Contacts of the helix formed by residues 10 - 80 (chain C) in PDB entry 1KIL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 10 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11C LEU* 1.3 64.9 + - - +
12C GLU* 2.9 9.7 + - - +
13C GLU* 2.8 59.4 + - - +
14C MET* 2.9 20.6 + - - +
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Residues in contact with LEU 11 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10C SER* 1.3 78.7 - - - +
12C GLU* 1.3 64.0 + - + +
14C MET* 4.5 17.5 - - + +
15C GLN* 3.0 51.8 + - + +
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Residues in contact with GLU 12 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10C SER* 4.6 5.5 + - - +
11C LEU* 1.3 82.1 - - + +
13C GLU* 1.3 65.9 + - + +
15C GLN* 3.6 12.5 + - - +
16C ARG* 3.0 25.2 + - - +
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Residues in contact with GLU 13 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10C SER* 2.8 35.4 + - - +
12C GLU* 1.3 82.3 - - + +
14C MET* 1.3 64.2 + - + +
16C ARG* 3.3 7.5 + - - +
17C ARG* 3.1 21.2 + - - +
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Residues in contact with MET 14 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192B LEU* 3.6 37.4 - - + +
10C SER* 2.9 24.6 + - - +
11C LEU* 4.0 17.5 - - + +
13C GLU* 1.3 75.1 - - + +
15C GLN* 1.3 58.0 + - - +
17C ARG* 3.0 10.6 - - - +
18C ALA* 2.9 28.6 + - - +
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Residues in contact with GLN 15 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11C LEU* 3.0 49.9 + - + +
12C GLU* 3.6 11.4 - - - +
14C MET* 1.3 72.1 - - - +
16C ARG* 1.3 63.4 + - - +
17C ARG 2.9 4.9 - - - -
18C ALA* 3.2 6.7 + - - +
19C ASP* 3.0 34.4 + - - +
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Residues in contact with ARG 16 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12C GLU 3.0 17.2 + - - +
13C GLU* 3.8 6.7 - - - +
15C GLN* 1.3 76.4 - - - +
17C ARG* 1.3 59.3 + - - +
19C ASP* 3.9 9.8 - - + +
20C GLN* 3.4 21.8 + - - +
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Residues in contact with ARG 17 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192B LEU* 3.7 23.1 - - + -
196B GLU* 2.7 29.7 + - - -
13C GLU 3.1 12.9 + - - +
14C MET* 3.0 15.0 - - - +
15C GLN 2.9 0.2 - - - -
16C ARG* 1.3 75.5 - - - +
18C ALA* 1.3 62.3 + - - +
19C ASP 3.2 1.3 - - - -
20C GLN* 3.2 27.5 + - - +
21C LEU* 3.1 49.2 + - - +
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Residues in contact with ALA 18 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192B LEU* 4.4 11.9 - - + -
195B ILE* 3.5 41.5 - - + +
14C MET 2.9 14.7 + - - +
15C GLN* 3.2 6.7 + - - +
17C ARG* 1.3 74.3 - - - +
19C ASP* 1.3 62.5 + - - +
21C LEU 3.6 0.7 + - - -
22C ALA* 3.0 28.2 + - - +
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Residues in contact with ASP 19 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C GLN* 3.0 27.4 + - - +
16C ARG* 3.9 9.3 - - + +
17C ARG 3.2 0.2 - - - -
18C ALA* 1.3 77.8 - - - +
20C GLN* 1.3 58.6 + - - +
22C ALA* 3.1 6.3 + - - +
23C ASP* 2.8 42.5 + - - +
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Residues in contact with GLN 20 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C ARG 3.4 12.7 + - - +
17C ARG* 3.2 37.8 + - - +
19C ASP* 1.3 79.5 - - - +
21C LEU* 1.3 57.9 + - - +
23C ASP* 3.3 9.5 + - - +
24C GLU* 3.0 51.8 + - + +
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Residues in contact with LEU 21 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192B LEU* 4.6 2.5 - - + -
195B ILE* 4.0 21.3 - - + +
196B GLU* 3.6 42.2 - - - +
199B HIS* 3.3 30.2 + - + +
17C ARG* 3.1 52.0 + - - +
20C GLN* 1.3 77.0 - - - +
22C ALA* 1.3 52.3 + - - +
24C GLU* 3.6 14.8 + - - +
25C SER* 2.5 37.5 + - - -
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Residues in contact with ALA 22 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195B ILE* 4.9 6.0 - - + +
18C ALA 3.0 18.6 + - - +
19C ASP* 3.1 7.4 + - - +
21C LEU* 1.3 75.1 - - - +
23C ASP* 1.3 67.4 + - - +
25C SER* 3.3 7.3 + - - -
26C LEU* 3.2 21.8 + - - +
142D ARG* 5.2 2.1 + - - +
146D MET* 4.5 10.1 - - + +
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Residues in contact with ASP 23 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C ASP* 2.8 32.5 + - - +
20C GLN* 3.6 9.1 - - - +
22C ALA* 1.3 79.9 - - - +
24C GLU* 1.3 59.0 + - + +
26C LEU* 3.4 5.2 + - - +
27C GLU* 3.0 33.6 + - + +
142D ARG* 3.1 33.4 + - - +
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Residues in contact with GLU 24 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199B HIS* 3.7 22.5 + - + -
203B ILE* 4.9 0.9 - - + +
20C GLN* 3.0 37.7 + - + +
21C LEU* 4.0 11.7 - - - +
22C ALA 3.2 0.2 - - - -
23C ASP* 1.3 77.9 - - + +
25C SER* 1.3 58.9 + - - +
27C GLU* 3.5 10.8 - - + +
28C SER* 2.9 28.6 + - - -
31C ARG* 4.6 2.6 + - - -
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Residues in contact with SER 25 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199B HIS* 2.9 22.1 + - - +
202B ILE* 4.0 22.7 - - - +
21C LEU 2.5 23.4 + - - -
22C ALA* 3.7 7.1 - - - -
23C ASP 3.3 0.4 - - - -
24C GLU* 1.3 74.9 - - - +
26C LEU* 1.3 63.8 + - - +
28C SER* 3.4 3.3 + - - -
29C THR* 3.1 26.7 + - - +
146D MET* 3.7 22.7 - - - -
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Residues in contact with LEU 26 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22C ALA 3.2 13.2 + - - +
23C ASP 3.5 8.5 - - - +
25C SER* 1.3 76.1 - - - +
27C GLU* 1.3 65.1 + - - +
29C THR* 2.8 24.4 + - - +
30C ARG* 3.1 21.7 + - - +
142D ARG* 3.5 58.8 - - + +
145D GLU* 3.7 28.7 - - + +
146D MET* 3.6 38.8 - - + +
149D ASN* 4.2 0.2 - - - +
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Residues in contact with GLU 27 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C ASP* 3.0 24.2 + - + +
24C GLU* 3.5 13.9 - - + +
26C LEU* 1.3 77.8 - - - +
28C SER* 1.3 61.6 + - - +
30C ARG* 3.2 39.8 + - - +
31C ARG* 3.1 43.6 + - - +
142D ARG* 5.4 3.5 + - - -
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Residues in contact with SER 28 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202B ILE* 3.4 22.7 - - - +
203B ILE* 3.5 9.8 - - - +
206B GLU* 2.5 36.3 + - - +
24C GLU 2.9 17.7 + - - -
25C SER 3.5 7.2 - - - -
27C GLU* 1.3 76.7 - - - +
29C THR* 1.3 57.0 + - - +
31C ARG* 3.1 11.4 + - - +
32C MET* 2.9 31.3 + - - +
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Residues in contact with THR 29 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202B ILE* 4.0 13.2 - - + -
25C SER 3.1 15.4 + - - +
26C LEU* 2.8 21.1 + - - +
28C SER* 1.3 76.2 - - - +
30C ARG* 1.3 59.8 + - - +
32C MET* 3.5 10.4 + - - +
33C LEU* 3.2 22.0 + - - +
146D MET* 4.3 11.5 - - - +
149D ASN* 2.9 33.2 + - - +
150D LEU* 3.6 31.9 - - + -
153D VAL* 4.6 1.3 - - - +
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Residues in contact with ARG 30 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C LEU* 3.1 32.3 + - - +
27C GLU* 3.4 42.2 + - - +
28C SER 3.1 0.2 - - - -
29C THR* 1.3 78.8 + - - +
31C ARG* 1.3 64.5 + - + +
33C LEU* 3.4 7.4 + - - +
34C GLN* 3.2 20.3 + - - +
142D ARG* 4.3 11.1 - - - +
145D GLU* 2.8 44.4 + - - +
149D ASN* 3.9 8.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 31 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203B ILE* 4.7 5.7 - - - +
206B GLU* 3.2 36.7 + - - +
210B ARG* 4.0 15.9 - - - +
24C GLU* 4.6 3.2 + - - +
27C GLU* 3.1 27.8 + - - +
28C SER* 3.1 23.2 + - - +
30C ARG* 1.3 75.7 - - + +
32C MET* 1.3 59.4 + - - +
34C GLN* 3.1 11.6 + - - +
35C LEU* 2.8 37.7 + - + +
----------------------------------------------------------
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Residues in contact with MET 32 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202B ILE* 3.0 43.1 - - + +
205B LEU* 4.0 18.8 - - + -
206B GLU* 3.7 24.5 - - + +
209B ILE* 4.2 14.6 - - + -
28C SER* 2.9 29.5 + - - +
29C THR* 3.6 9.9 - - - +
31C ARG* 1.3 76.1 - - - +
33C LEU* 1.3 57.4 + - - +
35C LEU* 3.7 10.3 - - - +
36C VAL* 2.9 36.7 + - - +
150D LEU* 4.0 21.5 - - - -
153D VAL* 3.9 11.9 - - + -
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Residues in contact with LEU 33 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C THR 3.2 5.8 + - - +
30C ARG* 3.4 11.2 - - - +
32C MET* 1.3 77.1 - - - +
34C GLN* 1.3 66.1 + - - +
36C VAL* 3.3 2.9 + - + +
37C GLU* 3.0 31.8 + - + +
149D ASN* 3.0 39.0 - - - +
152D GLN* 4.0 25.6 - - + +
153D VAL* 3.6 29.8 - - + +
156D ILE* 4.1 15.9 - - + -
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Residues in contact with GLN 34 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C ARG 3.2 9.2 + - - +
31C ARG* 3.1 13.0 + - - +
33C LEU* 1.3 79.7 - - - +
35C LEU* 1.3 68.8 + - - +
37C GLU* 3.0 17.5 + - + +
38C GLU* 3.1 37.5 + - + +
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Residues in contact with LEU 35 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206B GLU* 4.4 7.9 - - + +
209B ILE* 3.8 22.4 - - + -
210B ARG* 3.4 52.0 - - + +
213B HIS* 3.1 43.4 - - + +
31C ARG* 2.8 28.8 + - + +
32C MET* 3.7 5.4 - - - +
34C GLN* 1.3 80.5 - - + +
36C VAL* 1.3 62.4 + - - +
38C GLU* 5.0 2.0 - - - +
39C SER* 3.0 21.8 + - - -
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Residues in contact with VAL 36 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209B ILE* 3.7 24.5 - - + -
212B LEU* 6.0 0.4 - - + -
32C MET 2.9 22.7 + - - +
33C LEU* 3.9 4.9 - - - +
35C LEU* 1.3 78.0 - - - +
37C GLU* 1.3 56.9 + - - +
39C SER* 3.6 7.6 - - - -
40C LYS* 3.1 25.3 + - - +
153D VAL* 4.2 8.3 - - + +
156D ILE* 2.9 47.9 - - + +
157D ILE* 3.8 21.5 - - + -
160D LEU* 3.9 13.4 - - + +
----------------------------------------------------------
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Residues in contact with GLU 37 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C LEU* 3.0 23.3 + - + +
34C GLN* 3.0 12.8 + - + +
36C VAL* 1.3 76.2 - - - +
38C GLU* 1.3 66.4 + - + +
40C LYS* 3.3 17.0 + - - +
41C ASP* 2.9 31.6 + - - +
152D GLN* 4.5 5.7 - - - +
156D ILE* 2.9 28.7 - - + +
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Residues in contact with GLU 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213B HIS* 2.8 35.6 + - + +
217B MET* 3.2 15.8 - - + +
34C GLN* 3.1 38.7 + - + +
35C LEU* 3.9 1.9 - - - +
37C GLU* 1.3 77.4 - - + +
39C SER* 1.3 51.7 + - - +
41C ASP* 2.9 11.6 + - - +
42C ALA 2.5 34.0 + - - -
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Residues in contact with SER 39 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209B ILE* 6.0 0.2 - - - +
212B LEU* 4.4 0.9 - - - +
213B HIS* 3.1 29.8 + - - +
216B PHE* 3.5 27.9 - - - -
217B MET* 3.5 10.0 - - - +
35C LEU 3.0 16.5 + - - -
36C VAL* 3.6 7.6 - - - -
38C GLU* 1.3 78.2 - - - +
40C LYS* 1.3 53.4 + - - +
42C ALA 3.1 1.0 + - - -
43C GLY* 2.7 32.2 + - - -
160D LEU* 3.8 14.6 - - - -
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Residues in contact with LYS 40 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C VAL 3.1 12.1 + - - +
37C GLU* 3.6 20.0 - - - +
39C SER* 1.3 77.9 - - - +
41C ASP* 1.3 65.7 + - - +
43C GLY* 3.0 2.3 + - - -
44C ILE* 2.9 44.1 + - + +
156D ILE* 4.4 18.0 - - + +
159D ASN* 3.5 25.9 + - + +
160D LEU* 3.5 15.6 - - + +
163D MET* 3.8 14.6 - - + +
----------------------------------------------------------
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Residues in contact with ASP 41 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C GLU* 2.9 21.5 + - - +
38C GLU* 2.9 13.5 + - - +
40C LYS* 1.3 78.9 - - - +
42C ALA* 1.3 61.7 + - - +
44C ILE* 3.4 9.7 + - - +
45C ARG* 3.0 23.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 42 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B PHE* 3.8 20.0 - - - +
217B MET* 3.1 35.2 - - + -
220B ALA* 3.9 8.9 - - + +
38C GLU 2.5 9.8 + - - +
39C SER 3.6 3.8 - - - +
41C ASP* 1.3 73.6 - - - +
43C GLY* 1.3 58.1 + - - +
45C ARG* 3.3 7.4 + - - +
46C THR* 2.8 32.7 + - - -
----------------------------------------------------------
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Residues in contact with GLY 43 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B PHE* 3.8 18.4 - - - -
39C SER 2.7 18.2 + - - -
40C LYS 3.5 3.4 - - - -
42C ALA* 1.3 71.5 - - - +
44C ILE* 1.3 65.4 + - - +
46C THR* 3.0 9.0 + - - -
47C LEU* 3.0 25.1 + - - +
163D MET* 3.8 15.7 - - - -
167D MET* 5.5 2.8 - - - +
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Residues in contact with ILE 44 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C LYS* 2.9 43.1 + - + +
41C ASP* 3.9 9.2 - - - +
43C GLY* 1.3 74.1 - - - +
45C ARG* 1.3 64.4 + - - +
47C LEU* 3.2 8.6 + - + +
48C VAL* 3.0 34.7 + - + +
163D MET* 3.6 14.7 - - - -
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Residues in contact with ARG 45 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220B ALA* 4.6 18.0 + - + +
224B GLU* 3.1 36.4 + - - -
41C ASP 3.0 17.7 + - - +
42C ALA* 3.6 8.3 - - - +
44C ILE* 1.3 78.3 - - - +
46C THR* 1.3 57.2 + - - +
48C VAL* 3.4 8.0 + - - +
49C MET* 3.1 53.9 + - + +
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Residues in contact with THR 46 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B PHE* 4.5 1.6 + - - -
219B MET* 3.8 25.1 - - + +
220B ALA* 3.3 22.6 + - - +
223B VAL* 4.0 20.2 - - + -
42C ALA 2.8 19.5 + - - -
43C GLY* 3.4 11.0 - - - -
45C ARG* 1.3 74.7 - - - +
47C LEU* 1.3 65.4 + - - +
48C VAL 3.2 0.2 + - - -
49C MET* 3.2 8.8 + - - +
50C LEU* 2.9 39.4 + - + +
167D MET* 4.2 11.2 - - + -
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Residues in contact with LEU 47 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C GLY 3.0 13.8 + - - +
44C ILE* 3.8 8.1 - - + +
46C THR* 1.3 77.1 - - - +
48C VAL* 1.3 62.8 + - + +
50C LEU* 3.5 10.1 + - + +
51C ASP* 3.1 26.9 + - - +
163D MET* 3.7 37.0 - - + -
166D ASP* 3.8 18.8 - - + +
167D MET* 3.8 40.6 - - + +
170D GLU* 5.5 3.6 - - + -
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Residues in contact with VAL 48 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C ILE* 3.0 30.0 + - + +
45C ARG* 3.6 7.6 - - - +
47C LEU* 1.3 79.5 - - + +
49C MET* 1.3 58.7 + - + +
51C ASP* 3.1 8.8 + - + +
52C GLU* 2.9 52.2 + - + +
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Residues in contact with MET 49 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220B ALA* 4.4 4.0 - - - +
223B VAL* 3.6 16.8 - - + +
224B GLU* 3.1 55.2 - - + +
227B GLY* 6.1 0.2 - - - -
45C ARG* 3.1 49.8 + - + +
46C THR* 3.8 1.6 - - - +
48C VAL* 1.3 73.4 - - + +
50C LEU* 1.3 61.8 + - - +
52C GLU* 3.6 16.1 - - - +
53C GLN* 2.8 46.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 50 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A ARG* 4.0 19.1 - - - +
223B VAL* 3.8 23.6 - - + -
46C THR* 2.9 36.4 + - + +
47C LEU* 3.7 9.0 - - + +
49C MET* 1.3 75.7 - - - +
51C ASP* 1.3 58.1 + - - +
53C GLN* 3.8 2.0 - - - -
54C GLY* 2.8 24.4 + - - -
167D MET* 4.3 15.9 - - + +
170D GLU* 4.0 22.7 - - + -
171D ILE* 3.4 36.1 - - + -
174D GLN* 2.9 17.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP 51 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C LEU 3.1 15.6 + - - +
48C VAL* 3.3 11.7 - - + +
50C LEU* 1.3 75.7 - - - +
52C GLU* 1.3 67.1 + - + +
54C GLY* 3.2 2.3 + - - -
55C GLU* 3.1 35.0 + - - +
170D GLU* 5.2 10.0 - - - +
----------------------------------------------------------
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Residues in contact with GLU 52 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48C VAL* 2.9 30.0 + - + +
49C MET* 3.6 24.5 + - - +
51C ASP* 1.3 76.2 - - + +
53C GLN* 1.3 64.4 + - + +
55C GLU* 3.3 11.8 + - - +
56C GLN* 3.2 28.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 53 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A ARG* 2.6 48.0 + - - +
223B VAL* 2.8 37.0 + - - +
227B GLY* 3.4 19.3 - - - -
230B ILE* 3.6 9.7 - - + +
49C MET* 2.8 40.7 + - + +
50C LEU* 4.0 1.7 - - - +
52C GLU* 1.3 70.3 - - + +
54C GLY* 1.3 60.7 + - - +
55C GLU 3.2 0.2 - - - -
56C GLN* 3.1 24.3 + - - +
57C LEU* 2.8 34.8 + - - +
----------------------------------------------------------
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Residues in contact with GLY 54 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C LEU 2.8 18.9 + - - -
51C ASP* 3.2 2.9 + - - -
53C GLN* 1.3 77.0 - - - +
55C GLU* 1.3 63.8 + - - +
57C LEU* 3.2 7.6 + - - +
58C ASP* 3.1 27.5 + - - +
302C MG 4.4 11.4 - - - -
174D GLN* 3.6 18.6 - - - +
177D GLN* 4.5 1.9 - - - +
----------------------------------------------------------
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Residues in contact with GLU 55 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C ASP* 3.1 24.2 + - - +
52C GLU* 3.5 9.2 - - - +
53C GLN 3.2 0.2 - - - -
54C GLY* 1.3 73.8 - - - +
56C GLN* 1.3 66.7 + - - +
58C ASP* 3.2 17.0 + - - +
59C ARG* 3.1 43.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 56 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227B GLY* 4.9 5.9 + - - -
230B ILE* 3.7 22.2 - - + +
231B ASP* 3.5 22.6 + - - +
234B GLU* 2.8 31.1 - - + +
52C GLU* 3.3 14.6 + - - +
53C GLN* 3.1 30.4 + - - +
55C GLU* 1.3 77.7 - - - +
57C LEU* 1.3 55.9 + - - +
59C ARG* 3.2 22.2 + - - +
60C VAL* 2.9 32.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 57 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A ARG* 4.6 5.2 - - - +
60A LEU* 4.6 7.2 - - + -
63A LEU* 4.9 8.1 - - + -
230B ILE* 4.5 19.7 - - + -
233B ILE* 5.9 1.3 - - + -
53C GLN 2.8 17.5 + - - +
54C GLY* 3.5 8.3 - - - +
56C GLN* 1.3 76.1 - - - +
58C ASP* 1.3 51.5 + - - +
60C VAL* 3.1 10.0 + - + +
61C GLU* 2.7 31.7 + - - +
174D GLN* 3.7 26.7 - - + +
177D GLN* 3.7 22.0 - - - +
178D ILE* 3.9 30.7 - - + -
181D ILE* 3.5 19.6 - - + +
----------------------------------------------------------
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Residues in contact with ASP 58 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C GLY 3.1 14.9 + - - +
55C GLU* 3.2 23.0 + - - +
57C LEU* 1.3 73.0 - - - +
59C ARG* 1.3 57.5 + - + +
61C GLU* 3.5 3.2 - - - +
62C GLU* 2.6 53.2 + - + +
177D GLN* 2.7 32.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 59 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
234B GLU* 3.0 36.9 + - + +
237B VAL* 5.3 0.3 - - - +
52C GLU 5.5 0.2 + - - -
55C GLU* 3.1 32.0 + - - +
56C GLN* 3.6 21.0 - - - +
58C ASP* 1.3 78.9 - - + +
60C VAL* 1.3 63.1 + - - +
62C GLU* 3.3 18.4 + - - +
63C GLY* 3.0 19.6 + - - -
----------------------------------------------------------
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Residues in contact with VAL 60 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A LEU* 5.0 2.7 - - + -
230B ILE* 5.2 1.1 - - + +
233B ILE* 4.0 19.7 - - + +
234B GLU* 3.6 33.9 - - + -
237B VAL* 4.1 23.7 - - + +
56C GLN* 2.9 17.9 + - + +
57C LEU* 3.1 14.6 + - + +
59C ARG* 1.3 77.2 - - - +
61C GLU* 1.3 65.2 + - - +
63C GLY* 2.9 12.6 + - - -
64C MET* 3.0 14.2 + - + +
181D ILE* 3.6 27.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 61 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C LEU 2.7 19.9 + - - +
58C ASP* 3.7 4.3 - - - +
60C VAL* 1.3 73.8 - - - +
62C GLU* 1.3 63.8 + - + +
64C MET* 2.9 19.4 + - - +
65C ASN* 3.1 16.6 + - - +
177D GLN* 3.3 17.7 + - - +
180D ARG* 2.6 47.4 + - - -
181D ILE* 3.9 15.3 - - + -
184D LYS* 2.8 34.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 62 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C ASP* 2.6 45.0 + - + +
59C ARG* 3.7 16.9 + - - +
61C GLU* 1.3 72.5 - - + +
63C GLY* 1.3 61.8 + - - +
65C ASN* 3.2 16.6 + - - +
66C HIS* 3.1 21.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY 63 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237B VAL* 4.2 3.8 - - - -
241B VAL* 3.7 22.2 - - - +
59C ARG 3.0 10.0 + - - -
60C VAL 2.9 8.8 + - - -
62C GLU* 1.3 74.9 - - - +
64C MET* 1.3 70.8 + - - +
66C HIS* 3.3 4.3 + - - -
67C ILE* 3.0 27.7 + - - +
----------------------------------------------------------
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Residues in contact with MET 64 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A LEU* 6.2 0.7 - - - -
70A LEU* 3.6 21.5 - - + -
237B VAL* 3.3 36.6 - - + -
60C VAL* 3.0 14.8 + - - +
61C GLU* 2.9 9.5 + - - +
63C GLY* 1.3 74.8 - - - +
65C ASN* 1.3 57.1 + - - +
67C ILE* 3.4 8.2 + - + -
68C ASN* 2.9 27.8 + - - +
181D ILE* 4.1 22.7 - - + +
184D LYS* 3.9 23.3 - - + -
185D ALA* 3.7 34.8 - - - -
188D ASN* 3.1 18.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 65 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C GLU* 3.1 15.1 + - - +
62C GLU* 3.4 17.7 - - - +
64C MET* 1.3 72.2 - - - +
66C HIS* 1.3 64.8 + - - +
68C ASN* 3.2 11.0 + - - +
69C GLN* 3.0 35.3 + - - +
184D LYS* 2.6 35.0 + - - +
----------------------------------------------------------
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Residues in contact with HIS 66 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241B VAL* 3.4 23.3 - - + +
245B GLU* 3.3 29.4 + - + -
62C GLU 3.1 13.2 + - - +
63C GLY* 3.8 8.1 - - - +
64C MET 3.3 0.2 - - - -
65C ASN* 1.3 74.1 - - - +
67C ILE* 1.3 65.8 + - - +
69C GLN* 2.9 25.9 + - - +
70C ASP* 2.9 48.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 67 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70A LEU* 4.1 7.6 - - + -
240B ALA* 3.9 26.9 - - + +
241B VAL* 4.0 22.0 - - + +
244B VAL* 4.4 13.9 - - + -
63C GLY 3.0 19.1 + - - +
64C MET* 3.9 21.1 - - + -
65C ASN 3.3 0.2 - - - -
66C HIS* 1.3 76.1 - - - +
68C ASN* 1.3 64.4 + - - +
70C ASP* 3.2 7.4 + - - +
71C MET* 2.9 34.5 + - + +
188D ASN* 3.3 33.0 - - + +
192D ILE* 4.4 9.4 - - + -
----------------------------------------------------------
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Residues in contact with ASN 68 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C MET 2.9 13.9 + - - +
65C ASN* 3.3 13.5 + - - +
67C ILE* 1.3 79.0 - - - +
69C GLN* 1.3 66.6 + - - +
71C MET* 4.7 0.2 - - - -
72C LYS* 3.3 31.8 + - - +
187D SER* 5.1 3.8 + - - -
188D ASN* 3.5 13.8 + - - +
191D ARG* 2.5 46.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 69 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C ASN* 3.0 25.8 + - - +
66C HIS* 2.9 24.0 + - - +
68C ASN* 1.3 80.9 - - - +
70C ASP* 1.3 67.6 + - - +
72C LYS* 3.3 30.2 + - - +
73C GLU* 3.6 11.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 70 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241B VAL 4.8 0.7 - - - +
244B VAL* 3.5 21.5 - - + +
245B GLU* 3.5 17.6 + - - +
248B VAL* 3.7 22.3 - - + +
66C HIS* 2.9 50.1 + - - +
67C ILE* 3.7 0.7 - - - +
69C GLN* 1.3 75.9 + - - +
71C MET* 1.3 63.7 + - - +
73C GLU* 2.9 28.8 + - - +
74C ALA 3.0 9.5 + - - -
----------------------------------------------------------
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Residues in contact with MET 71 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PHE* 3.8 21.5 - - + -
244B VAL* 3.8 20.0 - - - -
67C ILE* 2.9 31.1 + - + +
68C ASN* 3.3 0.4 + - - -
70C ASP* 1.3 72.5 - - - +
72C LYS* 1.3 59.6 + - - +
74C ALA* 3.3 6.4 + - + +
75C GLU* 2.9 37.3 + - - +
188D ASN* 5.0 0.9 - - - +
191D ARG* 3.6 45.3 - - + +
192D ILE* 3.9 20.0 - - + -
195D ALA* 3.4 33.7 - - + -
----------------------------------------------------------
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Residues in contact with LYS 72 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C ASN* 3.3 34.0 + - - +
69C GLN* 3.4 17.3 - - + +
70C ASP 3.1 0.2 - - - -
71C MET* 1.3 77.5 - - - +
73C GLU* 1.3 57.9 + - - +
75C GLU* 3.3 5.3 + - - +
76C LYS* 2.8 34.6 + - - +
191D ARG* 2.9 24.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU 73 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248B VAL* 4.4 15.3 - - + +
69C GLN 3.7 14.5 - - - +
70C ASP* 2.9 15.0 + - - +
72C LYS* 1.3 80.0 - - - +
74C ALA* 1.3 57.1 + - - +
76C LYS* 3.2 20.7 + - - +
77C ASN* 2.7 48.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 74 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PHE* 3.6 26.2 - - + -
248B VAL* 3.3 25.7 - - + +
70C ASP 3.0 6.9 + - - +
71C MET* 3.3 15.0 + - + +
73C GLU* 1.3 75.9 - - - +
75C GLU* 1.3 54.0 + - - +
77C ASN* 3.6 5.2 - - - +
78C LEU* 2.6 43.7 + - + +
195D ALA* 4.8 2.2 - - + -
----------------------------------------------------------
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Residues in contact with GLU 75 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71C MET* 2.9 25.5 + - - +
72C LYS* 3.5 5.4 - - - +
74C ALA* 1.3 75.0 - - - +
76C LYS* 1.3 64.8 + - - +
78C LEU* 3.8 5.5 - - - +
79C LYS* 2.9 35.8 + - + +
191D ARG* 2.6 67.6 + - - +
194D GLU* 6.0 0.2 - - - +
195D ALA* 4.7 3.0 - - + +
198D ARG* 3.5 28.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 76 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72C LYS 2.8 20.9 + - - +
73C GLU* 3.5 23.2 + - - +
75C GLU* 1.3 74.5 - - - +
77C ASN* 1.3 68.0 + - - +
79C LYS* 3.6 4.5 - - - +
80C ASP* 2.6 42.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 77 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A ASN 5.9 1.5 + - - -
248B VAL* 4.5 14.9 - - - +
250B ASP* 4.8 8.0 - - - +
73C GLU* 2.7 32.9 + - - +
74C ALA* 3.6 6.3 - - - +
76C LYS* 1.3 79.1 - - - +
78C LEU* 1.3 66.1 + - + +
80C ASP* 2.7 28.8 + - - +
81C LEU* 4.0 7.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU 78 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PHE* 5.2 5.8 - - + -
84A LEU* 3.9 27.8 - - + -
74C ALA* 2.6 24.2 + - + +
75C GLU* 3.8 4.7 - - - +
77C ASN* 1.3 73.1 - - + +
79C LYS* 1.3 62.1 + - - +
81C LEU* 3.4 22.7 + - + +
195D ALA* 3.5 42.8 - - + +
198D ARG* 3.7 36.6 - - + +
199D ALA* 4.5 9.9 - - + -
202D MET* 4.7 11.7 - - - +
----------------------------------------------------------
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Residues in contact with LYS 79 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C GLU* 2.9 23.9 + - + +
76C LYS* 3.6 6.5 - - - +
78C LEU* 1.3 71.6 - - - +
80C ASP* 1.3 58.0 + - - +
81C LEU* 2.5 25.1 + - - -
198D ARG* 5.4 10.5 - - - +
----------------------------------------------------------
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Residues in contact with ASP 80 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A LYS* 5.5 2.6 + - - -
76C LYS* 2.6 37.3 - - - +
77C ASN* 2.7 20.4 + - - +
79C LYS* 1.3 72.7 - - - +
81C LEU* 1.3 68.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il