Contacts of the helix formed by residues 355 - 405 (chain B) in PDB entry 1GK6
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 355 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355A MET* 2.8 57.7 - - + +
358A LEU* 3.5 12.8 - - + +
359A GLU* 5.8 0.7 - - - +
356B LYS* 1.3 62.3 + - - +
357B GLN* 3.7 1.6 - - - -
358B LEU* 3.2 41.5 - - + +
359B GLU* 3.4 15.7 + - - +
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Residues in contact with LYS 356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355B MET* 1.3 71.7 - - - +
357B GLN* 1.3 65.0 + - - +
358B LEU 2.8 5.4 - - - -
359B GLU* 2.2 46.9 + - + +
360B ASP* 2.9 42.9 + - - +
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Residues in contact with GLN 357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355B MET 3.7 1.0 - - - -
356B LYS* 1.3 83.8 - - - +
358B LEU* 1.3 57.4 + - + +
360B ASP* 3.6 18.4 + - - +
361B LYS* 3.1 28.1 + - - +
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Residues in contact with LEU 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A LEU* 3.8 25.6 - - + +
359A GLU* 4.4 25.1 - - + +
362A VAL* 4.1 21.1 - - + +
355B MET* 3.2 45.7 + - + +
356B LYS 2.6 3.0 + - - -
357B GLN* 1.3 78.0 - - + +
359B GLU* 1.3 56.4 + - - +
361B LYS* 3.3 6.6 + - + +
362B VAL* 2.9 32.2 + - - +
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Residues in contact with GLU 359 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A LEU* 4.0 25.3 - - + +
355B MET* 3.4 24.8 + - - +
356B LYS* 2.2 35.5 + - + +
358B LEU* 1.3 66.4 - - - +
360B ASP* 1.3 66.2 + - - +
362B VAL* 3.2 4.1 + - - +
363B GLU* 3.0 23.4 + - - +
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Residues in contact with ASP 360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356B LYS* 2.9 50.0 + - - +
357B GLN* 4.0 19.3 - - - +
359B GLU* 1.3 76.2 - - - +
361B LYS* 1.3 60.7 + - - +
363B GLU* 3.4 5.0 + - - +
364B GLU* 2.9 29.9 + - - +
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Residues in contact with LYS 361 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A VAL* 4.4 14.8 - - + -
366A LEU* 6.2 2.4 - - + +
357B GLN 3.1 18.6 + - - +
358B LEU* 3.5 9.6 - - + +
359B GLU 3.2 0.2 - - - -
360B ASP* 1.3 72.9 - - - +
362B VAL* 1.3 67.4 + - - +
364B GLU* 2.7 33.6 + - - +
365B LEU* 2.9 52.1 + - + +
368B LYS* 5.2 2.6 - - - +
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Residues in contact with VAL 362 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A LEU* 4.1 19.3 - - + +
361A LYS* 3.6 32.1 - - + -
362A VAL* 3.4 23.6 - - + +
365A LEU* 3.9 3.1 - - + -
358B LEU 2.9 21.5 + - - +
359B GLU* 3.7 6.1 - - - +
361B LYS* 1.3 78.7 - - - +
363B GLU* 1.3 58.3 + - - +
365B LEU* 3.3 5.9 + - - +
366B LEU* 2.9 45.0 + - + +
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Residues in contact with GLU 363 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359B GLU 3.0 16.3 + - - +
360B ASP* 4.1 5.2 - - - +
361B LYS 3.3 0.2 - - - -
362B VAL* 1.3 76.5 - - - +
364B GLU* 1.3 65.9 + - - +
366B LEU* 3.4 22.7 + - - +
367B SER* 3.2 22.9 + - - -
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Residues in contact with GLU 364 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360B ASP 2.9 16.8 + - - +
361B LYS* 2.7 40.9 + - - +
363B GLU* 1.3 78.7 - - - +
365B LEU* 1.3 58.5 + - - +
367B SER* 3.3 5.5 + - - -
368B LYS* 3.1 59.1 + - + +
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Residues in contact with LEU 365 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A VAL* 3.9 25.8 - - + +
365A LEU* 3.7 21.7 - - + +
366A LEU* 3.7 41.5 - - + -
369A ASN* 3.4 19.2 + - - +
361B LYS* 2.9 38.1 + - + +
362B VAL* 3.7 4.9 - - - +
364B GLU* 1.3 75.7 - - + +
366B LEU* 1.3 59.2 + - - +
368B LYS* 4.4 19.5 - - + +
369B ASN* 2.9 29.8 + - - +
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Residues in contact with LEU 366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361A LYS* 5.5 4.3 - - + -
365A LEU* 3.8 24.7 - - + -
362B VAL* 2.9 37.8 + - + +
363B GLU* 3.4 27.1 + - - +
365B LEU* 1.3 71.6 - - - +
367B SER* 1.3 58.4 + - - +
369B ASN* 3.4 11.3 + - - +
370B TYR* 2.9 28.1 + - - +
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Residues in contact with SER 367 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B GLU* 3.2 13.8 + - - -
364B GLU* 3.6 9.2 - - - -
366B LEU* 1.3 75.1 - - - +
368B LYS* 1.3 67.5 + - - +
370B TYR* 3.1 6.7 + - - +
371B HIS* 3.0 47.0 + - - -
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Residues in contact with LYS 368 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A ASN* 3.8 15.3 - - - +
361B LYS* 5.2 3.0 - - - +
364B GLU* 3.1 49.1 + - + +
365B LEU* 3.4 18.5 + - + +
367B SER* 1.3 76.1 + - - +
369B ASN* 1.3 57.0 + - - +
371B HIS* 3.3 6.6 + - - +
372B LEU* 2.8 40.6 + - + +
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Residues in contact with ASN 369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365A LEU* 4.5 12.5 - - + +
368A LYS* 4.0 15.8 - - - +
369A ASN* 3.0 25.5 + - - +
372A LEU* 3.5 16.9 - - - +
365B LEU 2.9 16.8 + - - +
366B LEU* 3.6 12.5 + - - +
368B LYS* 1.3 75.1 - - - +
370B TYR* 1.3 59.3 + - - +
372B LEU* 3.3 3.5 + - - +
373B GLU* 2.8 54.4 + - - +
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Residues in contact with TYR 370 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366B LEU 2.9 15.1 + - - +
367B SER* 3.1 9.6 + - - +
369B ASN* 1.3 81.0 - - - +
371B HIS* 1.3 87.4 + + - +
373B GLU* 3.3 9.6 + - + +
374B ASN* 3.0 36.6 + - + +
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Residues in contact with HIS 371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367B SER* 3.0 41.9 + - - +
368B LYS* 3.9 5.2 - - - +
370B TYR* 1.3 99.7 - + - +
372B LEU* 1.3 62.3 + - + +
374B ASN* 3.2 11.1 + - + +
375B GLU* 2.9 28.3 + - - +
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Residues in contact with LEU 372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369A ASN* 3.9 40.4 - - + +
372A LEU* 4.0 13.2 - - + -
373A GLU* 3.9 31.9 - - + +
376A VAL* 4.2 16.4 - - + +
368B LYS* 2.8 29.6 + - + +
369B ASN 3.8 3.8 - - - +
371B HIS* 1.3 73.5 - - + +
373B GLU* 1.3 62.5 + - - +
375B GLU* 3.2 7.1 + - + +
376B VAL* 3.0 28.5 + - - +
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Residues in contact with GLU 373 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372A LEU* 3.9 24.4 - - + +
369B ASN* 2.8 39.9 + - - +
370B TYR* 3.7 8.6 - - + +
371B HIS 3.3 0.2 - - - -
372B LEU* 1.3 76.7 - - - +
374B ASN* 1.3 63.0 + - - +
376B VAL* 3.5 8.2 + - - +
377B ALA* 3.0 23.7 + - - +
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Residues in contact with ASN 374 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B TYR* 3.0 24.7 + - + +
371B HIS* 3.3 18.1 - - - +
373B GLU* 1.3 77.2 - - - +
375B GLU* 1.3 61.7 + - - +
377B ALA* 3.3 8.0 + - - +
378B ARG* 3.0 31.2 + - - +
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Residues in contact with GLU 375 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A VAL* 4.0 17.0 - - + -
380A LYS* 3.8 17.0 + - - -
371B HIS 2.9 15.5 + - - +
372B LEU* 3.2 8.9 + - + +
374B ASN* 1.3 80.1 - - - +
376B VAL* 1.3 57.8 + - - +
378B ARG* 2.7 49.0 + - - +
379B LEU* 2.9 44.9 + - + +
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Residues in contact with VAL 376 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372A LEU* 4.1 26.2 - - + +
375A GLU* 3.7 21.5 - - + +
376A VAL* 3.6 21.8 - - + +
379A LEU* 3.9 8.9 - - + +
372B LEU 3.0 18.1 + - - +
373B GLU* 3.6 9.9 - - - +
375B GLU* 1.3 72.1 - - - +
377B ALA* 1.3 60.6 + - - +
379B LEU* 3.3 1.6 + - - -
380B LYS* 2.9 60.7 + - - +
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Residues in contact with ALA 377 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373B GLU 3.0 14.7 + - - +
374B ASN* 3.3 10.5 + - - +
376B VAL* 1.3 76.6 - - - +
378B ARG* 1.3 62.7 + - - +
380B LYS* 3.3 10.0 + - - +
381B LYS* 3.1 22.7 + - - +
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Residues in contact with ARG 378 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380A LYS* 5.0 3.6 - - - +
374B ASN* 3.0 19.0 + - - +
375B GLU* 2.7 48.3 + - - +
377B ALA* 1.3 76.8 - - - +
379B LEU* 1.3 79.6 + - - +
381B LYS* 3.3 8.7 + - - +
382B LEU* 3.0 43.6 + - + +
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Residues in contact with LEU 379 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A VAL* 3.9 26.7 - - + +
379A LEU* 3.8 19.3 - - + -
380A LYS* 3.8 32.8 - - + -
383A VAL* 4.1 21.3 - - + +
375B GLU* 2.9 30.9 + - + +
376B VAL 3.9 2.7 - - - +
378B ARG* 1.3 100.6 - - - +
380B LYS* 1.3 66.8 + - - +
382B LEU* 3.1 9.0 + - + +
383B VAL* 2.9 29.0 + - - +
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Residues in contact with LYS 380 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A GLU* 3.3 25.5 + - - -
379A LEU* 4.0 16.8 - - + -
376B VAL* 2.9 37.5 + - + +
377B ALA* 3.8 7.9 - - - +
379B LEU* 1.3 77.3 - - - +
381B LYS* 1.3 58.0 + - - +
383B VAL* 3.4 6.9 + - - +
384B GLY* 3.0 24.6 + - - -
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Residues in contact with LYS 381 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377B ALA 3.1 12.4 + - - +
378B ARG* 3.5 11.0 - - - +
380B LYS* 1.3 79.3 - - - +
382B LEU* 1.3 56.0 + - - +
384B GLY* 3.3 2.2 + - - -
385B ASP* 2.6 67.6 + - - +
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Residues in contact with LEU 382 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383A VAL* 3.9 30.3 - - + -
387A LEU* 6.0 1.3 - - + -
378B ARG* 3.0 35.5 + - + +
379B LEU* 3.1 12.3 + - + +
381B LYS* 1.3 76.4 - - - +
383B VAL* 1.3 58.9 + - - +
385B ASP* 3.3 9.7 + - + +
386B LEU* 2.8 55.0 + - + +
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Residues in contact with VAL 383 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A LEU* 4.0 25.8 - - + +
382A LEU* 4.4 19.1 - - + -
383A VAL* 3.7 22.0 - - + +
386A LEU* 3.9 14.7 - - + +
379B LEU 2.9 20.3 + - - +
380B LYS* 3.7 6.3 - - - +
382B LEU* 1.3 77.0 - - - +
384B GLY* 1.3 57.8 + - - +
386B LEU* 3.3 2.0 + - - +
387B LEU* 2.8 46.6 + - + +
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Residues in contact with GLY 384 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380B LYS 3.0 15.3 + - - -
381B LYS* 3.8 3.4 - - - -
383B VAL* 1.3 76.4 - - - +
385B ASP* 1.3 59.3 + - - +
387B LEU* 3.2 9.5 + - - +
388B ASN* 2.9 36.3 + - - +
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Residues in contact with ASP 385 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381B LYS* 2.6 57.7 + - - +
382B LEU* 3.7 11.4 - - + +
384B GLY* 1.3 76.3 - - - +
386B LEU* 1.3 60.9 + - + +
388B ASN* 3.1 12.7 + - - +
389B VAL* 2.8 34.0 + - + +
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Residues in contact with LEU 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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383A VAL* 4.1 11.2 - - + +
386A LEU* 3.9 34.4 - - + +
387A LEU* 3.8 37.2 - - + -
390A LYS* 4.3 18.8 - - + -
382B LEU* 2.8 46.5 + - + +
383B VAL 3.9 2.7 - - - +
385B ASP* 1.3 74.8 - - + +
387B LEU* 1.3 59.3 + - - +
389B VAL* 3.3 11.8 + - + +
390B LYS* 2.9 28.6 + - - +
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Residues in contact with LEU 387 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A LEU* 3.9 25.8 - - + -
383B VAL* 2.8 36.4 + - + +
384B GLY* 3.2 8.0 + - - +
386B LEU* 1.3 79.2 - - - +
388B ASN* 1.3 64.4 + - - +
390B LYS* 3.5 13.9 + - + +
391B MET* 3.1 25.4 + - + +
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Residues in contact with ASN 388 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384B GLY 2.9 20.1 + - - +
385B ASP* 3.4 14.8 + - - +
387B LEU* 1.3 80.2 - - - +
389B VAL* 1.3 61.4 + - + +
391B MET* 3.2 22.8 + - - +
392B ALA* 3.1 22.3 + - - +
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Residues in contact with VAL 389 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
390A LYS* 3.8 29.4 - - + -
385B ASP* 2.8 19.2 + - + +
386B LEU* 3.5 17.0 - - + +
388B ASN* 1.3 72.7 - - + +
390B LYS* 1.3 66.8 + - - +
392B ALA* 3.1 7.3 + - - +
393B LEU* 2.9 44.8 + - + +
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Residues in contact with LYS 390 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386A LEU* 4.4 16.6 - - + -
389A VAL* 4.1 31.2 - - + -
390A LYS* 6.3 2.0 - - + -
393A LEU* 4.3 10.3 - - + -
386B LEU 2.9 19.6 + - - +
387B LEU* 3.7 14.8 - - + +
388B ASN 3.3 0.2 - - - -
389B VAL* 1.3 74.8 - - - +
391B MET* 1.3 58.4 + - - +
393B LEU* 3.3 2.0 + - - +
394B ASP* 2.9 58.3 + - - +
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Residues in contact with MET 391 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387B LEU* 3.1 14.0 + - + +
388B ASN* 3.4 27.8 - - - +
389B VAL 3.2 0.2 - - - -
390B LYS* 1.3 76.4 - - - +
392B ALA* 1.3 63.7 + - - +
394B ASP* 3.4 8.5 + - - +
395B ILE* 3.1 39.2 + - + +
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Residues in contact with ALA 392 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ASN 3.1 12.6 + - - +
389B VAL* 3.1 9.4 + - - +
391B MET* 1.3 78.4 - - + +
393B LEU* 1.3 66.8 + - + +
395B ILE* 3.3 11.2 + - - +
396B GLU* 3.1 29.1 + - + +
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Residues in contact with LEU 393 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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390A LYS* 3.8 13.7 - - + -
393A LEU* 3.9 25.4 - - + -
394A ASP* 3.4 24.7 - - - +
397A ILE* 3.4 25.8 - - + -
389B VAL* 2.9 40.0 + - + +
390B LYS* 3.8 3.6 - - - +
392B ALA* 1.3 74.4 - - + +
394B ASP* 1.3 61.3 + - - +
396B GLU* 3.1 16.2 + - - +
397B ILE* 2.8 34.8 + - - +
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Residues in contact with ASP 394 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A LEU* 3.6 24.8 - - - +
390B LYS* 2.9 52.3 + - - +
391B MET* 3.6 8.6 - - - +
393B LEU* 1.3 77.2 - - - +
395B ILE* 1.3 59.7 + - + +
397B ILE* 3.4 6.2 + - - +
398B ALA* 2.9 30.3 + - - +
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Residues in contact with ILE 395 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391B MET* 3.1 32.8 + - + +
392B ALA* 3.6 11.2 - - - +
393B LEU 3.1 0.4 - - - -
394B ASP* 1.3 81.4 - - + +
396B GLU* 1.3 64.7 + - + +
398B ALA* 3.2 7.9 + - - +
399B THR* 3.0 31.2 + - - +
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Residues in contact with GLU 396 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A ILE* 3.9 10.5 - - + +
401A ARG* 2.8 32.5 + - - +
392B ALA* 3.1 16.9 + - + +
393B LEU* 3.1 29.8 + - - +
395B ILE* 1.3 78.1 - - + +
397B ILE* 1.3 63.3 + - - +
399B THR* 3.2 8.1 + - - -
400B TYR* 3.1 32.3 + - + -
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Residues in contact with ILE 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393A LEU* 3.4 50.3 - - + +
396A GLU* 3.6 37.2 - - + +
397A ILE* 3.3 20.9 - - + -
400A TYR* 4.6 2.2 - - + -
393B LEU 2.8 15.8 + - - +
394B ASP* 3.8 4.9 - - - +
396B GLU* 1.3 73.4 - - - +
398B ALA* 1.3 68.1 + - - +
399B THR 3.2 0.2 + - - -
400B TYR* 3.2 7.0 + - - +
401B ARG* 2.8 36.5 + - + +
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Residues in contact with ALA 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B ASP 2.9 18.5 + - - +
395B ILE* 3.6 7.6 - - - +
397B ILE* 1.3 78.7 - - - +
399B THR* 1.3 62.8 + - - +
401B ARG* 4.1 5.1 - - - +
402B LYS* 3.0 26.5 + - - +
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Residues in contact with THR 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B ILE* 3.0 20.2 + - - +
396B GLU* 3.4 12.8 - - - -
397B ILE 3.1 0.2 - - - -
398B ALA* 1.3 79.1 - - - +
400B TYR* 1.3 66.2 + - + +
402B LYS* 3.8 4.1 - - - +
403B LEU* 3.0 40.1 + - + +
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Residues in contact with TYR 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397A ILE* 4.4 12.6 - - + -
400A TYR* 3.7 44.9 - + + -
401A ARG* 3.1 39.0 + - + +
404A LEU* 4.0 18.8 - - + +
405A GLU* 2.4 30.1 + - - -
396B GLU* 3.1 25.8 + - + -
397B ILE* 3.2 6.7 + - - +
399B THR* 1.3 84.5 - - + +
401B ARG* 1.3 58.7 + - - +
403B LEU* 3.2 10.3 + - + +
404B LEU* 2.8 34.7 + - + +
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Residues in contact with ARG 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396A GLU* 3.7 17.6 + - - -
400A TYR* 3.9 17.0 + - + +
397B ILE* 2.8 34.9 + - + +
398B ALA* 4.1 5.2 - - - +
400B TYR* 1.3 71.9 - - - +
402B LYS* 1.3 58.8 + - - +
404B LEU* 3.3 7.5 + - + +
405B GLU* 2.8 63.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 402 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398B ALA 3.0 19.1 + - - +
399B THR* 3.8 4.7 - - - +
401B ARG* 1.3 76.3 - - - +
403B LEU* 1.3 67.4 + - + +
405B GLU* 3.3 12.9 + - + +
406B GLY 3.3 21.8 + - - -
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Residues in contact with LEU 403 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404A LEU* 6.3 2.2 - - + -
399B THR* 3.0 36.6 + - + +
400B TYR* 3.6 10.8 - - + +
402B LYS* 1.3 78.1 - - + +
404B LEU* 1.3 65.4 + - + +
405B GLU 3.3 0.2 + - - -
406B GLY* 3.5 13.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 404 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400A TYR* 3.6 39.7 - - + +
404A LEU* 3.9 35.4 - - + -
400B TYR 2.8 24.4 + - - +
401B ARG* 3.8 7.0 - - + +
403B LEU* 1.3 73.1 - - - +
405B GLU* 1.3 65.5 + - + +
406B GLY* 4.3 0.9 - - - -
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Residues in contact with GLU 405 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401B ARG* 2.8 58.6 + - - +
402B LYS* 3.7 11.2 - - + +
403B LEU 3.2 0.4 - - - -
404B LEU* 1.3 79.8 - - + +
406B GLY* 1.3 57.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il