 + - - +
376D MET* 1.3 76.0 - - - +
378D ARG* 1.3 62.9 + - - +
380D LEU* 3.4 11.1 + - - +
381D ARG* 3.1 40.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 378 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374D GLU 3.0 10.6 + - - +
375D GLU* 3.4 27.2 + - - +
377D ALA* 1.3 77.5 - - - +
379D HIS* 1.3 89.1 + - - +
381D ARG* 2.9 41.8 + - - +
382D GLU* 2.9 49.6 + - - +
----------------------------------------------------------
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Residues in contact with HIS 379 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376C MET* 3.4 20.7 + - + +
379C HIS* 3.9 21.4 + + + +
380C LEU* 5.9 10.5 - - + +
383C TYR* 5.0 1.9 - - - -
375D GLU* 3.0 42.7 + - + -
376D MET* 3.5 8.8 - - - +
378D ARG* 1.3 97.8 + - - +
380D LEU* 1.3 51.5 + - - +
382D GLU* 3.0 23.8 + - - +
383D TYR* 2.8 34.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 380 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379C HIS* 3.5 36.8 - - + +
376D MET* 2.9 31.1 + - + +
377D ALA* 3.6 11.2 - - - +
378D ARG 3.2 0.2 - - - -
379D HIS* 1.3 75.6 - - - +
381D ARG* 1.3 61.9 + - - +
383D TYR* 3.2 4.9 + - + +
384D GLN* 3.0 21.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 381 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374D GLU 4.9 0.8 + - - -
377D ALA* 3.1 36.6 + - - +
378D ARG* 2.9 35.2 + - - +
380D LEU* 1.3 75.0 - - - +
382D GLU* 1.3 60.4 + - + +
384D GLN* 2.9 19.6 + - - +
385D ASP* 2.8 36.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 382 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383C TYR* 3.8 23.1 + - + +
378D ARG* 2.9 52.1 + - + +
379D HIS* 3.3 25.2 - - - +
381D ARG* 1.3 78.2 - - + +
383D TYR* 1.3 56.0 + - - +
385D ASP* 3.7 11.7 + - - +
386D LEU* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with TYR 383 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379C HIS* 3.7 25.4 - + + +
382C GLU* 3.8 35.8 + - + +
383C TYR* 3.8 27.8 - + + -
386C LEU* 3.5 33.0 - - + +
379D HIS 2.8 16.5 + - - +
380D LEU* 3.5 8.7 - - + +
381D ARG 3.1 0.4 - - - -
382D GLU* 1.3 74.0 - - - +
384D GLN* 1.3 62.1 + - - +
386D LEU* 3.3 2.3 + - - +
387D LEU* 2.9 43.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 384 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380D LEU 3.0 12.7 + - - +
381D ARG* 2.9 20.9 + - - +
383D TYR* 1.3 82.4 - - - +
385D ASP* 1.3 66.2 + - - +
387D LEU* 3.3 6.6 + - - +
388D ASN* 3.1 38.6 + - - +
----------------------------------------------------------
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Residues in contact with ASP 385 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381D ARG* 2.8 24.1 + - - +
382D GLU* 3.7 12.3 + - - +
384D GLN* 1.3 82.8 - - - +
386D LEU* 1.3 61.8 + - - +
388D ASN* 3.1 13.4 + - - +
389D VAL* 3.1 26.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 386 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383C TYR* 3.7 32.5 - - + +
386C LEU* 3.6 29.2 - - + -
387C LEU* 3.6 27.6 - - + +
390C LYS* 3.9 32.1 - - + -
382D GLU 2.9 16.9 + - - +
383D TYR 3.8 3.8 - - - +
385D ASP* 1.3 77.2 - - - +
387D LEU* 1.3 63.2 + - - +
389D VAL* 3.2 11.3 + - + +
390D LYS* 3.0 21.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 387 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386C LEU* 3.9 27.8 - - + +
383D TYR* 2.9 33.3 + - + +
384D GLN* 3.8 7.2 - - - +
385D ASP 3.2 0.2 - - - -
386D LEU* 1.3 76.5 - - - +
388D ASN* 1.3 63.9 + - - +
390D LYS* 3.3 16.2 + - + +
391D MET* 3.0 22.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 388 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384D GLN* 3.1 35.6 + - - +
385D ASP* 3.1 12.7 + - - +
387D LEU* 1.3 74.5 - - - +
389D VAL* 1.3 66.6 + - + +
391D MET* 3.1 31.6 + - + +
392D ALA* 3.1 12.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 389 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390C LYS* 3.9 29.2 - - + -
385D ASP* 3.1 15.5 + - + +
386D LEU* 3.4 13.9 - - + +
388D ASN* 1.3 77.2 - - + +
390D LYS* 1.3 64.1 + - - +
392D ALA* 3.1 10.0 + - + +
393D LEU* 3.1 30.0 + - + +
----------------------------------------------------------
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Residues in contact with LYS 390 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386C LEU* 3.5 27.6 - - + +
389C VAL* 3.7 26.0 - - + -
390C LYS* 5.1 7.0 - - + +
393C LEU* 3.6 16.4 - - + -
386D LEU 3.0 13.1 + - - +
387D LEU* 3.6 19.6 - - + +
389D VAL* 1.3 76.8 - - - +
391D MET* 1.3 51.6 + - - +
393D LEU* 3.2 12.4 + - - +
394D ASP* 2.7 61.1 + - - +
----------------------------------------------------------
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Residues in contact with MET 391 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387D LEU 3.0 13.5 + - - +
388D ASN* 3.1 26.0 + - - +
390D LYS* 1.3 74.8 - - - +
392D ALA* 1.3 66.1 + - - +
394D ASP* 3.2 8.3 + - + +
395D ILE* 3.1 40.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 392 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388D ASN 3.1 10.1 + - - +
389D VAL* 3.1 12.8 + - + +
391D MET* 1.3 74.7 - - - +
393D LEU* 1.3 66.4 + - + +
395D ILE* 3.2 11.0 + - - +
396D GLU* 2.9 28.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 393 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390C LYS* 4.0 36.1 - - + +
393C LEU* 4.2 14.6 - - + -
394C ASP* 3.4 24.7 - - - +
397C ILE* 3.7 24.5 - - + -
389D VAL* 3.1 19.7 + - + +
390D LYS* 3.5 9.6 - - - +
392D ALA* 1.3 80.0 - - + +
394D ASP* 1.3 56.9 + - - +
396D GLU* 3.3 11.3 + - - +
397D ILE* 2.9 35.4 + - - +
----------------------------------------------------------
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Residues in contact with ASP 394 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393C LEU* 3.8 21.9 - - - +
390D LYS* 2.7 55.1 + - - +
391D MET* 3.2 8.8 + - + +
393D LEU* 1.3 73.8 - - - +
395D ILE* 1.3 63.1 + - + +
397D ILE* 3.6 7.1 + - - +
398D ALA* 3.2 22.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 395 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391D MET* 3.1 32.7 + - + +
392D ALA* 3.7 8.7 - - - +
394D ASP* 1.3 74.4 - - + +
396D GLU* 1.3 67.7 + - - +
398D ALA* 3.3 7.1 + - + +
399D THR* 3.0 34.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 396 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397C ILE* 3.8 23.2 - - + +
392D ALA* 2.9 15.9 + - - +
393D LEU* 3.5 18.5 - - - +
395D ILE* 1.3 78.6 - - - +
397D ILE* 1.3 55.8 + - - +
399D THR* 3.2 10.7 + - + -
400D TYR* 3.0 60.2 + - + -
----------------------------------------------------------
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Residues in contact with ILE 397 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393C LEU* 3.7 37.5 - - + +
396C GLU* 3.5 31.0 - - - +
397C ILE* 3.4 26.9 - - + -
400C TYR* 3.9 10.5 - - + -
393D LEU 2.9 21.9 + - - +
394D ASP* 3.9 7.6 - - - +
395D ILE 3.2 0.2 - - - -
396D GLU* 1.3 73.8 - - - +
398D ALA* 1.3 60.0 + - - +
400D TYR* 3.3 8.0 + - - +
401D ARG* 2.9 39.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 398 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394D ASP 3.2 15.7 + - - +
395D ILE* 3.3 7.2 + - + +
397D ILE* 1.3 80.6 - - - +
399D THR* 1.3 60.7 + - - +
401D ARG* 3.8 9.1 - - - +
402D LYS* 3.1 39.0 + - - +
----------------------------------------------------------
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Residues in contact with THR 399 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395D ILE* 3.0 23.8 + - - +
396D GLU* 3.2 14.2 - - + +
398D ALA* 1.3 74.0 - - - +
400D TYR* 1.3 69.6 + - + +
402D LYS* 3.1 12.4 + - - +
403D LEU* 2.9 31.4 + - + +
----------------------------------------------------------
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Residues in contact with TYR 400 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397C ILE* 3.9 15.1 - - + +
400C TYR* 3.6 37.2 - + + -
401C ARG* 3.7 38.4 - - + +
404C LEU* 4.6 22.2 - - + -
396D GLU* 3.0 56.8 + - + -
397D ILE* 3.3 7.2 + - - +
399D THR* 1.3 78.2 - - + +
401D ARG* 1.3 65.2 + - - +
403D LEU* 3.1 12.1 + - + +
404D LEU* 2.9 31.1 + - + +
----------------------------------------------------------
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Residues in contact with ARG 401 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396C GLU* 4.7 1.8 - - - -
400C TYR* 3.6 32.5 + - + +
397D ILE* 2.9 33.1 + - - +
398D ALA* 3.8 8.3 - - - +
399D THR 3.2 0.2 - - - -
400D TYR* 1.3 74.8 - - - +
402D LYS* 1.3 66.0 + - + +
404D LEU* 3.2 18.2 + - - +
405D GLU* 3.3 13.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 402 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398D ALA* 3.1 26.9 + - - +
399D THR* 3.1 11.7 + - - +
401D ARG* 1.3 76.1 - - + +
403D LEU* 1.3 54.6 + - - +
405D GLU* 2.7 40.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 403 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404C LEU* 3.7 37.7 - - + -
399D THR* 2.9 21.2 + - + +
400D TYR* 3.4 19.3 - - + +
402D LYS* 1.3 76.1 - - - +
404D LEU* 1.3 58.2 + - + +
405D GLU 3.2 2.4 + - - -
406D GLY 4.3 0.2 + - - -
407D GLU* 3.0 31.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU 404 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400C TYR* 3.4 41.3 - - + +
403C LEU* 4.3 25.6 - - + -
404C LEU* 4.9 17.5 - - + -
400D TYR* 2.9 18.9 + - + +
401D ARG* 3.6 9.6 - - - +
402D LYS 3.0 0.4 - - - -
403D LEU* 1.3 76.7 - - + +
405D GLU* 1.3 56.2 + - - +
406D GLY 3.2 9.1 + - - -
407D GLU* 4.3 17.1 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il