Contacts of the helix formed by residues 339 - 405 (chain C) in PDB entry 1GK4
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 339 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338C GLU* 1.3 78.8 - - - +
340C LEU* 1.3 64.9 + - - +
341C GLU* 3.5 8.9 + - - -
342C ARG* 3.1 20.0 + - - +
343C GLN* 3.0 18.0 + - - +
378E ARG* 4.1 9.4 - - - -
382E GLU* 2.3 31.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 340 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338C GLU 3.6 1.6 + - - +
339C SER* 1.3 69.7 - - - +
341C GLU* 1.3 66.9 + - - +
343C GLN* 3.3 24.0 + - - +
344C MET* 2.9 27.7 + - - +
337D ASN* 3.1 62.3 + - + +
340D LEU* 3.4 23.8 - - + -
341D GLU* 3.9 17.5 - - - +
344D MET* 3.4 32.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 341 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339C SER* 3.5 7.6 - - - -
340C LEU* 1.3 75.0 + - - +
342C ARG* 1.3 57.9 + - - +
344C MET* 2.9 9.0 + - - +
345C ARG* 2.8 25.5 + - - +
340D LEU* 3.6 15.8 - - + +
378E ARG* 2.8 44.8 + - - -
379E HIS* 2.9 26.7 - - + +
382E GLU* 3.8 25.8 - - + +
383F TYR* 3.1 41.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 342 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338C GLU* 3.3 41.8 + - + +
339C SER* 3.1 22.6 + - - +
341C GLU* 1.3 78.1 - - - +
343C GLN* 1.3 62.6 + - - +
345C ARG* 3.2 38.1 + - - +
346C GLU* 3.1 22.7 + - - +
382E GLU* 3.8 16.2 + - - +
385E ASP* 4.1 13.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 343 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C ASN* 3.6 23.4 + - - +
338C GLU* 3.1 29.3 - - + +
339C SER 3.0 11.9 + - - +
340C LEU* 3.5 28.6 - - - +
341C GLU 3.1 0.2 - - - -
342C ARG* 1.3 75.9 - - - +
344C MET* 1.3 63.0 + - - +
346C GLU* 3.2 8.4 + - - +
347C MET* 3.0 27.6 + - + +
344D MET* 4.0 18.4 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 344 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340C LEU 2.9 14.2 + - - +
341C GLU* 2.9 9.0 + - - +
343C GLN* 1.3 74.5 - - - +
345C ARG* 1.3 65.9 + - - +
347C MET* 3.0 11.3 + - - +
348C GLU* 2.8 24.3 + - - +
340D LEU* 3.9 27.4 - - - +
343D GLN* 3.2 44.2 - - + +
344D MET* 3.3 22.9 - - + -
347D MET* 3.5 25.3 - - + +
383F TYR* 4.5 9.9 - - + -
384F GLN* 4.9 4.9 - - + +
387F LEU* 3.8 17.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 345 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341C GLU 2.8 12.6 + - - +
342C ARG* 3.5 41.2 - - - +
344C MET* 1.3 77.7 - - - +
346C GLU* 1.3 55.9 + - - +
348C GLU* 3.4 2.6 + - - +
349C GLU* 3.0 53.9 + - - +
382E GLU* 4.4 4.2 + - - -
385E ASP* 2.7 30.9 + - - +
386E LEU* 3.5 48.6 - - + +
389E VAL* 4.0 18.8 - - - +
383F TYR* 4.7 5.0 + - - +
387F LEU* 4.1 15.8 - - + +
390F LYS* 4.4 7.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 346 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342C ARG 3.1 12.7 + - - +
343C GLN* 3.6 10.1 - - - +
345C ARG* 1.3 76.0 - - - +
347C MET* 1.3 64.7 + - - +
349C GLU* 3.4 13.4 + - - +
350C ASN* 3.1 39.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 347 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343C GLN* 3.0 17.4 + - + +
344C MET* 3.0 8.5 + - - +
346C GLU* 1.3 76.5 - - + +
348C GLU* 1.3 64.0 + - - +
350C ASN* 3.2 8.0 + - - +
351C PHE* 3.0 45.6 + - + -
344D MET* 3.3 47.1 - - + +
347D MET* 4.0 10.1 - - + +
348D GLU* 3.2 41.3 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 348 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344C MET 2.8 11.0 + - - +
345C ARG 3.5 7.3 - - - +
347C MET* 1.3 77.3 - - - +
349C GLU* 1.3 60.6 + - - +
351C PHE* 3.2 7.2 + - - +
352C ALA* 2.8 26.3 + - - +
347D MET* 3.7 13.8 - - + +
387F LEU* 3.7 33.4 - - + +
390F LYS* 2.9 32.3 + - - +
391F MET* 3.1 35.3 - - + +
394F ASP* 2.6 25.1 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 349 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345C ARG* 3.0 31.9 + - - +
346C GLU* 3.8 12.9 - - + +
347C MET 3.3 0.2 - - - -
348C GLU* 1.3 81.0 - - - +
350C ASN* 1.3 65.8 + - - +
352C ALA* 3.4 5.3 + - - +
353C VAL* 3.3 26.7 + - - +
389E VAL* 5.5 1.4 - - - +
390F LYS* 2.7 37.0 + - - +
394F ASP* 4.0 4.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 350 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346C GLU* 3.1 34.3 + - - +
347C MET* 3.7 6.3 - - - +
349C GLU* 1.3 77.8 + - - +
351C PHE* 1.3 68.1 + - + +
353C VAL* 2.8 31.0 - - + +
354C GLU* 3.3 12.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 351 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
347C MET* 3.0 50.4 + - + -
348C GLU* 3.6 5.8 - - - +
350C ASN* 1.3 78.6 - - + +
352C ALA* 1.3 58.1 + - - +
354C GLU* 3.2 19.2 + - - +
355C ALA* 2.9 30.0 + - - +
347D MET* 4.2 23.8 - - + -
348D GLU* 4.1 19.1 - - + -
351D PHE* 3.2 42.1 - + + -
391F MET* 3.8 17.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 352 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348C GLU* 2.8 17.2 + - - +
349C GLU 3.4 10.5 - - - +
350C ASN 3.2 0.2 - - - -
351C PHE* 1.3 77.3 - - - +
353C VAL* 1.3 58.8 + - + +
355C ALA* 3.2 2.9 + - - +
356C ALA* 2.9 29.3 + - - +
391F MET* 3.8 10.7 - - - -
394F ASP* 3.6 32.8 - - + +
395F ILE* 3.6 18.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 353 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349C GLU 3.3 11.9 + - - +
350C ASN* 2.8 32.5 - - + +
352C ALA* 1.3 74.1 - - + +
354C GLU* 1.3 70.9 + - + +
356C ALA* 3.3 7.2 + - - +
357C ASN* 3.1 33.9 + - - +
398F ALA* 5.3 8.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 354 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350C ASN* 3.5 12.5 - - - +
351C PHE* 3.2 30.5 + - - +
353C VAL* 1.3 85.9 - - + +
355C ALA* 1.3 58.5 + - - +
357C ASN* 3.3 7.2 + - - +
358C TYR* 2.9 47.8 + - + -
351D PHE* 3.6 22.3 - - + -
355D ALA* 5.4 0.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 355 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351C PHE 2.9 16.6 + - - +
352C ALA 3.5 4.9 - - - +
354C GLU* 1.3 77.1 - - - +
356C ALA* 1.3 64.0 + - - +
358C TYR* 3.1 3.3 + - - +
359C GLN* 2.9 29.8 + - - +
351D PHE* 4.0 6.7 - - + -
354D GLU* 3.9 16.8 - - - +
358D TYR* 4.1 13.9 - - - +
391F MET* 4.4 0.9 - - + -
395F ILE* 3.6 25.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 356 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352C ALA 2.9 15.5 + - - +
353C VAL* 3.7 5.8 - - - +
355C ALA* 1.3 77.1 - - - +
357C ASN* 1.3 57.9 + - - +
359C GLN* 3.4 4.6 + - - +
360C ASP* 3.0 28.2 + - - +
395F ILE* 4.0 17.4 - - + +
398F ALA* 3.5 32.5 - - + -
399F THR* 4.7 7.5 + - - +
402F LYS* 4.4 11.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 357 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353C VAL* 3.1 22.8 + - - +
354C GLU* 3.6 5.9 - - - +
356C ALA* 1.3 71.9 - - - +
358C TYR* 1.3 67.2 + - + +
360C ASP* 3.1 7.4 + - - +
361C THR* 2.9 27.0 + - - +
402F LYS* 2.6 38.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 358 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354C GLU* 2.9 36.5 + - + -
355C ALA* 3.1 4.5 + - - +
357C ASN* 1.3 76.5 - - + +
359C GLN* 1.3 59.2 + - - +
361C THR* 3.1 7.6 + - - -
362C ILE* 2.9 32.6 + - - +
351D PHE* 4.3 8.3 - + - -
355D ALA* 3.9 21.6 - - + +
358D TYR* 3.1 40.2 - + + -
359D GLN* 3.3 37.8 + - + -
362D ILE* 3.8 20.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 359 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335A GLY* 6.2 0.8 - - - -
338A GLU* 3.8 35.0 - - - +
342A ARG* 4.5 1.0 + - - -
355C ALA 2.9 18.6 + - - +
356C ALA* 3.7 5.2 - - - +
358C TYR* 1.3 75.7 - - - +
360C ASP* 1.3 56.5 + - - +
362C ILE* 3.7 10.3 - - + +
363C GLY* 2.9 25.1 + - - -
358D TYR* 3.1 31.8 + - + +
395F ILE* 3.7 29.8 - - - +
399F THR* 4.8 6.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 360 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356C ALA 3.0 15.2 + - - +
357C ASN* 3.4 8.4 - - - +
358C TYR 3.1 0.4 - - - -
359C GLN* 1.3 74.8 - - - +
361C THR* 1.3 72.2 + - - +
363C GLY* 3.2 2.5 + - - -
364C ARG* 3.0 36.0 + - - +
402F LYS* 3.8 33.4 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 361 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357C ASN* 2.9 14.6 + - - +
358C TYR* 3.4 8.4 - - - -
360C ASP* 1.3 80.6 + - - +
362C ILE* 1.3 63.2 + - - +
364C ARG* 2.9 38.9 + - - +
365C LEU* 3.0 15.8 + - + +
362D ILE* 3.6 35.6 - - + +
366D GLN* 5.7 1.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 362 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358C TYR 2.9 17.3 + - - +
359C GLN* 3.7 7.4 - - - +
361C THR* 1.3 77.8 - - - +
363C GLY* 1.3 64.6 + - - +
365C LEU* 3.4 0.6 + - - -
366C GLN* 3.0 51.4 + - - +
358D TYR* 3.6 33.4 - - + -
361D THR* 3.8 33.0 - - + -
362D ILE* 3.6 23.1 - - + +
365D LEU* 3.8 8.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 363 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359C GLN 2.9 16.2 + - - -
360C ASP* 3.2 3.1 + - - -
362C ILE* 1.3 78.6 - - - +
364C ARG* 1.3 55.9 + - - +
366C GLN* 3.3 17.3 + - - +
367C ASP* 3.1 34.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 364 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360C ASP* 3.0 26.3 + - - +
361C THR* 2.9 30.8 + - - +
363C GLY* 1.3 74.0 - - - +
365C LEU* 1.3 91.3 + - - +
367C ASP* 3.3 11.5 + - - +
368C GLU* 3.0 42.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 365 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361C THR* 3.0 24.3 + - + +
364C ARG* 1.3 106.0 - - - +
366C GLN* 1.3 58.2 + - - +
368C GLU* 3.3 14.0 + - - +
369C ILE* 3.0 32.6 + - - +
362D ILE* 3.8 16.4 - - + +
365D LEU* 3.8 32.1 - - + -
366D GLN* 3.6 33.7 - - + +
369D ILE* 4.0 10.1 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 366 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334A LYS* 5.5 7.5 - - - +
362C ILE* 3.0 39.6 + - - +
363C GLY* 3.3 16.8 + - - +
364C ARG 3.2 0.2 - - - -
365C LEU* 1.3 78.9 - - - +
367C ASP* 1.3 58.4 + - - +
369C ILE* 3.3 9.8 + - + +
370C GLN* 3.0 28.2 + - - +
361D THR* 5.3 0.5 - - - +
364D ARG* 5.2 6.8 + - - -
365D LEU* 3.8 17.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 367 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331A ASP* 4.7 10.4 - - - +
334A LYS* 5.1 9.2 + - - -
363C GLY 3.1 22.2 + - - +
364C ARG* 3.6 10.3 - - - +
365C LEU 3.3 0.2 - - - -
366C GLN* 1.3 75.9 - - - +
368C GLU* 1.3 65.1 + - - +
370C GLN* 3.5 6.7 + - - +
371C ASN* 3.1 31.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 368 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364C ARG* 3.0 30.0 + - - +
365C LEU* 3.5 18.3 - - - +
366C GLN 3.2 0.2 - - - -
367C ASP* 1.3 75.7 - - - +
369C ILE* 1.3 59.4 + - - +
371C ASN* 3.2 6.9 + - + +
372C MET* 2.9 56.2 + - + +
369D ILE* 3.8 21.3 - - + +
373D LYS* 4.5 7.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 369 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365C LEU 3.0 14.2 + - - +
366C GLN* 3.6 9.6 - - - +
368C GLU* 1.3 75.2 - - - +
370C GLN* 1.3 59.8 + - - +
372C MET* 3.3 2.4 + - - +
373C LYS* 2.9 58.3 + - - +
365D LEU* 3.8 32.3 - - + +
368D GLU* 3.6 36.6 - - + +
369D ILE* 3.2 22.4 - - + -
372D MET* 3.6 13.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 370 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366C GLN 3.0 16.6 + - - +
367C ASP* 3.7 9.4 - - - +
368C GLU 3.2 0.2 - - - -
369C ILE* 1.3 78.2 - - - +
371C ASN* 1.3 63.6 + - - +
373C LYS* 3.4 19.1 + - - +
374C GLU* 3.1 58.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 371 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367C ASP* 3.1 22.3 + - - +
368C GLU* 3.5 7.8 - - - +
369C ILE 3.2 0.2 - - - -
370C GLN* 1.3 77.8 - - - +
372C MET* 1.3 60.2 + - - +
374C GLU* 3.0 19.1 + - - +
375C GLU* 2.9 30.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 372 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368C GLU* 2.9 55.4 + - + +
369C ILE* 3.7 4.7 - - - +
371C ASN* 1.3 76.4 - - - +
373C LYS* 1.3 63.4 + - - +
375C GLU* 3.3 7.9 + - + +
376C MET* 2.9 36.5 + - + +
369D ILE* 4.1 22.9 - - + +
372D MET* 4.1 32.5 - - + +
373D LYS* 4.2 21.5 - - - +
376D MET* 6.1 4.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 373 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369C ILE* 2.9 42.5 + - + +
370C GLN* 3.5 22.6 + - - +
371C ASN 3.2 0.2 - - - -
372C MET* 1.3 77.2 - - - +
374C GLU* 1.3 60.0 + - + +
376C MET* 3.4 7.4 + - - +
377C ALA* 3.1 23.2 + - - +
368D GLU* 4.0 11.7 + - - -
372D MET* 4.3 12.1 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 374 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370C GLN* 3.1 43.7 + - - +
371C ASN* 3.0 17.9 + - - +
373C LYS* 1.3 74.3 - - - +
375C GLU* 1.3 64.5 + - - +
377C ALA* 3.2 7.8 + - - +
378C ARG* 3.0 23.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 375 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371C ASN 2.9 15.7 + - - +
372C MET* 3.7 8.7 - - + +
374C GLU* 1.3 76.4 - - - +
376C MET* 1.3 57.6 + - - +
378C ARG* 2.6 48.7 + - - +
379C HIS* 2.9 26.7 + - - +
376D MET* 3.5 20.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 376 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372C MET* 2.9 26.0 + - + +
373C LYS* 3.8 6.1 - - - +
375C GLU* 1.3 75.9 - - - +
377C ALA* 1.3 58.6 + - - +
379C HIS* 3.8 1.6 - - - +
380C LEU* 2.8 31.8 + - - +
372D MET* 4.3 33.4 - - - +
375D GLU* 3.5 24.7 - - + +
376D MET* 3.4 40.4 - - + +
379D HIS* 3.4 29.8 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 377 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373C LYS 3.1 14.3 + - - +
374C GLU* 3.6 10.5 - - - +
375C GLU 3.2 0.2 - - - -
376C MET* 1.3 76.2 - - - +
378C ARG* 1.3 63.0 + - - +
380C LEU* 3.5 10.3 + - - +
381C ARG* 3.1 26.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 378 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374C GLU 3.0 13.9 + - - +
375C GLU* 2.6 46.8 + - - +
377C ALA* 1.3 77.9 - - - +
379C HIS* 1.3 78.8 + - - +
381C ARG* 3.2 15.6 + - - +
382C GLU* 3.3 42.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 379 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375C GLU* 2.9 17.2 + - - +
376C MET 3.8 3.4 - - - +
378C ARG* 1.3 93.2 + - - +
380C LEU* 1.3 69.3 + - - +
382C GLU* 2.8 21.9 + - - +
383C TYR* 2.9 15.8 + - + +
376D MET* 4.0 15.5 - - + -
379D HIS* 3.9 26.5 + + + +
380D LEU* 3.5 33.3 - - + +
383D TYR* 3.7 42.7 - + + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 380 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376C MET 2.8 22.0 + - - +
377C ALA* 3.7 9.6 - - - +
379C HIS* 1.3 75.6 - - - +
381C ARG* 1.3 57.7 + - + +
383C TYR* 3.2 17.6 + - + +
384C GLN* 2.9 56.3 + - + +
379D HIS* 5.9 11.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 381 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377C ALA 3.1 14.9 + - - +
378C ARG* 3.5 11.2 - - - +
379C HIS 3.1 0.4 - - - -
380C LEU* 1.3 73.1 - - - +
382C GLU* 1.3 60.1 + - + +
384C GLN* 3.7 14.9 - - + +
385C ASP* 3.0 28.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 382 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378C ARG* 3.3 33.5 + - + +
379C HIS* 2.8 13.9 + - - +
381C ARG* 1.3 74.6 - - - +
383C TYR* 1.3 66.2 + - - +
385C ASP* 3.2 9.9 + - - +
386C LEU* 2.9 24.1 + - - +
383D TYR* 3.8 22.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 383 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379C HIS* 2.9 16.6 + - + +
380C LEU* 3.4 20.0 - - + +
382C GLU* 1.3 77.0 - - - +
384C GLN* 1.3 67.1 + - + +
386C LEU* 3.1 4.5 + - - +
387C LEU* 2.9 50.3 + - + +
379D HIS 5.0 2.0 - - - -
382D GLU* 3.8 37.8 + - + +
383D TYR* 3.8 31.1 - + + -
386D LEU* 3.7 28.4 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 384 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380C LEU* 2.9 50.0 + - + +
381C ARG* 3.7 19.3 + - + +
383C TYR* 1.3 79.1 - - + +
385C ASP* 1.3 57.8 + - - +
387C LEU* 3.4 12.1 + - + +
388C ASN* 3.0 26.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 385 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381C ARG 3.0 18.2 + - - +
382C GLU* 3.6 11.8 - - - +
383C TYR 3.1 0.2 - - - -
384C GLN* 1.3 75.0 - - - +
386C LEU* 1.3 67.2 + - - +
388C ASN* 3.1 15.1 + - - +
389C VAL* 3.0 32.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 386 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382C GLU 2.9 13.1 + - - +
383C TYR 3.6 7.0 - - - +
385C ASP* 1.3 76.9 + - - +
387C LEU* 1.3 56.6 + - - +
389C VAL* 3.2 8.0 + - + +
390C LYS* 2.8 30.6 + - + +
383D TYR* 3.5 39.9 - - + +
386D LEU* 3.6 26.9 - - + -
387D LEU* 3.9 26.9 - - + +
390D LYS* 3.5 36.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 387 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383C TYR* 2.9 35.9 + - + +
384C GLN* 3.5 11.0 - - + +
386C LEU* 1.3 77.4 - - - +
388C ASN* 1.3 56.9 + - - +
390C LYS* 3.3 10.4 + - + +
391C MET* 3.0 50.6 + - + +
386D LEU* 3.6 20.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 388 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384C GLN 3.0 13.4 + - - +
385C ASP* 3.1 19.5 + - - +
387C LEU* 1.3 77.0 - - - +
389C VAL* 1.3 63.7 + - - +
391C MET* 3.5 10.1 + - - +
392C ALA* 3.2 21.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 389 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385C ASP* 3.0 29.5 + - - +
386C LEU* 3.6 10.3 - - + +
388C ASN* 1.3 76.8 - - + +
390C LYS* 1.3 67.4 + - - +
392C ALA* 3.1 9.9 + - + +
393C LEU* 3.0 31.2 + - + +
390D LYS* 3.7 28.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 390 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386C LEU 2.8 17.0 + - - +
387C LEU* 3.4 12.7 - - + +
389C VAL* 1.3 77.3 - - - +
391C MET* 1.3 67.4 + - + +
393C LEU* 2.9 29.2 + - - +
394C ASP* 2.7 38.1 + - - +
386D LEU* 3.9 22.9 - - + -
389D VAL* 3.9 24.0 - - + -
390D LYS* 5.1 10.1 - - + +
393D LEU* 4.0 11.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with MET 391 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387C LEU* 3.0 40.0 + - + +
388C ASN* 3.8 9.6 - - - +
389C VAL 3.3 0.4 - - - -
390C LYS* 1.3 84.2 - - + +
392C ALA* 1.3 61.4 + - - +
394C ASP* 3.3 16.6 + - - +
395C ILE* 3.3 19.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 392 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388C ASN 3.2 12.0 + - - +
389C VAL* 3.1 12.8 + - + +
391C MET* 1.3 77.6 - - - +
393C LEU* 1.3 64.9 + - + +
395C ILE* 3.4 10.3 + - - +
396C GLU* 3.1 20.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 393 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389C VAL* 3.0 23.8 + - + +
390C LYS* 2.9 11.9 + - - +
392C ALA* 1.3 78.8 - - + +
394C ASP* 1.3 59.9 + - - +
396C GLU* 3.2 14.1 + - - +
397C ILE* 2.9 34.7 + - - +
390D LYS* 3.6 37.9 - - + -
393D LEU* 4.2 17.0 - - + -
394D ASP* 3.8 17.0 - - - +
397D ILE* 3.7 23.1 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 394 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390C LYS* 2.7 44.1 + - - +
391C MET* 3.5 13.2 - - - +
392C ALA 3.3 0.4 - - - -
393C LEU* 1.3 78.4 - - - +
395C ILE* 1.3 60.3 + - + +
397C ILE* 3.7 5.5 + - - +
398C ALA* 3.1 26.9 + - - +
393D LEU* 3.4 27.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 395 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391C MET 3.3 15.6 + - - +
392C ALA* 3.6 10.8 - - - +
393C LEU 3.1 0.2 - - - -
394C ASP* 1.3 79.8 - - + +
396C GLU* 1.3 66.5 + - - +
398C ALA* 3.0 9.9 + - + +
399C THR* 2.9 31.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 396 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392C ALA 3.1 10.4 + - - +
393C LEU* 3.4 19.7 - - - +
395C ILE* 1.3 80.5 - - - +
397C ILE* 1.3 62.2 + - - +
399C THR* 3.2 17.1 + - - -
400C TYR* 2.9 50.8 + - + +
397D ILE* 3.5 28.8 - - + +
401D ARG* 4.7 1.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 397 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393C LEU 2.9 17.7 + - - +
394C ASP* 3.9 6.1 - - - +
396C GLU* 1.3 72.9 - - - +
398C ALA* 1.3 67.1 + - - +
399C THR 3.0 1.8 - - - -
400C TYR* 2.9 10.2 + - - +
401C ARG* 2.8 26.7 + - + +
393D LEU* 3.7 48.7 - - + +
396D GLU* 3.8 25.8 - - + +
397D ILE* 3.4 22.0 - - + -
400D TYR* 3.9 17.7 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 398 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394C ASP 3.1 15.3 + - - +
395C ILE* 3.0 15.1 + - + +
397C ILE* 1.3 78.6 - - - +
399C THR* 1.3 57.7 + - - +
401C ARG* 3.8 9.9 - - - +
402C LYS* 2.9 32.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 399 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395C ILE* 2.9 22.3 + - - +
396C GLU* 3.3 12.1 + - - -
398C ALA* 1.3 74.3 - - - +
400C TYR* 1.3 70.5 + - + +
402C LYS* 2.8 20.9 + - + +
403C LEU* 2.8 34.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 400 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396C GLU* 2.9 54.7 + - + -
397C ILE* 2.9 9.7 + - - +
399C THR* 1.3 78.8 - - + +
401C ARG* 1.3 59.7 + - - +
403C LEU* 2.8 31.4 + - + +
404C LEU* 3.0 13.9 + - - +
397D ILE* 3.9 15.5 - - + -
400D TYR* 3.6 37.0 - + + -
401D ARG* 3.6 34.6 + - + +
404D LEU* 3.4 29.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 401 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397C ILE* 2.8 22.9 + - + +
398C ALA* 3.9 9.4 - - - +
400C TYR* 1.3 74.3 - - - +
402C LYS* 1.3 60.8 + - - +
404C LEU* 3.4 4.1 + - - +
405C GLU* 3.1 53.0 + - - +
400D TYR* 3.7 25.2 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 402 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398C ALA* 2.9 16.9 + - - +
399C THR* 2.8 24.6 + - + +
401C ARG* 1.3 76.9 - - - +
403C LEU* 1.3 63.2 + - + +
405C GLU* 3.3 16.6 + - + +
406C GLY* 3.5 8.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 403 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399C THR* 2.8 25.7 + - + +
400C TYR* 2.8 17.6 + - + +
402C LYS* 1.3 80.3 - - + +
404C LEU* 1.3 60.9 + - - +
406C GLY* 3.7 9.1 + - - -
404D LEU* 4.3 31.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 404 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400C TYR 3.0 13.1 + - - +
401C ARG* 4.1 7.0 - - - +
402C LYS 3.2 0.2 - - - -
403C LEU* 1.3 77.9 - - - +
405C GLU* 1.3 61.3 + - - +
406C GLY 3.0 12.2 + - - +
400D TYR* 4.6 15.0 - - + -
403D LEU* 3.7 44.0 - - + -
404D LEU* 4.9 13.0 - - + -
407D GLU* 5.1 6.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 405 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401C ARG* 3.1 57.1 + - - +
402C LYS* 3.3 8.1 + - + +
404C LEU* 1.3 76.7 - - - +
406C GLY* 1.3 68.3 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il