Contacts of the strand formed by residues 56 - 66 (chain Q) in PDB entry 1IBL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 56 (chain Q).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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7Q THR* 3.6 23.6 - - + -
8Q GLY* 3.3 9.0 - - - +
9Q VAL* 4.4 13.9 - - + -
55Q ASP* 1.3 70.6 - - - +
57Q VAL* 1.3 53.2 + - - +
76Q LEU* 3.7 2.9 - - - +
77Q VAL* 2.7 51.5 + - + -
78Q GLU* 2.8 29.8 + - + +
81Q ARG* 3.6 34.1 - - + +
84Q LEU* 4.8 0.9 - - + -
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Residues in contact with VAL 57 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7Q THR* 3.3 4.7 - - - +
8Q GLY 2.9 35.1 + - - +
10Q VAL* 3.7 14.6 - - + -
21Q VAL* 3.9 18.6 - - + -
51Q TYR* 3.8 15.3 - - + -
55Q ASP* 3.4 16.6 - - + +
56Q VAL* 1.3 75.7 - - - +
58Q GLU* 1.3 64.9 + - - +
59Q ILE* 3.9 14.8 - - + +
73Q VAL* 3.4 29.2 - - + -
75Q ARG 3.5 9.6 - - - +
76Q LEU* 4.7 1.1 - - - -
77Q VAL* 4.2 2.7 - - - +
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Residues in contact with GLU 58 (chain Q).
Click here for Legend to table.
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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5Q VAL* 4.5 9.2 - - + +
6Q LEU 3.3 6.1 - - - +
7Q THR* 3.5 16.6 + - - +
57Q VAL* 1.3 76.3 - - - +
59Q ILE* 1.3 69.8 + - - +
73Q VAL* 3.3 3.1 - - - +
74Q LEU* 2.8 48.8 + - + +
75Q ARG* 2.8 49.3 + - + +
77Q VAL* 3.6 20.4 - - + +
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Residues in contact with ILE 59 (chain Q).
Click here for Legend to table.
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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4Q LYS 3.9 0.3 - - - +
5Q VAL* 3.1 7.5 - - - +
6Q LEU* 2.4 51.6 + - + +
21Q VAL* 3.9 30.5 - - + -
23Q VAL* 5.5 1.6 - - + -
42Q TYR* 4.8 7.6 - - + -
44Q ALA* 3.4 18.4 - - + -
57Q VAL* 3.9 12.8 - - + +
58Q GLU* 1.3 86.8 - - - +
60Q ILE* 1.3 58.9 + - - +
71Q PHE* 3.0 44.3 - - + -
72Q ARG 3.5 0.7 - - - +
73Q VAL* 3.4 20.2 - - + -
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Residues in contact with ILE 60 (chain Q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3Q LYS* 3.1 39.5 - - + +
4Q LYS 3.3 6.5 - - - +