Contacts of the helix formed by residues 792 - 835 (chain V) in PDB entry 1I84
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 792 (chain V).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
736V ILE* 3.3 32.1 - - + -
788V ARG* 3.1 17.7 - - - +
789V ASP* 3.6 9.0 - - - +
790V LEU 2.9 0.6 - - - -
791V LYS* 1.3 78.4 - - - +
793V THR* 1.3 66.7 + - - +
794V ASP* 3.4 5.2 - - - -
795V VAL* 3.3 14.2 - - + +
796V ILE* 2.9 40.2 + - + +
91W GLY* 4.8 9.9 - - - +
94W VAL* 4.7 15.0 - - + -
95W PHE* 3.4 28.3 - - + -
115W LEU* 3.4 31.2 - - + -
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Residues in contact with THR 793 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
789V ASP 3.2 14.1 + - - +
790V LEU* 2.5 37.2 + - + +
792V ILE* 1.3 70.9 - - - +
794V ASP* 1.3 55.5 + - - +
796V ILE* 2.8 12.9 + - - +
797V ILE* 2.6 40.4 + - + +
115W LEU* 4.5 8.1 - - + -
116W GLY* 3.9 24.7 - - - +
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Residues in contact with ASP 794 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790V LEU 4.3 6.7 - - - +
791V LYS 3.7 7.9 - - - +
792V ILE 3.4 7.1 - - - -
793V THR* 1.3 75.2 + - - +
795V VAL* 1.3 68.1 + - - +
797V ILE* 2.6 21.6 + - + +
798V ALA* 2.5 36.6 + - - +
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Residues in contact with VAL 795 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791V LYS 4.4 3.6 - - - +
792V ILE* 3.3 24.5 - - + +
794V ASP* 1.3 84.9 - - + +
796V ILE* 1.3 56.8 + - + +
798V ALA* 3.0 8.9 + - + +
799V PHE* 2.6 37.8 + - + +
87W ASP* 4.1 24.5 - - + +
88W TYR* 4.2 18.6 - - + +
90W GLU* 4.4 9.9 - - - +
91W GLY* 4.8 8.1 - - - -
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Residues in contact with ILE 796 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792V ILE* 2.9 44.8 + - + +
793V THR* 2.8 13.2 + - - +
795V VAL* 1.3 75.0 - - + +
797V ILE* 1.3 52.7 + - - +
799V PHE* 3.7 4.7 - - + +
800V GLN* 2.6 69.4 + - - +
91W GLY* 5.5 2.9 - - - +
92W LEU* 4.3 20.4 - - + -
95W PHE* 4.6 1.6 - - + -
111W VAL* 3.8 23.6 - - + -
112W LEU* 4.3 7.6 - - + -
115W LEU* 3.9 24.2 - - + +
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Residues in contact with ILE 797 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
793V THR* 2.6 24.9 + - + +
794V ASP* 2.6 19.0 + - + +
796V ILE* 1.3 73.2 - - - +
798V ALA* 1.3 68.6 + - + +
800V GLN* 3.2 8.7 + - - +
801V ALA* 3.2 17.5 + - - +
43W THR* 5.5 9.7 - - + -
116W GLY* 3.2 21.7 - - - -
117W GLU* 3.3 42.0 - - + +
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Residues in contact with ALA 798 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
794V ASP 2.5 14.7 + - - +
795V VAL* 3.1 14.4 - - + +
797V ILE* 1.3 77.1 - - + +
799V PHE* 1.3 65.0 + - - +
801V ALA* 3.1 21.3 - - - +
802V GLN 3.6 0.7 + - - -
43W THR* 6.0 3.6 - - - -
83W GLY* 5.2 4.7 - - - +
88W TYR* 3.2 27.2 + - + +
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Residues in contact with PHE 799 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
795V VAL* 2.6 19.3 + - + +
796V ILE* 3.7 5.4 - - - +
798V ALA* 1.3 71.4 - - - +
800V GLN* 1.3 69.1 + - - +
801V ALA 2.7 2.1 + - - -
802V GLN* 2.9 18.2 + - + +
803V CYS* 3.1 36.4 + - - -
88W TYR* 3.2 37.4 - + + +
92W LEU* 4.4 22.7 - - + -
108W ILE* 5.2 0.4 - - + -
112W LEU* 3.6 33.0 - - + -
127W LEU* 4.7 2.0 - - + -
143W LEU* 4.3 19.7 - - + -
144W VAL* 4.7 13.5 - - + -
147W VAL* 3.8 25.4 - - + -
148W LEU* 5.3 2.9 - - + -
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Residues in contact with GLN 800 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
796V ILE* 2.6 52.6 + - + +
797V ILE* 3.2 11.6 + - - +
799V PHE* 1.3 73.1 - - - +
801V ALA* 1.3 62.8 + - - +
803V CYS* 3.1 6.6 - - - +
804V ARG* 3.1 23.7 + - - +
112W LEU* 2.9 28.9 + - + +
115W LEU 2.7 28.0 + - - +
117W GLU* 3.1 31.3 + - + +
118W LYS 3.7 0.6 - - - +
119W MET* 3.5 31.3 - - + +
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Residues in contact with ALA 801 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
797V ILE 3.2 7.4 + - - +
798V ALA 3.1 13.6 + - - +
799V PHE 2.7 4.2 + - - -
800V GLN* 1.3 71.2 - - - +
802V GLN* 1.3 60.6 + - + +
803V CYS 2.9 1.1 - - - -
804V ARG* 2.7 37.7 + - - +
805V GLY* 2.8 9.9 + - - -
36W ARG* 5.0 1.9 + - - -
41W ASN* 4.2 13.9 - - - +
42W PRO 4.7 2.2 - - - +
43W THR* 4.1 31.2 - - + +
44W ASN 5.5 0.2 - - - +
117W GLU* 5.6 1.8 - - + +
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Residues in contact with GLN 802 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
798V ALA 3.8 2.9 - - - +
799V PHE* 2.9 9.6 + - + +
801V ALA* 1.3 73.4 - - + +
803V CYS* 1.3 53.0 + - - +
805V GLY* 3.4 1.7 - - - +
806V TYR* 2.7 36.8 + - - +
809V ARG* 5.5 0.2 + - - -
41W ASN* 3.8 26.4 + - + +
82W GLN* 3.0 38.2 + - - +
83W GLY 3.7 1.2 - - - +
88W TYR* 2.5 51.9 + - + +
147W VAL* 4.7 6.5 - - + +
148W LEU* 3.9 25.0 - - + +
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Residues in contact with CYS 803 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799V PHE* 3.1 56.2 + - - -
800V GLN 3.1 8.5 - - - +
801V ALA 2.9 0.2 - - - -
802V GLN* 1.3 72.6 - - - +
804V ARG* 1.3 53.6 + - - +
805V GLY 3.0 0.9 - - - -
806V TYR* 3.8 0.2 - - - +
807V LEU* 2.6 45.2 + - + +
119W MET* 3.2 23.8 - - + -
127W LEU* 3.9 17.5 - - + -
147W VAL* 4.0 12.7 - - + +
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Residues in contact with ARG 804 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
800V GLN* 3.1 19.4 + - - +
801V ALA* 2.7 17.3 + - - +
803V CYS* 1.3 76.3 - - - +
805V GLY* 1.3 58.3 + - - +
807V LEU* 3.7 8.4 - - - -
808V ALA* 2.8 31.4 + - - +
33W ASP* 5.3 0.2 - - - +
36W ARG* 4.0 27.8 - - - +
44W ASN* 3.3 32.8 + - - +
117W GLU* 2.6 37.2 + - - +
118W LYS 3.0 18.4 + - - -
119W MET* 3.9 9.1 - - - +
123W GLU* 3.3 30.0 + - - +
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Residues in contact with GLY 805 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
801V ALA 2.8 11.9 + - - -
802V GLN 3.4 4.0 - - - -
804V ARG* 1.3 74.2 - - - +
806V TYR* 1.3 55.8 + - - +
808V ALA* 2.6 24.9 + - - +
809V ARG* 3.0 26.1 + - - -
36W ARG* 3.3 23.7 - - - +
41W ASN* 4.1 7.4 - - - -
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Residues in contact with TYR 806 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802V GLN 2.7 18.9 + - - +
805V GLY* 1.3 68.7 - - - +
807V LEU* 1.3 60.4 + - - +
808V ALA 2.6 12.3 + - - -
809V ARG* 3.3 15.0 + - - +
810V LYS* 3.2 61.7 + - + +
127W LEU* 4.2 7.9 - - + -
146W MET* 3.0 57.5 - - + +
147W VAL* 3.1 46.2 - - + +
150W GLY* 3.8 13.5 - - - -
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Residues in contact with LEU 807 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
803V CYS* 2.6 27.1 + - + +
804V ARG* 4.0 5.4 - - - +
806V TYR* 1.3 83.1 - - + +
808V ALA* 1.3 57.6 + - - +
810V LYS* 4.5 3.0 - - - +
811V ALA* 3.8 18.0 + - + +
119W MET* 5.0 4.9 - - - -
123W GLU* 3.6 52.9 - - + +
126W GLN* 4.3 30.7 - - + +
127W LEU* 5.0 13.0 - - + +
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Residues in contact with ALA 808 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804V ARG 2.8 20.6 + - - +
805V GLY 2.6 12.4 + - - +
806V TYR 2.6 0.4 + - - -
807V LEU* 1.3 70.3 - - - +
809V ARG* 1.3 65.2 + - - +
810V LYS 2.7 6.7 + - - -
811V ALA* 2.9 14.4 + - - +
812V PHE* 3.1 14.3 + - - +
33W ASP* 4.2 22.0 - - + +
36W ARG* 4.0 17.0 - - + -
37W ALA* 5.6 0.7 - - - -
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Residues in contact with ARG 809 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802V GLN 5.5 0.2 + - - -
805V GLY* 3.0 30.8 - - - +
806V TYR* 3.5 14.9 - - - +
808V ALA* 1.3 74.0 - - - +
810V LYS* 1.3 59.5 + - + +
812V PHE* 3.2 12.0 - - + -
813V ALA* 3.2 23.7 + - - +
36W ARG* 3.0 25.1 + - - -
37W ALA* 4.2 21.5 - - - +
39W GLY* 3.7 24.5 + - - -
40W GLN 4.0 1.2 + - - -
41W ASN* 2.6 34.7 + - - +
147W VAL 5.6 2.6 + - - -
148W LEU 5.7 1.8 + - - -
150W GLY 4.9 15.4 + - - -
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Residues in contact with LYS 810 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806V TYR* 3.2 62.3 + - + +
807V LEU* 4.7 3.6 - - - +
808V ALA 2.7 5.7 + - - -
809V ARG* 1.3 75.4 - - + +
811V ALA* 1.3 61.4 + - - +
812V PHE 3.1 5.3 + - - -
813V ALA* 3.3 8.2 + - - +
814V LYS* 3.2 18.2 + - - +
150W GLY* 4.4 17.2 - - - -
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Residues in contact with ALA 811 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
807V LEU* 3.8 18.0 + - + +
808V ALA* 2.9 8.0 + - - +
810V LYS* 1.3 74.2 - - - +
812V PHE* 1.3 56.9 - - - +
814V LYS* 3.3 27.2 - - + +
815V ARG* 3.8 7.1 + - - +
126W GLN* 5.1 10.3 - - - +
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Residues in contact with PHE 812 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808V ALA 3.1 12.4 + - - +
809V ARG* 3.2 14.1 - - + -
810V LYS 3.1 0.2 - - - -
811V ALA* 1.3 73.8 - - - +
813V ALA* 1.3 70.0 + - + +
814V LYS 2.6 15.6 + - - -
815V ARG* 3.0 18.9 + - + +
816V GLN* 3.3 34.3 + - + +
14W ALA* 5.4 8.1 - - + -
17W LEU* 3.9 27.8 - - + -
18W PHE* 4.0 36.1 - + + -
33W ASP* 6.4 1.1 - - + -
37W ALA* 3.8 31.6 - - + -
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Residues in contact with ALA 813 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809V ARG 3.2 17.0 + - - +
810V LYS* 3.3 8.7 + - - +
812V PHE* 1.3 86.2 - - + +
814V LYS* 1.3 57.7 + - - +
816V GLN* 3.4 28.4 - - - +
817V GLN* 4.3 5.9 + - - +
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Residues in contact with LYS 814 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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810V LYS 3.2 9.6 + - - +
811V ALA* 3.3 21.5 - - + +
812V PHE 2.6 1.6 + - - -
813V ALA* 1.3 78.3 - - - +
815V ARG* 1.3 76.1 + - - +
816V GLN 2.7 4.3 - - - -
817V GLN* 2.6 45.0 + - - +
818V GLN* 2.3 57.1 - - - +
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Residues in contact with ARG 815 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811V ALA 3.8 5.8 + - - +
812V PHE* 3.0 10.6 + - + +
814V LYS* 1.3 101.8 - - - +
816V GLN* 1.3 56.8 + - - +
817V GLN 3.3 0.2 - - - -
818V GLN* 2.6 44.3 - - + +
819V LEU* 3.3 12.5 + - - +
822V ILE* 4.2 3.0 - - + +
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Residues in contact with GLN 816 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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812V PHE* 3.3 31.4 + - + +
813V ALA* 3.4 25.6 - - - +
814V LYS 2.7 0.8 - - - -
815V ARG* 1.3 78.8 - - - +
817V GLN* 1.3 60.5 + - - +
819V LEU* 3.1 42.2 - - + +
820V GLU 4.1 1.6 + - - -
17W LEU* 4.0 25.0 - - + +
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Residues in contact with GLN 817 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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813V ALA 4.3 3.7 + - - +
814V LYS* 2.6 57.0 + - - +
816V GLN* 1.3 71.8 - - - +
818V GLN* 1.3 70.2 + - - +
819V LEU 2.9 8.2 + - - -
820V GLU* 4.5 1.9 + - - +
821V SER* 3.4 17.8 + - - -
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Residues in contact with GLN 818 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814V LYS* 2.3 40.8 - - - +
815V ARG* 2.6 70.2 - - + +
817V GLN* 1.3 92.6 + - + +
819V LEU* 1.3 48.9 - - - +
821V SER* 3.1 7.2 - - - -
822V ILE* 1.9 49.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 819 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
815V ARG 3.3 9.0 + - - +
816V GLN* 3.1 42.0 - - + +
817V GLN 2.9 1.7 - - - -
818V GLN* 1.3 74.9 - - - +
820V GLU* 1.9 68.1 + - - +
821V SER 2.9 9.0 - - - -
822V ILE* 2.6 32.8 + - + +
823V PHE* 3.6 28.5 + - + -
17W LEU* 4.7 20.4 - - + -
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Residues in contact with GLU 820 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
816V GLN 4.1 2.6 + - - -
817V GLN 4.5 2.0 + - - +
819V LEU* 1.9 56.4 + - - +
821V SER* 1.3 70.6 + - - +
822V ILE 2.7 1.4 + - - -
823V PHE* 2.8 32.5 + - + +
824V CYS* 2.9 13.8 + - - +
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Residues in contact with SER 821 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817V GLN 3.4 18.9 + - - -
818V GLN* 3.1 7.4 - - - -
819V LEU 2.4 7.9 + - - -
820V GLU* 1.3 81.0 - - - +
822V ILE* 1.3 56.8 + - - -
824V CYS* 3.5 7.5 - - - +
825V ILE* 2.9 30.7 + - - +
100Z ALA* 3.5 24.6 + - - +
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Residues in contact with ILE 822 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
815V ARG* 4.2 4.7 - - + +
818V GLN* 1.9 55.4 + - + +
819V LEU* 2.6 37.3 + - + +
821V SER* 1.3 68.2 - - - +
823V PHE* 1.3 53.8 - - + +
825V ILE* 2.4 16.6 + - + +
826V GLN* 2.3 62.0 + - + +
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Residues in contact with PHE 823 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
819V LEU* 3.6 21.1 + - + -
820V GLU* 2.8 29.5 + - + +
822V ILE* 1.3 73.3 - - - +
824V CYS* 1.3 55.7 + - - +
826V GLN* 2.7 34.9 + - - -
827V TYR* 2.7 53.3 + + + +
125Z GLY* 3.5 22.7 - - - -
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Residues in contact with CYS 824 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
820V GLU 2.9 7.9 + - - +
821V SER* 3.5 14.1 - - - +
823V PHE* 1.3 81.1 - - - +
825V ILE* 1.3 69.1 + - - +
827V TYR* 5.4 2.0 - - - -
828V ASN* 2.9 44.3 + - - +
97Z ILE* 4.4 21.5 - - - -
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Residues in contact with ILE 825 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
821V SER 2.9 23.3 - - - +
822V ILE* 2.4 22.0 + - + +
824V CYS* 1.3 83.2 - - + +
826V GLN* 1.3 63.6 + - - +
828V ASN* 3.7 2.9 - - - +
829V VAL* 3.3 29.2 + - + +
100Z ALA* 4.1 9.2 - - - +
101Z PHE* 4.1 25.8 - - - +
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Residues in contact with GLN 826 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
822V ILE* 2.3 42.1 + - + +
823V PHE* 2.7 21.2 + - - +
825V ILE* 1.3 68.8 - - - +
827V TYR* 1.3 71.8 + - + +
829V VAL* 3.3 9.4 + - - +
830V ARG* 3.6 28.0 + - - +
121Z LEU* 4.1 15.8 - - - +
125Z GLY* 2.8 38.3 + - - +
126Z GLY* 3.8 14.8 - - - +
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Residues in contact with TYR 827 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
823V PHE* 2.7 52.2 + + + +
824V CYS* 4.6 2.0 - - - +
826V GLN* 1.3 79.3 - - + +
828V ASN* 1.3 64.6 + - - +
830V ARG* 3.0 48.1 + - + +
831V SER* 3.2 12.3 + - - -
90Z GLY* 4.5 14.8 - - - +
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Residues in contact with ASN 828 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
824V CYS* 2.9 39.6 + - - +
825V ILE* 3.7 4.7 - - - +
827V TYR* 1.3 80.6 - - - +
829V VAL* 1.3 61.2 + - + +
831V SER* 3.4 17.7 - - - -
832V PHE* 4.0 5.5 + - - +
91Z ALA* 3.5 19.9 + - - +
92Z ASP* 4.0 22.2 + - - +
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Residues in contact with VAL 829 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825V ILE* 3.3 23.0 + - + +
826V GLN* 3.7 7.4 - - - +
827V TYR 3.1 0.8 - - - -
828V ASN* 1.3 72.7 - - + +
830V ARG* 1.3 73.8 + - + +
831V SER 3.1 1.8 - - - -
832V PHE* 3.0 20.5 + - + +
833V MET* 3.1 27.4 + - + +
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Residues in contact with ARG 830 (chain V).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
826V GLN* 3.6 24.7 + - - +
827V TYR* 3.0 47.6 + - - +
829V VAL* 1.3 85.3 - - + +
831V SER* 1.4 65.1 + - - +
833V MET* 3.1 14.2 + - - +
834V ASN* 3.1 20.5 - - - +
128Z PHE* 4.0 24.0 - - - +
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Residues in contact with SER 831 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
827V TYR 3.2 4.3 + - - -
828V ASN 3.4 15.3 - - - -
829V VAL 3.1 0.2 - - - -
830V ARG* 1.4 73.3 - - - +
832V PHE* 1.3 56.4 + - - +
834V ASN* 2.6 39.6 + - - +
835V VAL* 2.9 14.8 + - - +
88Z LEU* 4.2 11.3 + - - -
90Z GLY* 4.2 10.4 + - - -
91Z ALA* 3.6 23.6 + - - -
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Residues in contact with PHE 832 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
828V ASN 4.3 5.6 - - - +
829V VAL* 3.2 14.4 - - + +
831V SER* 1.3 80.7 - - - +
833V MET* 1.3 80.0 + - + +
835V VAL* 4.3 7.4 - - + +
836V MLY 2.9 76.7 + - + +
845V PHE* 5.2 14.4 - + - -
157Z ILE* 3.7 30.7 - - - +
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Residues in contact with MET 833 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
829V VAL* 3.1 28.5 + - + +
830V ARG* 3.2 12.3 - - - +
831V SER 3.0 0.4 + - - -
832V PHE* 1.3 88.6 - - + +
834V ASN* 1.3 63.4 + - - +
836V MLY 3.4 49.4 - - - +
837V HIS* 4.8 8.5 - - - +
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Residues in contact with ASN 834 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
830V ARG* 3.1 14.2 - - - +
831V SER* 2.6 20.4 + - - +
833V MET* 1.3 79.6 - - - +
835V VAL* 1.3 66.4 + - + +
837V HIS* 3.8 10.3 + - - +
838V TRP* 4.3 5.7 + - - +
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Residues in contact with VAL 835 (chain V).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
831V SER* 2.9 24.1 + - - +
832V PHE* 4.1 4.7 - - + +
834V ASN* 1.3 82.7 - - + +
836V MLY 1.3 53.3 + - - +
837V HIS 2.5 5.8 + - - -
838V TRP* 2.5 51.2 + - + +
841V MET* 3.1 49.6 - - + +
845V PHE* 5.4 1.6 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il