Contacts of the helix formed by residues 475 - 539 (chain B) in PDB entry 1HCI
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 475 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B ARG* 5.0 8.5 + - - -
473B TYR* 3.1 28.9 + - + +
474B HIS* 1.3 92.1 + - + +
476B ALA* 1.3 63.7 + - - +
477B VAL* 2.8 9.8 + - - +
478B ASN* 2.7 44.3 + - - +
479B VAL* 3.2 12.9 + - - +
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Residues in contact with ALA 476 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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468B LEU 4.5 0.7 - - - +
469B ASN* 3.2 33.2 - - - +
472B ASP* 5.2 1.1 - - - -
473B TYR* 3.1 27.9 + - + +
474B HIS 3.4 1.2 - - - -
475B ASP* 1.3 75.6 - - - +
477B VAL* 1.3 64.6 + - + +
479B VAL* 3.6 10.9 - - - +
480B ASN* 2.9 32.2 + - - -
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Residues in contact with VAL 477 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474B HIS 4.5 8.7 - - - +
475B ASP* 2.8 6.5 + - - -
476B ALA* 1.3 81.1 - - + +
478B ASN* 1.3 70.7 + - - +
480B ASN* 3.2 6.1 + - - +
481B ASP* 3.1 18.8 + - - +
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Residues in contact with ASN 478 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B ARG* 4.8 10.7 + - - +
475B ASP* 2.7 36.0 + - - +
477B VAL* 1.3 79.6 - - - +
479B VAL* 1.3 65.2 + - - +
481B ASP* 3.6 6.8 - - - +
482B ARG* 3.0 25.1 + - - +
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Residues in contact with VAL 479 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406B PHE* 3.6 18.0 - - + -
407B ARG* 3.8 20.2 - - - +
465B ALA* 3.8 32.5 - - + +
468B LEU* 4.2 10.8 - - + -
473B TYR* 3.5 27.6 - - + -
475B ASP* 3.2 18.1 + - + +
476B ALA* 3.6 12.3 - - + +
478B ASN* 1.3 76.4 - - - +
480B ASN* 1.3 63.5 + - - +
482B ARG 3.3 0.3 + - - -
483B CYS* 2.8 32.1 + - - +
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Residues in contact with ASN 480 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465B ALA* 4.4 12.0 - - - +
466B GLN* 5.7 0.2 - - - -
469B ASN* 2.7 39.7 + - - +
476B ALA* 2.9 24.9 + - - +
477B VAL* 3.5 5.9 - - - +
479B VAL* 1.3 81.5 - - - +
481B ASP* 1.3 56.0 + - - +
483B CYS* 3.8 5.4 - - - +
484B GLN* 3.0 28.9 + - - +
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Residues in contact with ASP 481 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477B VAL 3.1 11.8 + - - +
478B ASN* 3.6 11.0 - - - +
479B VAL 3.1 0.6 - - - -
480B ASN* 1.3 76.2 - - - +
482B ARG* 1.3 59.5 + - - +
484B GLN* 2.8 27.7 + - - +
485B LYS* 2.9 45.3 + - - +
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Residues in contact with ARG 482 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406B PHE* 4.0 10.1 - - + -
407B ARG* 3.2 53.5 + - - +
410B ALA* 3.8 10.1 - - - +
411B SER* 3.0 34.6 + - - +
414B GLU* 2.7 41.0 + - - +
478B ASN 3.0 17.9 + - - +
479B VAL 3.8 2.9 - - - +
481B ASP* 1.3 77.2 + - - +
483B CYS* 1.3 62.8 + - - +
485B LYS* 3.6 12.7 + - + +
486B ILE* 3.3 25.8 + - + +
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Residues in contact with CYS 483 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406B PHE* 4.2 9.1 - - + -
461B ILE* 4.0 9.9 - - - -
462B ALA* 3.8 31.2 - - - -
465B ALA* 4.1 15.0 - - + -
479B VAL 2.8 19.0 + - - +
480B ASN* 3.8 5.6 - - - +
482B ARG* 1.3 75.8 - - - +
484B GLN* 1.3 65.3 - - - +
486B ILE* 3.2 9.1 + - - +
487B CYS* 2.9 31.8 + - - -
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Residues in contact with GLN 484 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480B ASN 3.0 16.1 + - - +
481B ASP* 2.8 16.2 + - - +
483B CYS* 1.3 74.0 - - - +
485B LYS* 1.3 67.1 + - + +
487B CYS* 3.2 10.1 + - - +
488B ASP* 2.8 57.8 + - - +
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Residues in contact with LYS 485 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481B ASP* 2.9 41.2 + - - +
482B ARG* 3.7 11.9 - - + +
484B GLN* 1.3 74.9 - - + +
486B ILE* 1.3 65.7 + - + +
488B ASP* 3.0 9.9 + - - +
489B GLN* 2.8 25.7 + - - +
492B ARG* 5.5 0.3 + - - -
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Residues in contact with ILE 486 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406B PHE* 5.9 0.2 - - + -
410B ALA* 4.1 9.2 - - + +
413B HIS* 3.8 27.8 - - + +
414B GLU* 3.8 36.6 - - + +
458B VAL* 4.5 15.9 - - + -
461B ILE* 4.0 34.5 - - + -
482B ARG* 3.3 15.6 + - + +
483B CYS* 3.2 9.7 + - - +
485B LYS* 1.3 81.4 - - + +
487B CYS* 1.3 59.5 + - - +
489B GLN* 3.6 11.2 + - - +
490B TRP* 2.9 27.0 + - - +
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Residues in contact with CYS 487 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458B VAL* 4.4 17.9 - - - -
461B ILE* 6.3 0.7 - - - -
462B ALA* 4.7 12.3 - - - -
483B CYS* 2.9 33.8 + - - +
484B GLN* 3.8 11.4 - - - +
486B ILE* 1.3 74.6 - - - +
488B ASP* 1.3 67.7 + - - +
490B TRP* 3.4 8.4 + - - +
491B ASP* 3.2 28.8 + - - +
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Residues in contact with ASP 488 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484B GLN* 2.8 43.8 + - - +
485B LYS* 3.4 10.9 - - - +
487B CYS* 1.3 76.7 - - - +
489B GLN* 1.3 65.0 + - - +
491B ASP* 3.1 12.4 + - - +
492B ARG* 3.0 33.2 + - - +
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Residues in contact with GLN 489 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413B HIS* 4.1 18.2 + - - -
414B GLU* 5.6 1.2 - - - +
417B ALA* 3.3 37.7 - - - +
421B GLU* 3.4 25.8 - - - +
485B LYS 2.8 15.9 + - - +
486B ILE* 3.6 9.9 + - - +
488B ASP* 1.3 77.3 - - - +
490B TRP* 1.3 52.3 + - - +
492B ARG* 3.0 19.6 + - - +
493B LEU* 2.6 49.4 + - + +
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Residues in contact with TRP 490 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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413B HIS* 3.8 16.2 - + - -
416B TRP* 3.6 30.3 - + - -
451B LEU* 3.4 44.1 - - + +
454B HIS* 4.0 6.3 - - + -
455B GLN* 3.0 54.2 + - + +
458B VAL* 3.6 30.0 - - + +
486B ILE 2.9 17.4 + - - +
487B CYS* 3.5 10.3 - - - +
488B ASP 3.3 0.2 - - - -
489B GLN* 1.3 76.0 - - - +
491B ASP* 1.3 68.1 + - - +
493B LEU* 3.3 10.1 - - + +
494B GLY* 2.9 24.3 + - - -
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Residues in contact with ASP 491 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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487B CYS* 3.3 15.8 - - - +
488B ASP* 3.1 11.7 + - - +
490B TRP* 1.3 84.4 - - - +
492B ARG* 1.3 66.7 + - - +
493B LEU 3.1 1.1 - - - -
494B GLY* 3.0 12.3 + - - -
495B THR* 3.1 17.0 + - - +
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Residues in contact with ARG 492 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421B GLU* 2.9 38.2 + - - +
488B ASP* 3.0 29.3 + - - +
489B GLN* 3.5 19.0 - - - +
491B ASP* 1.3 76.7 - - - +
493B LEU* 1.3 53.2 + - - +
495B THR* 3.1 7.9 + - - -
496B LEU* 2.8 47.9 + - + +
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Residues in contact with LEU 493 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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416B TRP* 4.2 25.1 - - + -
417B ALA* 4.9 2.9 - - + -
420B LYS* 4.6 7.4 - - + -
421B GLU* 3.3 35.2 - - + +
424B LEU* 3.9 22.2 - - + +
447B PHE* 5.7 1.1 - - + -
451B LEU* 4.9 13.2 - - + -
489B GLN* 2.6 45.0 + - + +
490B TRP* 3.3 14.4 - - + +
492B ARG* 1.3 75.0 - - - +
494B GLY* 1.3 57.8 + - - +
496B LEU* 3.6 3.5 - - + +
497B THR* 2.9 33.8 + - - -
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Residues in contact with GLY 494 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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451B LEU* 5.5 9.4 - - - +
490B TRP 2.9 15.1 + - - -
491B ASP* 3.0 5.3 + - - -
493B LEU* 1.3 76.2 - - - +
495B THR* 1.3 61.5 + - - +
497B THR* 3.2 10.4 + - - +
498B GLN* 3.1 21.2 + - - +
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Residues in contact with THR 495 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491B ASP 3.1 10.4 + - - +
492B ARG* 3.1 15.4 + - - -
494B GLY* 1.3 72.7 - - - +
496B LEU* 1.3 65.0 + - - +
498B GLN* 2.8 21.1 + - + +
499B LYS* 2.8 27.7 + - - +
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Residues in contact with LEU 496 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421B GLU* 3.8 39.7 - - + +
424B LEU* 4.1 19.0 - - + +
425B LEU* 3.6 35.0 - - + -
492B ARG* 2.8 29.2 + - + +
493B LEU* 3.6 6.3 - - - +
495B THR* 1.3 78.8 + - - +
497B THR* 1.3 60.9 + - - +
499B LYS* 3.4 25.0 + - + +
500B ARG* 3.5 15.2 + - - +
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Residues in contact with THR 497 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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424B LEU* 3.3 12.9 - - - +
444B HIS* 3.2 25.9 + - + +
447B PHE* 3.2 29.7 - - + -
448B GLU* 3.9 29.4 - - + +
451B LEU* 4.7 9.7 - - + +
493B LEU* 2.9 19.9 + - - +
494B GLY* 3.3 8.1 - - - +
495B THR 3.0 0.2 - - - -
496B LEU* 1.3 79.6 - - - +
498B GLN* 1.3 64.2 + - + +
500B ARG* 3.6 1.0 - - - +
501B ARG* 3.4 4.5 + - - +
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Residues in contact with GLN 498 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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448B GLU* 3.8 22.2 + - - -
494B GLY 3.1 11.6 + - - +
495B THR* 2.8 13.9 + - + +
497B THR* 1.3 80.5 + - + +
499B LYS* 1.3 69.0 + - - +
501B ARG* 3.5 19.4 + - - +
502B GLU* 3.2 37.6 + - - +
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Residues in contact with LYS 499 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495B THR* 2.8 28.5 + - - +
496B LEU* 3.7 19.9 - - + +
498B GLN* 1.3 75.9 - - + +
500B ARG* 1.3 65.5 + - + +
502B GLU* 2.8 28.0 + - - +
503B ALA* 2.9 14.2 + - - +
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Residues in contact with ARG 500 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423B ILE* 5.1 12.6 + - - +
424B LEU* 3.3 40.7 + - + +
426B GLN 4.0 11.5 + - - -
428B ASP* 3.1 35.4 + - - -
429B TYR* 4.2 13.4 - - - -
440B LEU* 4.3 17.2 + - - +
443B LYS* 6.3 0.4 - - - +
444B HIS* 3.4 30.3 + - + +
496B LEU 3.5 4.6 + - - +
497B THR 3.6 3.1 - - - +
499B LYS* 1.3 78.7 - - + +
501B ARG* 1.3 65.7 + - - +
503B ALA* 3.0 6.6 + - - +
504B LEU* 2.8 52.7 + - - +
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Residues in contact with ARG 501 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441B LEU* 3.9 33.3 + - - +
444B HIS* 3.6 13.0 + - - +
445B GLU* 4.2 15.8 + - - +
448B GLU* 3.0 43.4 + - - +
497B THR 3.4 3.8 + - - -
498B GLN* 3.8 28.9 - - - +
499B LYS 3.3 0.6 - - - -
500B ARG* 1.3 77.0 - - - +
502B GLU* 1.3 54.8 + - + +
504B LEU* 3.5 4.2 + - - +
505B GLU* 2.6 89.0 + - - +
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Residues in contact with GLU 502 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498B GLN* 3.2 31.0 + - - +
499B LYS* 2.8 20.7 + - - +
501B ARG* 1.3 77.3 - - + +
503B ALA* 1.3 55.7 + - - +
505B GLU* 3.1 11.7 + - - +
506B ARG* 2.7 37.8 + - - +
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Residues in contact with ALA 503 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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429B TYR* 3.2 40.1 - - + +
499B LYS 2.9 11.7 + - - +
500B ARG* 3.6 9.4 - - - +
502B GLU* 1.3 74.5 - - - +
504B LEU* 1.3 54.6 + - - +
506B ARG* 3.1 14.0 + - - +
507B MET* 2.7 36.4 + - - +
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Residues in contact with LEU 504 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429B TYR* 3.5 38.8 - - + -
437B VAL* 3.7 10.4 - - + +
440B LEU* 3.9 20.4 - - + +
441B LEU* 3.2 47.5 - - + +
444B HIS* 4.0 9.4 - - + -
500B ARG* 2.8 47.9 + - - +
503B ALA* 1.3 73.7 - - - +
505B GLU* 1.3 62.2 + - - +
507B MET* 3.4 2.9 + - - -
508B GLU* 3.0 24.9 + - - +
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Residues in contact with GLU 505 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B LEU* 4.2 9.6 - - + -
501B ARG* 2.6 70.3 + - - +
502B GLU* 3.6 9.8 - - - +
504B LEU* 1.3 74.1 - - - +
506B ARG* 1.3 61.0 + - - +
508B GLU* 3.7 13.3 + - - +
509B LYS* 3.2 19.9 + - - +
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Residues in contact with ARG 506 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429B TYR* 6.1 1.8 - - - -
502B GLU 2.7 21.1 + - - +
503B ALA* 3.4 11.4 - - - +
505B GLU* 1.3 72.2 - - - +
507B MET* 1.3 71.7 + - - +
509B LYS* 3.0 25.0 + - + +
510B LEU* 3.1 26.0 + - + +
589B TYR* 3.3 38.2 - - - +
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Residues in contact with MET 507 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429B TYR* 3.4 33.2 - - + +
430B GLU* 2.8 34.3 - - - +
432B ALA 4.5 3.8 - - - +
437B VAL* 3.7 17.3 - - + -
503B ALA 2.7 19.7 + - - +
504B LEU 3.8 4.7 - - - +
506B ARG* 1.3 79.5 - - - +
508B GLU* 1.3 61.4 + - - +
510B LEU* 3.3 13.5 + - - +
511B LEU* 3.1 35.0 + - + +
591B ILE* 4.3 27.6 - - + -
593B ILE* 5.1 0.2 - - + -
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Residues in contact with GLU 508 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434B LEU* 3.8 9.7 - - + +
437B VAL* 3.9 14.2 - - + +
438B ARG* 2.7 42.4 + - - +
441B LEU* 3.4 21.7 - - + +
504B LEU 3.0 17.5 + - - +
505B GLU* 3.8 10.3 - - - +
506B ARG 3.2 0.2 - - - -
507B MET* 1.3 75.4 - - - +
509B LYS* 1.3 64.6 + - - +
511B LEU* 4.8 0.4 - - - -
512B GLU* 2.8 43.7 + - - +
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Residues in contact with LYS 509 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
505B GLU 3.2 11.3 + - - +
506B ARG* 3.0 18.3 + - + +
508B GLU* 1.3 79.9 - - - +
510B LEU* 1.3 95.8 + - + +
512B GLU* 3.3 11.1 + - - +
513B THR* 3.1 25.5 + - - +
589B TYR* 3.7 14.1 + - - -
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Residues in contact with LEU 510 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
506B ARG* 3.1 27.3 + - + +
507B MET* 3.3 14.6 + - - +
509B LYS* 1.3 112.3 - - + +
511B LEU* 1.3 55.9 + - - +
513B THR* 2.7 30.0 + - - -
514B ILE* 2.9 20.2 + - + +
585B VAL* 6.2 0.9 - - + -
589B TYR* 3.4 56.8 - - + -
591B ILE* 4.5 20.4 - - + -
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Residues in contact with LEU 511 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
432B ALA 3.2 18.2 - - - +
433B SER* 3.3 4.9 - - - +
434B LEU* 3.2 43.5 - - + +
437B VAL* 4.1 13.7 - - + -
507B MET* 3.1 21.6 + - + +
508B GLU 4.0 2.0 - - - +
510B LEU* 1.3 77.4 - - - +
512B GLU* 1.3 57.4 + - - +
514B ILE* 3.9 8.4 - - + +
515B ASP* 2.9 31.5 + - - +
591B ILE* 3.7 27.4 - - + -
593B ILE* 4.1 22.2 - - + -
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Residues in contact with GLU 512 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434B LEU* 4.0 15.6 - - + +
438B ARG* 3.5 21.2 + - - +
508B GLU* 2.8 41.8 + - - +
509B LYS* 3.4 9.5 + - - +
511B LEU* 1.3 77.0 - - - +
513B THR* 1.3 59.0 + - - +
515B ASP* 3.5 2.4 - - - +
516B GLN* 3.1 31.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 513 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509B LYS* 3.1 16.0 + - - +
510B LEU* 2.7 17.9 + - - -
512B GLU* 1.3 72.1 - - - +
514B ILE* 1.3 67.7 + - - +
516B GLN* 3.1 8.8 + - - +
517B LEU* 3.1 38.0 + - + +
581B GLU* 4.3 10.5 - - - +
585B VAL* 4.7 13.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 514 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
510B LEU* 2.9 26.8 + - + +
511B LEU* 3.9 9.4 - - + +
513B THR* 1.3 73.8 - - - +
515B ASP* 1.3 57.4 + - - +
517B LEU* 3.4 8.4 + - - +
518B HIS* 3.0 51.6 + - + -
582B VAL* 4.0 13.7 - - + -
585B VAL* 3.5 22.2 - - + -
586B ILE* 3.4 29.2 - - + -
589B TYR* 6.4 0.2 - - + -
591B ILE* 3.6 27.4 - - + -
593B ILE* 5.2 7.2 - - + -
----------------------------------------------------------
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Residues in contact with ASP 515 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434B LEU* 4.6 17.7 - - + +
511B LEU 2.9 19.9 + - - +
512B GLU* 3.5 6.7 - - - +
514B ILE* 1.3 75.2 - - - +
516B GLN* 1.3 74.2 + - - +
518B HIS* 3.2 8.7 + - - +
519B LEU* 2.9 29.6 + - - +
598B PRO* 4.9 4.2 - - - +
599B TYR* 2.8 37.0 + - - -
----------------------------------------------------------
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Residues in contact with GLN 516 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512B GLU* 3.1 18.8 + - - +
513B THR* 3.4 12.1 - - - +
515B ASP* 1.3 83.8 + - - +
517B LEU* 1.3 70.5 + - + +
519B LEU* 3.2 17.7 + - - +
520B GLU* 2.9 28.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 517 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513B THR* 3.1 27.1 + - + +
514B ILE* 3.6 7.4 - - - +
516B GLN* 1.3 85.6 - - + +
518B HIS* 1.3 63.9 + - - +
520B GLU* 2.9 15.2 + - - +
521B PHE* 2.8 23.6 + - - +
578B ILE* 3.7 13.1 - - + +
581B GLU* 3.4 35.2 - - + +
582B VAL* 3.1 52.0 - - + +
585B VAL* 4.7 2.2 - - + -
----------------------------------------------------------
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Residues in contact with HIS 518 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514B ILE* 3.0 41.0 + - + +
515B ASP* 3.5 11.3 - - - +
517B LEU* 1.3 74.9 - - - +
519B LEU* 1.3 64.1 + - - +
521B PHE* 4.4 0.4 - - - -
522B ALA* 2.9 19.9 + - - +
579B GLN* 5.2 2.9 - - - -
582B VAL* 3.5 20.3 - - + +
593B ILE* 4.9 8.1 - - + -
594B SER 4.8 2.5 - - - -
595B SER* 2.8 29.9 + - - -
596B SER 3.9 9.4 + - - -
597B ASN* 2.9 49.7 + - - +
598B PRO* 3.9 13.9 - - + +
599B TYR* 4.1 3.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 519 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442A ARG* 3.4 40.8 - - - +
515B ASP* 2.9 17.3 + - - +
516B GLN* 3.3 26.0 - - - +
518B HIS* 1.3 77.3 - - - +
520B GLU* 1.3 63.8 + - - +
522B ALA* 3.0 5.1 + - - +
523B LYS* 2.9 24.5 + - + +
599B TYR* 3.3 31.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 520 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516B GLN* 2.9 19.2 + - + +
517B LEU* 3.4 16.4 - - - +
519B LEU* 1.3 71.2 - - - +
521B PHE* 1.3 66.6 + - - +
523B LYS* 3.1 20.1 + - + +
524B ARG* 3.1 32.7 + - - +
578B ILE* 3.1 29.9 - - + +
----------------------------------------------------------
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Residues in contact with PHE 521 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
517B LEU 2.8 15.4 + - - +
518B HIS* 3.4 7.6 - - - +
520B GLU* 1.3 73.7 - - - +
522B ALA* 1.3 63.2 + - - +
524B ARG* 3.1 4.0 + - - +
525B ALA* 2.8 47.5 + - + +
575B ILE* 3.8 19.9 - - + +
578B ILE* 3.6 16.5 - - + +
579B GLN* 3.5 26.7 - - + +
582B VAL* 5.9 0.2 - - + -
597B ASN* 3.6 22.9 - - + +
600B SER* 4.2 6.7 - - - -
602B VAL 3.7 20.6 - - - -
603B THR* 5.1 0.2 - - - -
604B MET* 3.2 44.2 - - + -
607B LEU* 4.4 4.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 522 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442A ARG* 5.4 4.3 - - + -
518B HIS 2.9 13.1 + - - +
519B LEU 3.0 8.0 + - - +
521B PHE* 1.3 77.8 - - - +
523B LYS* 1.3 63.7 + - - +
524B ARG 3.0 1.0 + - - -
525B ALA* 4.8 0.2 - - - -
526B ALA* 3.3 23.9 + - - +
599B TYR* 3.5 25.6 - - + +
600B SER* 3.5 33.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 523 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442A ARG* 6.3 0.4 - - - +
519B LEU* 2.9 14.8 + - + +
520B GLU* 3.1 13.0 + - + +
522B ALA* 1.3 76.1 - - - +
524B ARG* 1.3 75.2 + - + +
526B ALA* 5.3 0.2 - - - -
527B PRO* 3.3 23.8 - - - +
----------------------------------------------------------
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Residues in contact with ARG 524 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520B GLU* 3.1 37.5 + - - +
521B PHE* 3.1 3.9 + - - +
522B ALA 3.0 0.6 - - - -
523B LYS* 1.3 100.9 - - + +
525B ALA* 1.3 63.3 + - - +
526B ALA 3.2 1.8 - - - -
527B PRO* 3.5 4.9 - - - +
528B PHE* 3.3 23.6 + - - +
571B GLU* 3.1 38.5 + - - +
574B SER* 2.8 33.3 + - - -
575B ILE* 3.4 14.8 - - + +
578B ILE* 3.8 15.5 - - - +
----------------------------------------------------------
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Residues in contact with ALA 525 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
521B PHE* 2.8 49.4 + - + +
522B ALA 4.4 1.6 - - - +
524B ARG* 1.3 70.3 - - - +
526B ALA* 1.3 56.1 + - - +
528B PHE* 3.6 2.1 - - - +
529B ASN* 2.7 37.9 + - - +
575B ILE* 3.9 9.3 - - + +
600B SER* 4.7 1.8 - - - +
602B VAL* 3.8 17.3 - - + -
607B LEU* 4.3 12.1 - - + +
----------------------------------------------------------
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Residues in contact with ALA 526 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446A ALA* 4.6 24.0 - - + -
449A SER* 5.8 4.3 - - - +
522B ALA 3.3 14.0 + - - +
523B LYS 4.8 0.4 - - - +
524B ARG 3.2 0.2 - - - -
525B ALA* 1.3 76.6 - - - +
527B PRO* 1.3 66.1 - - + +
529B ASN* 2.7 28.0 + - - +
530B ASN* 3.0 15.5 + - - +
600B SER* 5.5 1.3 + - - +
602B VAL* 5.0 3.5 - - - +
----------------------------------------------------------
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Residues in contact with PRO 527 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A SER* 5.6 2.9 - - - +
523B LYS* 3.3 30.5 - - - +
524B ARG* 3.5 8.3 - - - +
526B ALA* 1.3 96.2 - - + +
528B PHE* 1.3 60.4 + - - +
530B ASN* 3.1 13.9 + - + +
531B TRP* 3.1 21.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 528 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
524B ARG 3.3 17.6 + - - +
525B ALA 3.8 2.0 - - - +
526B ALA 3.1 0.8 - - - -
527B PRO* 1.3 80.1 - - - +
529B ASN* 1.3 62.5 + - - +
531B TRP* 3.5 21.5 + + + +
532B MET* 3.2 58.2 + - + +
568B ALA* 3.6 21.8 - - - -
571B GLU* 3.8 18.8 - - + -
572B ARG* 3.9 24.0 - - + -
575B ILE* 3.8 15.7 - - + -
607B LEU* 4.2 18.4 - - + -
611B TRP* 3.8 16.8 - + - -
----------------------------------------------------------
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Residues in contact with ASN 529 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450A ASP* 5.0 5.7 + - - +
525B ALA 2.7 18.7 + - - +
526B ALA* 2.7 15.0 + - - +
528B PHE* 1.3 71.0 - - - +
530B ASN* 1.3 69.3 + - - +
532B MET* 3.5 7.2 + - - +
533B GLU* 3.2 28.2 + - - +
602B VAL* 4.1 22.8 - - + +
607B LEU* 4.4 8.5 - - + +
610B LYS* 2.7 36.7 + - - +
----------------------------------------------------------
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Residues in contact with ASN 530 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A SER* 3.1 29.2 + - - +
450A ASP* 3.7 36.5 + - - +
453A ALA* 4.7 12.6 - - + +
526B ALA 3.0 14.4 + - - +
527B PRO* 3.1 13.6 + - + +
529B ASN* 1.3 83.2 - - - +
531B TRP* 1.3 52.6 + - - +
533B GLU* 3.3 6.1 + - - +
534B GLY* 2.8 32.2 + - - -
----------------------------------------------------------
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Residues in contact with TRP 531 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
527B PRO 3.1 11.7 + - - +
528B PHE* 3.6 20.6 - + + +
530B ASN* 1.3 74.8 - - - +
532B MET* 1.3 97.0 + - + +
534B GLY* 3.2 1.5 + - - -
535B ALA* 2.8 30.8 + - + +
561B PHE* 3.8 28.6 - + - -
564B THR* 4.2 13.7 + - - -
565B LEU* 3.9 17.0 - - + -
568B ALA* 3.7 27.8 - - + -
611B TRP* 3.7 20.2 - + - -
614B VAL* 4.4 9.4 - - + -
----------------------------------------------------------
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Residues in contact with MET 532 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
528B PHE* 3.2 48.3 + - + +
529B ASN* 4.0 7.2 - - - +
530B ASN 3.4 0.4 - - - -
531B TRP* 1.3 98.9 - - + +
533B GLU* 1.3 64.0 + - - +
535B ALA* 3.3 1.6 + - - +
536B MET* 2.9 30.8 + - - +
607B LEU* 3.2 33.2 - - + +
610B LYS* 3.4 20.6 - - + -
611B TRP* 3.3 36.6 - - - -
614B VAL* 4.2 5.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 533 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450A ASP* 5.4 6.7 - - - +
454A HIS* 5.3 16.5 - - + -
529B ASN* 3.2 24.7 + - - +
530B ASN* 3.6 7.4 - - - +
532B MET* 1.3 76.8 - - - +
534B GLY* 1.3 64.1 + - - +
536B MET* 3.3 13.0 + - - +
537B GLU* 3.2 23.7 + - - +
610B LYS* 2.9 38.2 + - - +
----------------------------------------------------------
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Residues in contact with GLY 534 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530B ASN 2.8 16.2 + - - -
531B TRP* 3.6 2.9 - - - -
533B GLU* 1.3 77.0 - - - +
535B ALA* 1.3 61.8 + - - +
537B GLU* 3.0 15.5 + - - +
538B ASP* 3.0 23.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 535 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
531B TRP* 2.8 25.3 + - + +
532B MET* 3.6 5.4 - - - +
534B GLY* 1.3 68.8 - - - +
536B MET* 1.3 68.4 + - - +
537B GLU 2.8 1.4 + - - -
538B ASP* 2.9 8.2 + - - +
539B LEU* 2.9 31.2 + - + +
561B PHE* 4.0 31.4 - - + -
614B VAL* 4.3 13.5 - - + -
----------------------------------------------------------
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Residues in contact with MET 536 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
532B MET 2.9 19.5 + - - +
533B GLU* 3.3 14.1 + - - +
535B ALA* 1.3 75.0 - - - +
537B GLU* 1.3 64.0 + - + +
539B LEU* 4.8 2.5 - - - -
540B GLN* 2.9 30.5 + - - +
610B LYS* 4.1 29.8 - - + +
613B LYS* 3.2 48.9 - - + +
614B VAL* 4.0 15.9 - - + +
617B LEU* 3.7 16.5 - - + +
----------------------------------------------------------
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Residues in contact with GLU 537 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409A LYS* 4.0 18.4 + - - +
412A THR* 4.4 7.1 + - - +
454A HIS* 4.3 7.3 + - - -
457A ARG* 3.0 49.6 + - - +
533B GLU 3.2 12.4 + - - +
534B GLY* 3.0 11.0 + - - +
535B ALA 2.8 1.6 + - - -
536B MET* 1.3 75.4 - - + +
538B ASP* 1.3 59.9 + - - +
540B GLN* 2.6 31.0 + - - +
541B ASP* 3.1 10.9 + - - -
----------------------------------------------------------
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Residues in contact with ASP 538 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
534B GLY* 3.4 16.1 - - - +
535B ALA* 2.9 10.3 + - - +
537B GLU* 1.3 75.9 - - - +
539B LEU* 1.3 63.6 + - + +
540B GLN 2.8 7.3 + - - -
541B ASP* 3.1 21.0 + - - +
561B PHE* 6.0 4.4 - - + -
621B ARG* 3.7 9.9 + - - -
----------------------------------------------------------
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Residues in contact with LEU 539 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535B ALA* 2.9 27.5 + - - +
538B ASP* 1.3 75.2 - - + +
540B GLN* 1.3 62.2 + - - +
558B HIS* 5.2 4.7 - - + -
561B PHE* 3.6 35.4 - - + -
614B VAL* 3.4 22.4 - - + +
617B LEU* 3.2 45.0 - - + +
618B VAL* 3.8 15.7 - - + +
620B ILE* 6.1 0.5 - - - +
621B ARG* 3.2 39.2 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il