Contacts of the helix formed by residues 339 - 404 (chain E) in PDB entry 1GK4
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 339 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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337E ASN 2.9 14.6 + - - +
338E GLU* 1.3 89.6 + - - +
340E LEU* 1.3 65.0 + - - +
341E GLU* 3.6 15.4 + - - +
342E ARG* 2.9 33.6 + - - +
343E GLN* 3.0 9.5 + - - +
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Residues in contact with LEU 340 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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338E GLU 4.6 1.1 - - - +
339E SER* 1.3 74.1 - - - +
341E GLU* 1.3 59.2 + - - +
343E GLN* 3.0 24.7 + - - +
344E MET* 2.8 35.2 + - - +
337F ASN* 2.9 55.7 - - + +
340F LEU* 3.4 29.6 - - + +
341F GLU* 3.6 25.8 - - + +
344F MET* 4.6 8.5 - - - +
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Residues in contact with GLU 341 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339E SER* 3.7 18.6 + - - +
340E LEU* 1.3 79.3 + - - +
342E ARG* 1.3 59.8 + - + +
344E MET* 3.2 12.2 + - - +
345E ARG* 2.9 37.1 + - - +
337F ASN* 5.5 0.7 + - - -
340F LEU* 3.6 32.2 - - + +
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Residues in contact with ARG 342 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337E ASN* 3.3 46.1 + - + +
339E SER* 2.9 25.0 + - - +
341E GLU* 1.3 76.1 - - - +
343E GLN* 1.3 61.8 + - - +
345E ARG* 3.2 47.2 + - - +
346E GLU* 2.9 28.8 + - - +
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Residues in contact with GLN 343 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337E ASN 3.5 15.9 + - - +
338E GLU* 2.6 26.3 + - - +
339E SER 3.0 8.0 + - - +
340E LEU* 3.0 26.5 + - - +
342E ARG* 1.3 76.0 - - - +
344E MET* 1.3 64.0 + - - +
346E GLU* 3.2 12.7 + - - +
347E MET* 3.0 29.7 + - + +
341F GLU* 5.1 0.5 - - - +
344F MET* 3.6 31.1 - - + +
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Residues in contact with MET 344 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340E LEU 2.8 17.5 + - - +
341E GLU* 3.2 15.0 + - - +
343E GLN* 1.3 74.5 - - - +
345E ARG* 1.3 60.1 + - + +
347E MET* 3.2 3.7 + - - -
348E GLU* 2.9 27.3 + - - +
340F LEU* 4.1 20.0 - - - +
343F GLN* 3.2 43.5 - - + +
344F MET* 3.6 24.5 - - + +
347F MET* 3.3 41.8 - - + +
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Residues in contact with ARG 345 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341E GLU* 2.9 21.9 + - - +
342E ARG* 3.2 50.1 - - - +
344E MET* 1.3 76.6 - - + +
346E GLU* 1.3 58.1 + - - +
348E GLU* 3.3 11.1 + - - +
349E GLU* 2.9 51.3 + - - +
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Residues in contact with GLU 346 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337E ASN 4.5 15.4 + - - +
342E ARG 2.9 14.4 + - - +
343E GLN* 3.5 13.4 - - - +
345E ARG* 1.3 77.6 - - - +
347E MET* 1.3 58.3 + - + +
349E GLU* 3.3 10.4 + - - +
350E ASN* 2.9 49.7 + - - +
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Residues in contact with MET 347 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343E GLN* 3.0 18.1 + - + +
344E MET* 3.2 5.4 + - - +
346E GLU* 1.3 77.2 - - + +
348E GLU* 1.3 58.5 + - - +
350E ASN* 3.3 9.1 + - - +
351E PHE 2.9 25.1 + - - -
344F MET* 3.4 55.0 - - + +
347F MET* 3.8 20.0 - - + -
348F GLU* 3.6 26.2 - - + +
351F PHE* 3.4 17.3 - - + -
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Residues in contact with GLU 348 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344E MET 2.9 16.5 + - - +
345E ARG* 3.6 10.8 - - - +
347E MET* 1.3 77.2 - - - +
349E GLU* 1.3 81.9 + - - +
351E PHE* 3.9 1.6 - - - +
352E ALA* 3.0 34.3 + - - +
347F MET* 3.7 9.8 - - + +
351F PHE* 3.8 13.9 - - + -
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Residues in contact with GLU 349 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345E ARG* 2.9 37.4 + - - +
346E GLU* 3.7 8.7 - - - +
347E MET 3.2 0.2 - - - -
348E GLU* 1.3 93.0 - - - +
350E ASN* 1.3 64.7 + - - +
352E ALA* 3.2 14.1 + - - +
353E VAL* 3.3 17.9 + - - +
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Residues in contact with ASN 350 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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346E GLU* 2.9 40.1 + - - +
347E MET* 3.7 7.5 - - - +
349E GLU* 1.3 76.9 - - - +
351E PHE* 1.3 63.4 + - - +
353E VAL* 3.3 23.0 + - - +
354E GLU* 3.4 13.2 + - - +
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Residues in contact with PHE 351 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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347E MET 2.9 7.4 + - - +
348E GLU 3.9 1.8 - - - +
350E ASN* 1.3 74.8 - - - +
352E ALA* 1.3 58.1 + - - +
354E GLU* 2.7 49.1 + - + +
355E ALA* 2.8 33.6 + - + -
358E TYR* 5.2 2.7 - + - -
351F PHE* 3.5 72.0 - + + -
354F GLU* 3.5 36.3 - - + -
355F ALA* 4.4 12.3 - - + -
358F TYR* 4.7 3.4 - + - -
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Residues in contact with ALA 352 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348E GLU* 3.0 29.1 + - - +
349E GLU* 3.2 8.0 + - - +
351E PHE* 1.3 77.0 - - - +
353E VAL* 1.3 62.1 + - + +
355E ALA* 3.9 8.1 - - - +
356E ALA* 3.0 24.8 + - - +
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Residues in contact with VAL 353 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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349E GLU 3.4 15.9 - - - +
350E ASN* 3.4 12.6 - - - +
351E PHE 3.0 0.2 - - - -
352E ALA* 1.3 77.5 - - + +
354E GLU* 1.3 64.1 + - + +
356E ALA* 3.3 6.8 + - - +
357E ASN* 3.0 37.8 + - - +
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Residues in contact with GLU 354 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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350E ASN* 3.7 11.4 - - - +
351E PHE* 2.7 38.0 + - + +
353E VAL* 1.3 73.5 - - + +
355E ALA* 1.3 63.0 + - - +
357E ASN* 3.0 11.9 + - - +
358E TYR* 3.0 40.7 + - + -
351F PHE* 5.7 0.7 - - - -
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Residues in contact with ALA 355 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351E PHE* 2.8 37.4 + - + +
352E ALA* 3.9 6.7 - - - +
354E GLU* 1.3 73.2 - - - +
356E ALA* 1.3 60.8 + - - +
358E TYR* 3.4 5.4 + - - +
359E GLN* 3.1 32.6 + - - +
358F TYR* 3.9 29.7 - - + +
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Residues in contact with ALA 356 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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352E ALA 3.0 19.3 + - - +
353E VAL* 3.5 7.2 - - - +
355E ALA* 1.3 74.1 - - - +
357E ASN* 1.3 67.9 + - - +
359E GLN* 3.3 12.2 + - - +
360E ASP* 3.0 22.9 + - - +
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Residues in contact with ASN 357 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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353E VAL* 3.0 32.6 + - - +
354E GLU* 3.0 9.9 + - - +
356E ALA* 1.3 79.9 - - - +
358E TYR* 1.3 56.4 + - + +
360E ASP* 3.1 9.0 + - - +
361E THR* 2.9 34.0 + - - +
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Residues in contact with TYR 358 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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351E PHE* 5.2 2.2 - + - -
354E GLU* 3.0 40.4 + - + -
355E ALA* 3.6 5.6 - - - +
356E ALA 3.3 0.2 - - - -
357E ASN* 1.3 75.8 - - + +
359E GLN* 1.3 58.1 - - - +
361E THR* 3.2 6.2 + - - -
362E ILE* 2.9 35.9 + - - +
355F ALA* 4.0 24.6 - - + +
358F TYR* 3.4 37.0 - + + -
359F GLN* 2.9 40.5 + - + -
362F ILE* 3.6 21.5 - - + +
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Residues in contact with GLN 359 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355E ALA* 3.1 19.5 + - - +
356E ALA* 3.7 9.5 - - - +
357E ASN 3.3 0.2 - - - -
358E TYR* 1.3 77.1 - - - +
360E ASP* 1.3 58.3 + - - +
362E ILE* 3.7 8.8 - - + +
363E GLY* 2.9 26.5 + - - -
358F TYR* 3.0 30.1 + - + +
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Residues in contact with ASP 360 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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356E ALA 3.0 13.5 + - - +
357E ASN* 3.1 13.6 + - - +
359E GLN* 1.3 75.3 - - - +
361E THR* 1.3 67.4 + - - +
363E GLY* 3.3 1.5 + - - -
364E ARG* 2.9 28.7 + - - +
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Residues in contact with THR 361 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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357E ASN* 2.9 13.8 + - - +
358E TYR* 3.5 7.9 - - - -
360E ASP* 1.3 77.0 + - - +
362E ILE* 1.3 64.7 + - - +
364E ARG* 3.1 28.0 + - - +
365E LEU* 2.9 41.9 + - + +
362F ILE* 3.9 23.1 - - + +
366F GLN* 5.0 1.6 - - - +
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Residues in contact with ILE 362 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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358E TYR 2.9 21.9 + - - +
359E GLN* 3.7 7.2 - - + +
361E THR* 1.3 78.7 - - - +
363E GLY* 1.3 65.2 + - - +
365E LEU* 3.1 3.6 + - - +
366E GLN* 2.9 47.2 + - - +
358F TYR* 3.8 33.0 - - + +
361F THR* 3.8 29.4 - - + -
362F ILE* 3.6 17.3 - - + -
365F LEU* 4.1 14.4 - - + -
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Residues in contact with GLY 363 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359E GLN 2.9 19.4 + - - -
360E ASP* 3.3 2.0 + - - -
362E ILE* 1.3 73.6 - - - +
364E ARG* 1.3 61.0 + - - +
366E GLN* 3.3 17.5 + - - +
367E ASP* 3.0 30.1 + - - +
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Residues in contact with ARG 364 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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360E ASP* 2.9 17.3 + - - +
361E THR* 3.3 26.0 + - - +
363E GLY* 1.3 73.5 - - - +
365E LEU* 1.3 82.5 + - + +
367E ASP* 2.8 27.7 + - + +
368E GLU* 2.9 21.0 + - + +
366F GLN* 5.6 2.4 - - - +
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Residues in contact with LEU 365 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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361E THR* 2.9 28.8 + - + +
362E ILE* 3.5 6.5 - - - +
364E ARG* 1.3 99.5 - - - +
366E GLN* 1.3 62.1 + - - +
368E GLU* 3.1 15.0 + - - +
369E ILE* 2.9 29.1 + - - +
362F ILE* 4.1 11.4 - - + +
365F LEU* 4.0 26.9 - - + -
366F GLN* 3.6 30.7 - - + +
369F ILE* 4.1 21.0 - - + +
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Residues in contact with GLN 366 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362E ILE* 2.9 34.3 + - - +
363E GLY* 3.4 17.6 + - - +
365E LEU* 1.3 76.7 - - - +
367E ASP* 1.3 64.9 + - - +
369E ILE* 3.3 10.6 + - + +
370E GLN* 3.1 22.9 + - - +
361F THR* 5.4 1.6 - - - +
364F ARG* 5.9 0.3 + - - -
365F LEU* 4.1 18.5 - - + +
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Residues in contact with ASP 367 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363E GLY 3.0 21.7 + - - +
364E ARG* 2.8 12.0 + - + +
366E GLN* 1.3 76.6 - - - +
368E GLU* 1.3 58.6 + - - +
370E GLN* 3.2 6.7 + - - +
371E ASN* 2.8 32.7 + - - +
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Residues in contact with GLU 368 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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331D ASP* 4.8 14.4 - - - +
364E ARG* 2.9 19.0 + - + +
365E LEU* 3.4 22.0 - - - +
367E ASP* 1.3 77.6 - - - +
369E ILE* 1.3 56.2 + - - +
371E ASN* 3.4 9.9 + - - +
372E MET* 3.0 61.3 + - + +
369F ILE* 3.7 18.4 - - + +
373F LYS* 3.7 9.4 + - - -
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Residues in contact with ILE 369 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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365E LEU 2.9 17.5 + - - +
366E GLN* 3.5 11.2 - - - +
368E GLU* 1.3 77.0 - - - +
370E GLN* 1.3 61.3 + - - +
372E MET* 3.1 8.6 + - - +
373E LYS* 2.9 51.4 + - - +
365F LEU* 3.9 40.2 - - + +
368F GLU* 3.8 24.0 - - + +
369F ILE* 3.6 19.7 - - + -
372F MET* 3.9 14.4 - - - +
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Residues in contact with GLN 370 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366E GLN 3.1 11.6 + - - +
367E ASP* 3.7 7.6 - - - +
369E ILE* 1.3 78.0 - - - +
371E ASN* 1.3 66.5 + - - +
373E LYS* 3.3 30.0 + - - +
374E GLU* 3.1 49.5 + - - +
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Residues in contact with ASN 371 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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330D VAL* 5.9 1.6 - - - +
331D ASP* 3.3 21.9 + - - +
332D ALA* 2.7 46.0 + - - +
367E ASP 2.8 18.5 + - - +
368E GLU* 3.4 10.2 + - - +
370E GLN* 1.3 77.1 - - - +
372E MET* 1.3 64.4 + - - +
374E GLU* 3.2 17.2 + - - +
375E GLU 3.0 17.0 + - - -
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Residues in contact with MET 372 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332D ALA* 4.1 14.6 - - + -
368E GLU* 3.0 41.6 + - + +
369E ILE 3.1 7.2 + - - +
371E ASN* 1.3 75.4 - - + +
373E LYS* 1.3 67.8 + - - +
375E GLU* 3.0 2.2 + - - +
376E MET* 2.8 30.8 + - + +
369F ILE* 3.7 14.6 - - + +
372F MET* 3.8 33.0 - - + +
373F LYS* 3.3 36.6 - - + +
376F MET* 6.4 1.1 - - + -
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Residues in contact with LYS 373 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369E ILE* 2.9 35.0 + - - +
370E GLN* 3.3 31.5 + - - +
372E MET* 1.3 75.1 - - - +
374E GLU* 1.3 58.0 + - + +
376E MET* 3.6 6.2 + - - +
377E ALA* 3.1 26.7 + - - +
368F GLU* 5.7 3.3 + - - -
372F MET* 3.4 19.9 - - + +
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Residues in contact with GLU 374 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370E GLN* 3.1 39.8 + - - +
371E ASN* 3.4 16.4 - - - +
372E MET 3.0 0.6 - - - -
373E LYS* 1.3 76.5 - - + +
375E GLU* 1.3 59.9 + - - +
377E ALA* 3.1 8.6 + - - +
378E ARG* 2.9 27.5 + - - +
381E ARG* 4.8 1.6 + - - -
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Residues in contact with GLU 375 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332D ALA* 3.1 33.4 - - + -
333D LEU* 3.4 15.7 - - - +
336D THR* 2.9 46.7 + - + +
371E ASN 3.0 4.6 + - - +
372E MET* 3.0 6.3 + - - +
374E GLU* 1.3 76.3 - - - +
376E MET* 1.3 57.9 + - + +
378E ARG* 3.0 37.7 + - - +
379E HIS* 3.0 26.0 + - - +
376F MET* 4.1 4.5 - - + +
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Residues in contact with MET 376 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372E MET* 2.8 23.5 + - + +
373E LYS* 3.8 5.6 - - - +
375E GLU* 1.3 73.4 - - + +
377E ALA* 1.3 57.2 + - - +
379E HIS* 3.9 1.4 + - - +
380E LEU* 2.9 30.8 + - - +
372F MET* 4.1 38.8 - - - +
375F GLU* 3.2 35.0 - - + +
376F MET* 3.2 37.2 - - + +
379F HIS* 3.7 19.1 - - + +
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Residues in contact with ALA 377 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373E LYS 3.1 13.8 + - - +
374E GLU* 3.1 12.5 + - - +
376E MET* 1.3 75.8 - - - +
378E ARG* 1.3 67.5 + - - +
380E LEU* 3.5 9.0 + - - +
381E ARG* 3.3 44.7 + - - +
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Residues in contact with ARG 378 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339C SER* 4.1 11.3 - - - -
341C GLU* 2.8 42.1 + - - -
333D LEU* 3.4 19.6 - - - +
336D THR* 3.6 11.7 + - - -
337D ASN* 4.4 3.8 + - - -
340D LEU* 4.6 0.2 - - - +
374E GLU 2.9 12.6 + - - +
375E GLU* 3.0 41.8 + - - +
377E ALA* 1.3 75.6 - - - +
379E HIS* 1.3 66.1 + - - +
381E ARG* 3.0 30.3 + - - +
382E GLU* 3.2 23.4 + - + +
----------------------------------------------------------
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Residues in contact with HIS 379 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341C GLU* 2.9 37.4 - - + +
336D THR* 5.9 0.4 - - - -
340D LEU* 5.2 0.4 - - + +
375E GLU* 3.0 20.5 + - - +
376E MET 4.0 3.1 + - - +
378E ARG* 1.3 78.8 - - - +
380E LEU* 1.3 69.5 + - - +
382E GLU* 2.9 5.5 + - - +
383E TYR* 2.9 25.6 + + + +
376F MET* 4.2 10.3 - - + -
379F HIS* 3.8 38.0 - - + +
380F LEU* 3.6 29.1 - - + +
383F TYR* 3.6 26.6 - + + +
----------------------------------------------------------
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Residues in contact with LEU 380 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376E MET 2.9 20.2 + - - +
377E ALA* 3.8 8.5 - - - +
378E ARG 3.3 0.2 - - - -
379E HIS* 1.3 78.7 + - - +
381E ARG* 1.3 56.8 + - + +
383E TYR* 3.5 16.8 + - + -
384E GLN* 3.0 52.7 + - + +
379F HIS* 5.8 10.1 - - + +
----------------------------------------------------------
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Residues in contact with ARG 381 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374E GLU 4.8 1.4 + - - -
377E ALA* 3.3 38.9 + - - +
378E ARG* 3.0 21.5 + - - +
379E HIS 3.0 0.6 - - - -
380E LEU* 1.3 76.4 - - + +
382E GLU* 1.3 66.3 + - + +
383E TYR 3.1 1.6 - - - -
384E GLN* 3.2 19.5 + - - +
385E ASP* 2.9 24.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 382 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339C SER* 2.3 36.5 + - - -
341C GLU* 3.8 28.9 - - + +
342C ARG* 3.8 22.1 + - - +
345C ARG* 4.4 4.9 + - - -
378E ARG* 3.2 28.0 + - + +
379E HIS 2.9 8.2 + - - +
381E ARG* 1.3 78.0 - - + +
383E TYR* 1.3 62.5 + - - +
385E ASP* 3.4 6.7 + - - +
386E LEU* 3.1 22.5 + - - +
383F TYR* 4.1 4.7 + - + -
----------------------------------------------------------
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Residues in contact with TYR 383 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379E HIS* 2.9 16.6 + + + +
380E LEU* 3.6 24.2 - - + +
382E GLU* 1.3 75.3 - - - +
384E GLN* 1.3 61.6 + - + +
386E LEU* 3.1 3.1 + - - +
387E LEU* 2.8 51.3 + - + +
379F HIS 5.1 2.2 - - - -
382F GLU* 3.9 29.8 + - + +
383F TYR* 3.9 33.6 - + + -
386F LEU* 3.8 28.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 384 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380E LEU* 3.0 52.4 + - + +
381E ARG* 3.2 25.4 + - - +
383E TYR* 1.3 82.4 - - + +
385E ASP* 1.3 61.9 + - - +
387E LEU* 3.5 5.7 + - - +
388E ASN* 3.1 30.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 385 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342C ARG* 4.1 13.2 + - - -
345C ARG* 2.7 27.1 + - - -
381E ARG 2.9 16.1 + - - +
382E GLU* 3.6 9.6 - - - +
383E TYR 3.1 0.2 - - - -
384E GLN* 1.3 75.6 - - - +
386E LEU* 1.3 65.3 + - - +
388E ASN* 3.2 8.8 + - - +
389E VAL* 3.0 27.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 386 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345C ARG* 3.5 31.4 - - + +
382E GLU 3.1 14.3 + - - +
383E TYR 3.1 6.9 + - - +
385E ASP* 1.3 75.1 - - - +
387E LEU* 1.3 58.0 + - - +
389E VAL* 3.2 4.2 + - + +
390E LYS* 2.9 28.1 + - + +
383F TYR* 3.5 40.8 - - + +
386F LEU* 3.5 25.4 - - + -
387F LEU* 4.0 21.1 - - + +
390F LYS* 3.8 27.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 387 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383E TYR* 2.8 38.7 + - + +
384E GLN* 3.7 8.1 - - - +
386E LEU* 1.3 76.0 - - - +
388E ASN* 1.3 69.3 + - - +
390E LYS* 3.6 7.8 - - + +
391E MET* 2.9 69.6 + - + +
386F LEU* 3.8 25.3 - - + +
----------------------------------------------------------
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Residues in contact with ASN 388 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384E GLN* 3.1 20.4 + - - +
385E ASP* 3.2 12.7 + - - +
387E LEU* 1.3 85.9 - - - +
389E VAL* 1.3 66.6 + - + +
391E MET* 3.3 11.4 + - - +
392E ALA* 3.0 23.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 389 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345C ARG* 4.0 23.1 - - - +
349C GLU* 5.5 1.6 - - - +
385E ASP* 3.0 23.8 + - - +
386E LEU* 3.5 9.2 - - - +
388E ASN* 1.3 76.3 - - + +
390E LYS* 1.3 62.6 + - - +
392E ALA* 3.4 8.2 - - - +
393E LEU* 3.2 26.8 + - + +
390F LYS* 3.9 26.2 - - - -
----------------------------------------------------------
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Residues in contact with LYS 390 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A GLN* 5.7 1.1 + - - -
348B GLU* 5.3 8.7 + - - -
386E LEU* 2.9 17.3 + - + +
387E LEU* 3.6 10.8 - - + +
388E ASN 3.1 0.2 - - - -
389E VAL* 1.3 74.8 - - - +
391E MET* 1.3 70.0 + - + +
392E ALA 3.0 4.7 - - - -
393E LEU* 2.9 26.2 + - - +
394E ASP* 2.8 39.2 + - - +
386F LEU* 3.8 26.2 - - + -
389F VAL* 4.0 24.4 - - + +
390F LYS* 5.1 13.7 - - + -
393F LEU* 4.1 10.5 - - + -
----------------------------------------------------------
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Residues in contact with MET 391 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387E LEU* 2.9 49.4 + - + +
388E ASN* 3.3 11.8 + - - +
390E LYS* 1.3 81.9 - - + +
392E ALA* 1.3 60.8 + - - +
394E ASP* 3.4 16.9 - - - +
395E ILE* 3.3 26.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 392 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388E ASN 3.0 12.3 + - - +
389E VAL* 3.4 14.8 - - - +
390E LYS 3.0 0.2 - - - -
391E MET* 1.3 74.4 - - - +
393E LEU* 1.3 64.0 + - + +
395E ILE* 3.2 13.8 + - - +
396E GLU* 3.0 28.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 393 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389E VAL* 3.2 14.2 + - + +
390E LYS* 2.9 11.3 + - - +
392E ALA* 1.3 79.0 - - + +
394E ASP* 1.3 59.6 + - - +
396E GLU* 3.3 22.8 + - - +
397E ILE* 2.8 36.7 + - - +
390F LYS* 4.1 24.0 - - + -
393F LEU* 4.2 18.4 - - + -
394F ASP* 3.1 31.4 - - - +
397F ILE* 3.4 19.7 - - + -
----------------------------------------------------------
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Residues in contact with ASP 394 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A GLN* 5.4 0.9 - - - +
390E LYS* 2.8 42.2 + - - +
391E MET* 3.4 14.9 - - - +
392E ALA 3.2 0.2 - - - -
393E LEU* 1.3 76.7 - - - +
395E ILE* 1.3 63.8 + - + +
397E ILE* 3.2 7.3 + - - +
398E ALA* 2.9 23.6 + - - +
401E ARG* 5.2 1.6 + - - -
393F LEU* 3.3 26.9 - - - +
----------------------------------------------------------
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Residues in contact with ILE 395 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391E MET* 3.3 15.7 + - + +
392E ALA* 3.2 12.7 + - - +
394E ASP* 1.3 77.3 - - + +
396E GLU* 1.3 66.2 + - - +
398E ALA* 2.8 19.8 + - - +
399E THR* 3.1 22.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 396 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E ALA* 3.0 12.5 + - - +
393E LEU* 3.4 28.3 - - - +
395E ILE* 1.3 78.1 - - - +
397E ILE* 1.3 57.7 + - - +
399E THR* 2.8 21.1 + - - +
400E TYR* 2.8 40.1 + - + -
397F ILE* 4.2 12.5 - - + +
401F ARG* 3.0 29.3 + - - -
----------------------------------------------------------
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Residues in contact with ILE 397 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393E LEU 2.8 29.4 + - - +
394E ASP* 3.6 7.0 - - - +
396E GLU* 1.3 71.5 - - - +
398E ALA* 1.3 66.6 + - - +
399E THR 3.1 0.2 - - - -
400E TYR* 3.2 6.0 + - - +
401E ARG* 2.9 40.0 + - - +
393F LEU* 3.6 44.4 - - + +
396F GLU* 3.3 30.7 - - - +
397F ILE* 3.3 27.6 - - + -
400F TYR* 3.5 11.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 398 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394E ASP 2.9 12.1 + - - +
395E ILE* 2.8 13.1 + - - +
397E ILE* 1.3 78.1 - - - +
399E THR* 1.3 59.6 + - + +
401E ARG* 3.6 16.6 + - - +
402E LYS* 3.0 31.9 + - + +
----------------------------------------------------------
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Residues in contact with THR 399 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395E ILE* 3.1 19.6 + - + +
396E GLU* 2.8 26.5 + - - +
398E ALA* 1.3 77.9 - - + +
400E TYR* 1.3 66.7 + - - +
402E LYS* 3.0 19.3 + - + +
403E LEU* 3.0 22.1 + - - +
----------------------------------------------------------
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Residues in contact with TYR 400 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396E GLU* 2.8 49.0 + - + +
397E ILE* 3.2 6.3 + - - +
399E THR* 1.3 83.2 + - - +
401E ARG* 1.3 62.8 + - - +
403E LEU* 3.1 12.9 + - + +
404E LEU* 3.1 27.8 + - - +
397F ILE* 4.4 9.4 - - + -
400F TYR* 3.7 27.4 - + + -
401F ARG* 3.2 38.6 + - + -
404F LEU* 3.5 31.4 - - + -
----------------------------------------------------------
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Residues in contact with ARG 401 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A ALA* 6.2 1.3 - - + -
333A LEU* 6.4 1.3 - - + -
336A THR* 3.5 33.7 - - - +
340A LEU* 4.5 8.7 - - - +
341B GLU* 2.6 34.0 + - - -
394E ASP 5.2 1.4 + - - -
397E ILE* 2.9 39.3 + - - +
398E ALA* 3.7 14.8 - - - +
400E TYR* 1.3 77.1 - - - +
402E LYS* 1.3 62.6 + - - +
404E LEU* 3.1 24.4 + - + +
405E GLU* 3.5 8.6 + - - +
396F GLU* 4.2 6.7 + - - -
400F TYR* 3.4 20.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 402 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398E ALA* 3.0 19.3 + - + +
399E THR* 3.0 15.3 + - + +
401E ARG* 1.3 77.6 - - - +
403E LEU* 1.3 66.2 + - + +
404E LEU 3.4 0.3 + - - -
405E GLU* 3.3 49.9 + - - +
406E GLY* 4.6 0.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU 403 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399E THR* 3.0 14.9 + - - +
400E TYR* 3.1 13.2 + - + +
402E LYS* 1.3 81.7 - - + +
404E LEU* 1.3 63.0 + - + +
405E GLU 3.3 1.1 - - - -
406E GLY* 2.7 24.8 - - - +
404F LEU* 5.2 17.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU 404 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A CYS* 4.5 24.7 - - + -
329A GLU* 4.1 21.6 - - - +
332A ALA* 3.8 21.9 - - + +
333A LEU* 5.7 3.1 - - - +
400E TYR 3.1 16.4 + - - +
401E ARG* 3.1 9.7 + - + +
403E LEU* 1.3 79.6 - - - +
405E GLU* 1.3 56.7 + - - +
406E GLY* 3.3 6.1 - - - +
400F TYR* 3.7 46.7 - - + +
403F LEU* 4.5 5.8 - - + -
404F LEU* 3.6 32.8 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il