Contacts of the helix formed by residues 140 - 202 (chain D) in PDB entry 1KIL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 140 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139D GLY* 1.3 79.2 - - - +
141D ALA* 1.3 74.4 + - - +
142D ARG* 3.2 13.4 + - - +
143D GLU* 3.2 31.7 + - - +
144D ASN* 2.8 27.4 + - - -
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Residues in contact with ALA 141 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140D SER* 1.3 81.8 + - - +
142D ARG* 1.3 60.1 + - + +
144D ASN* 3.9 6.9 - - - +
145D GLU* 3.4 17.0 + - - +
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Residues in contact with ARG 142 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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22C ALA* 5.2 1.8 + - - +
23C ASP* 3.1 34.9 + - - +
26C LEU* 3.5 40.9 - - + +
27C GLU* 5.4 3.4 + - - -
30C ARG* 4.3 13.5 - - - +
140D SER* 4.2 9.0 - - - +
141D ALA* 1.3 79.9 - - + +
143D GLU* 1.3 66.3 + - + +
144D ASN 3.1 1.6 - - - -
145D GLU* 3.3 11.6 + - - +
146D MET* 3.1 21.3 + - - +
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Residues in contact with GLU 143 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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139D GLY 2.6 33.6 + - - +
140D SER* 3.2 28.2 + - - +
142D ARG* 1.3 81.3 - - + +
144D ASN* 1.3 61.4 + - - +
146D MET* 3.6 8.1 - - - +
147D ASP* 3.3 25.2 + - - +
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Residues in contact with ASN 144 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139D GLY* 3.2 29.7 + - - -
140D SER 2.8 27.6 + - - +
141D ALA* 3.9 6.8 - - - +
143D GLU* 1.3 76.3 - - - +
145D GLU* 1.3 65.4 + - - +
146D MET 3.1 1.8 - - - -
147D ASP* 3.1 11.3 + - - +
148D GLU* 2.9 39.5 + - + +
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Residues in contact with GLU 145 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26C LEU* 3.7 13.7 - - + +
30C ARG* 2.8 53.4 + - - +
141D ALA 3.4 11.7 + - - +
142D ARG* 3.3 13.5 + - - +
144D ASN* 1.3 76.7 - - - +
146D MET* 1.3 64.0 + - - +
148D GLU* 4.5 8.3 + - - -
149D ASN* 2.9 44.2 + - - +
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Residues in contact with MET 146 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198B ARG* 6.4 1.3 - - + -
202B ILE* 5.0 6.7 - - + -
22C ALA* 4.5 13.2 - - + +
25C SER* 3.7 45.5 - - - +
26C LEU* 3.6 14.5 - - + +
29C THR* 4.3 12.0 - - + +
142D ARG 3.1 9.5 + - - +
143D GLU* 3.6 12.8 - - - +
144D ASN 3.1 0.2 - - - -
145D GLU* 1.3 81.1 - - - +
147D ASP* 1.3 69.5 + - - +
149D ASN* 3.8 1.4 - - - +
150D LEU* 3.4 28.9 + - + +
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Residues in contact with ASP 147 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A ARG* 4.8 18.8 + - - +
143D GLU* 3.3 15.9 - - - +
144D ASN* 3.1 14.1 + - - +
146D MET* 1.3 83.4 - - - +
148D GLU* 1.3 61.3 + - + +
150D LEU* 3.3 7.9 + - - +
151D GLU* 2.9 29.5 + - - +
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Residues in contact with GLU 148 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144D ASN* 2.9 33.8 + - + +
145D GLU* 4.1 6.7 - - - +
147D ASP* 1.3 71.2 - - + +
149D ASN* 1.3 61.5 + - - +
151D GLU* 3.3 11.1 + - - +
152D GLN* 2.8 34.0 + - - +
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Residues in contact with ASN 149 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C LEU* 4.2 0.2 - - - +
29C THR* 2.9 36.9 + - - +
30C ARG* 3.9 9.6 - - - +
33C LEU* 3.0 29.4 - - + +
145D GLU* 2.9 47.8 + - - +
146D MET 3.8 1.1 - - - +
148D GLU* 1.3 77.2 - - - +
150D LEU* 1.3 53.9 + - - +
152D GLN* 3.2 5.6 + - - +
153D VAL* 2.8 39.4 + - - +
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Residues in contact with LEU 150 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A ARG* 6.1 4.5 - - + -
32A LEU* 4.2 27.4 - - + +
35A THR* 4.6 8.6 + - + +
202B ILE* 4.2 11.0 - - + -
205B LEU* 4.5 10.5 - - + -
29C THR* 3.6 23.1 - - + -
32C MET* 4.0 19.7 - - - -
146D MET* 3.4 18.3 + - + +
147D ASP* 3.3 10.6 + - - +
149D ASN* 1.3 78.1 - - - +
151D GLU* 1.3 66.0 + - - +
153D VAL* 3.1 8.1 + - + +
154D SER* 2.8 26.6 + - - -
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Residues in contact with GLU 151 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A ARG* 5.6 3.5 + - - -
147D ASP 2.9 17.5 + - - +
148D GLU* 3.7 11.6 - - - +
150D LEU* 1.3 76.0 - - - +
152D GLN* 1.3 61.0 + - - +
154D SER* 3.6 6.3 + - - -
155D GLY* 3.1 18.0 + - - -
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Residues in contact with GLN 152 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33C LEU* 4.0 24.6 - - + +
37C GLU* 4.5 4.2 - - - +
148D GLU* 2.8 18.0 + - - +
149D ASN* 3.6 4.5 - - - +
151D GLU* 1.3 76.1 - - - +
153D VAL* 1.3 66.6 + - - +
155D GLY* 3.1 2.8 + - - -
156D ILE* 2.9 40.5 + - + +
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Residues in contact with VAL 153 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A THR* 4.5 9.9 - - + -
209B ILE* 3.8 28.0 - - + -
29C THR 4.6 2.0 - - - +
32C MET* 3.9 14.8 - - + +
33C LEU* 3.6 37.0 - - + +
36C VAL* 4.2 6.3 - - + -
149D ASN 2.8 25.9 + - - +
150D LEU* 3.1 9.4 + - + +
152D GLN* 1.3 71.7 - - - +
154D SER* 1.3 65.8 + - - +
156D ILE* 3.1 6.8 + - - +
157D ILE* 2.8 34.5 + - + +
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Residues in contact with SER 154 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A THR* 3.4 26.4 + - - -
38A GLN* 2.8 43.4 + - - +
150D LEU 2.8 17.0 + - - -
151D GLU* 3.8 6.3 + - - -
153D VAL* 1.3 74.2 - - - +
155D GLY* 1.3 63.5 + - - +
157D ILE* 3.4 3.5 + - - -
158D GLY* 3.3 5.2 + - - -
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Residues in contact with GLY 155 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151D GLU 3.1 11.8 + - - -
152D GLN* 3.1 8.4 + - - -
154D SER* 1.3 78.1 + - - +
156D ILE* 1.3 61.7 + - - +
158D GLY* 3.0 12.1 + - - -
159D ASN* 3.4 15.7 + - - +
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Residues in contact with ILE 156 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33C LEU* 4.1 13.7 - - + -
36C VAL* 2.9 43.3 - - + +
37C GLU* 2.9 30.7 - - + +
40C LYS* 4.4 24.0 - - + +
152D GLN* 2.9 37.8 + - + +
153D VAL 3.7 0.9 - - - +
155D GLY* 1.3 72.1 - - - +
157D ILE* 1.3 62.7 + - - +
159D ASN* 2.8 29.4 + - - +
160D LEU* 2.9 13.2 + - + +
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Residues in contact with ILE 157 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A THR* 5.3 0.9 - - + -
38A GLN* 3.4 49.8 - - + +
39A VAL* 4.0 22.9 - - + -
42A VAL* 3.9 8.1 - - + -
209B ILE* 4.6 2.0 - - + -
212B LEU* 4.1 7.4 - - + -
36C VAL* 3.8 26.7 - - + -
153D VAL* 2.8 29.9 + - + +
154D SER* 4.2 1.8 - - - -
155D GLY 3.3 0.2 - - - -
156D ILE* 1.3 75.2 - - - +
158D GLY* 1.3 57.6 + - - +
160D LEU* 3.7 18.4 - - + +
161D ARG* 3.0 26.7 + - - +
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Residues in contact with GLY 158 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A GLN* 3.6 8.5 - - - +
154D SER 3.3 7.1 + - - -
155D GLY 3.0 10.4 + - - -
156D ILE 3.0 1.4 - - - -
157D ILE* 1.3 75.4 - - - +
159D ASN* 1.3 66.4 + - - +
161D ARG* 3.5 11.2 + - - +
162D HIS* 3.3 19.9 + - - +
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Residues in contact with ASN 159 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40C LYS* 3.5 27.9 + - + +
155D GLY 3.8 13.9 + - - +
156D ILE* 2.8 15.7 + - + +
158D GLY* 1.3 76.8 - - - +
160D LEU* 1.3 65.2 + - - +
162D HIS* 3.0 18.9 + - - +
163D MET* 3.0 27.2 + - + +
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Residues in contact with LEU 160 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A VAL* 4.1 6.5 - - + -
212B LEU* 3.8 24.0 - - + -
216B PHE* 3.6 26.0 - - + -
36C VAL* 3.9 25.1 - - + -
39C SER* 3.8 13.2 - - - -
40C LYS* 3.5 24.5 - - + +
156D ILE* 2.9 15.6 + - + +
157D ILE* 3.7 14.4 - - + +
159D ASN* 1.3 76.7 - - - +
161D ARG* 1.3 55.9 + - - +
163D MET* 3.1 26.4 + - + +
164D ALA* 2.8 30.0 + - - +
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Residues in contact with ARG 161 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38A GLN* 6.4 1.3 - - - -
41A GLU* 2.8 42.7 + - - +
42A VAL* 3.6 21.5 - - + +
45A ILE* 4.3 11.3 - - + +
157D ILE 3.0 17.2 + - - +
158D GLY* 3.6 10.3 - - - +
159D ASN 3.2 0.2 - - - -
160D LEU* 1.3 74.7 - - - +
162D HIS* 1.3 63.5 + - - +
164D ALA* 3.2 4.4 + - - +
165D LEU* 3.0 52.4 + - + +
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Residues in contact with HIS 162 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158D GLY 3.3 9.5 + - - +
159D ASN* 3.0 12.3 + - - +
161D ARG* 1.3 83.2 - - - +
163D MET* 1.3 61.0 + - + +
165D LEU* 3.5 12.1 + - - +
166D ASP* 3.2 49.1 + - - +
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Residues in contact with MET 163 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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216B PHE* 4.7 7.4 - - + -
40C LYS* 3.8 24.0 - - + -
43C GLY* 3.8 7.2 - - - -
44C ILE* 3.6 38.8 - - - -
47C LEU* 3.7 18.9 - - + +
159D ASN* 3.0 17.2 + - + +
160D LEU* 3.1 42.8 + - + +
162D HIS* 1.3 78.6 - - + +
164D ALA* 1.3 61.4 + - - +
165D LEU 3.2 0.4 - - - -
166D ASP* 3.8 6.6 - - - +
167D MET* 2.8 36.1 + - + +
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Residues in contact with ALA 164 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A VAL* 4.3 3.1 - - + -
45A ILE* 3.7 21.8 - - + +
46A MET* 3.1 39.5 - - + -
49A ASN* 2.5 23.2 + - - +
216B PHE* 4.9 0.8 - - - -
160D LEU 2.8 12.6 + - - +
161D ARG* 3.5 12.6 - - - +
163D MET* 1.3 77.9 - - - +
165D LEU* 1.3 60.6 + - - +
168D GLY* 3.3 7.6 + - - -
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Residues in contact with LEU 165 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A ILE* 4.0 29.2 - - + -
161D ARG* 3.0 50.7 + - - +
162D HIS* 3.8 9.9 - - - +
164D ALA* 1.3 76.2 - - - +
166D ASP* 1.3 62.6 + - - +
168D GLY* 4.2 0.7 - - - -
169D ASN* 2.7 40.0 + - - +
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Residues in contact with ASP 166 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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47C LEU* 3.8 25.3 - - + +
162D HIS* 3.2 41.3 + - - +
163D MET* 3.3 5.8 + - - +
165D LEU* 1.3 73.4 - - - +
167D MET* 1.3 68.7 + - - +
169D ASN* 3.1 8.9 + - - +
170D GLU* 2.8 25.1 + - + +
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Residues in contact with MET 167 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46A MET* 3.5 31.0 - - + +
49A ASN* 3.7 7.0 - - + +
53A VAL* 5.1 1.3 - - + -
216B PHE* 4.8 9.9 - - - -
219B MET* 3.1 49.1 - - + -
43C GLY* 5.5 2.5 - - - +
46C THR* 4.2 17.5 - - + -
47C LEU* 3.8 20.2 - - + -
50C LEU* 4.5 5.8 - - + -
163D MET* 2.8 22.7 + - + +
164D ALA* 3.6 5.4 - - - +
166D ASP* 1.3 76.1 - - - +
168D GLY* 1.3 52.6 + - - +
170D GLU* 3.0 4.7 + - - +
171D ILE* 2.7 42.4 + - + +
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Residues in contact with GLY 168 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ASN* 3.0 23.5 + - - -
52A LYS* 4.1 7.6 + - - -
164D ALA 3.3 9.3 + - - -
165D LEU 4.2 0.7 - - - -
167D MET* 1.3 76.2 - - - +
169D ASN* 1.3 60.0 + - - +
171D ILE* 3.7 7.2 - - - +
172D ASP* 2.9 39.4 + - - +
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Residues in contact with ASN 169 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165D LEU* 2.7 33.5 + - - +
166D ASP* 3.1 8.3 + - - +
168D GLY* 1.3 76.2 - - - +
170D GLU* 1.3 57.8 + - - +
172D ASP* 3.5 9.7 + - - +
173D THR* 2.9 33.1 + - - +
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Residues in contact with GLU 170 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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47C LEU* 5.5 2.9 - - + -
50C LEU* 4.0 24.3 - - + +
51C ASP* 5.2 9.5 - - - +
54C GLY* 5.2 0.2 - - - -
302C MG 3.9 13.9 - - - -
166D ASP 2.8 13.8 + - - +
167D MET 3.4 7.9 - - - +
169D ASN* 1.3 77.8 - - - +
171D ILE* 1.3 65.7 - - - +
173D THR* 3.4 11.6 + - - +
174D GLN* 2.9 58.3 + - - +
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Residues in contact with ILE 171 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A ASN* 5.2 1.1 - - - +
52A LYS* 3.7 42.4 - - + +
53A VAL* 3.9 24.9 - - + +
56A ARG* 4.3 12.8 - - - +
219B MET* 5.5 0.7 - - - -
223B VAL* 5.1 0.4 - - + -
50C LEU* 3.4 42.2 - - + -
167D MET* 2.7 34.8 + - + +
168D GLY* 3.7 8.1 - - - +
170D GLU* 1.3 74.0 - - - +
172D ASP* 1.3 50.8 + - - +
174D GLN* 3.3 4.4 + - - +
175D ASN* 2.8 40.1 + - - +
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Residues in contact with ASP 172 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A LYS* 2.6 44.7 + - - +
168D GLY 2.9 19.8 + - - +
169D ASN* 3.7 9.5 - - - +
170D GLU 3.2 0.2 - - - -
171D ILE* 1.3 72.4 - - - +
173D THR* 1.3 70.3 + - - +
175D ASN* 3.1 18.3 + - - +
176D ARG* 3.1 32.6 + - - +
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Residues in contact with THR 173 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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169D ASN 2.9 17.7 + - - -
170D GLU* 3.8 15.8 + - - +
172D ASP* 1.3 79.3 - - - +
174D GLN* 1.3 65.3 + - + +
176D ARG* 3.0 27.4 + - - +
177D GLN* 3.0 20.9 + - + +
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Residues in contact with GLN 174 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56A ARG* 3.0 38.6 + - - +
50C LEU* 2.9 33.4 + - - +
54C GLY* 3.6 15.4 - - - -
57C LEU* 3.7 15.9 - - + +
170D GLU* 2.9 46.3 + - - +
171D ILE* 3.7 3.4 - - - +
173D THR* 1.3 80.4 - - + +
175D ASN* 1.3 57.0 + - - +
177D GLN* 3.0 15.0 + - - +
178D ILE* 2.7 36.9 + - + +
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Residues in contact with ASN 175 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A LYS* 3.5 23.2 + - - +
55A GLU* 4.1 15.0 + - - +
56A ARG* 3.2 32.9 - - - +
59A LYS* 3.7 24.4 - - - +
171D ILE* 2.8 29.0 + - - +
172D ASP* 3.1 12.1 + - - +
174D GLN* 1.3 73.5 - - - +
176D ARG* 1.3 62.1 + - + +
178D ILE* 3.4 2.8 + - - +
179D ASP* 3.1 28.9 + - - +
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Residues in contact with ARG 176 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172D ASP* 3.1 26.9 + - - +
173D THR* 3.0 36.6 + - - +
175D ASN* 1.3 74.1 - - + +
177D GLN* 1.3 61.7 + - - +
179D ASP* 3.1 11.2 + - - +
180D ARG* 2.9 34.6 + - - +
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Residues in contact with GLN 177 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C GLY* 4.5 2.3 - - - +
57C LEU* 3.7 26.0 + - + +
58C ASP* 2.7 39.9 + - - +
61C GLU* 3.3 18.1 + - - +
173D THR* 3.0 14.8 + - + +
174D GLN* 3.6 15.3 - - - +
176D ARG* 1.3 79.3 - - - +
178D ILE* 1.3 57.1 + - - +
180D ARG* 3.3 28.4 + - - +
181D ILE* 2.8 41.3 + - + +
----------------------------------------------------------
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Residues in contact with ILE 178 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A ARG* 4.1 22.4 - - + +
59A LYS* 3.8 28.7 - - + -
60A LEU* 4.0 25.1 - - + -
63A LEU* 3.9 20.6 - - + -
57C LEU* 3.9 26.9 - - + -
174D GLN 2.7 29.4 + - - +
175D ASN* 3.9 9.0 - - - +
177D GLN* 1.3 72.3 - - - +
179D ASP* 1.3 63.9 + - - +
181D ILE* 3.4 7.6 + - - +
182D MET* 3.1 28.5 + - + +
----------------------------------------------------------
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Residues in contact with ASP 179 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A LYS* 3.0 38.4 + - - +
175D ASN 3.1 14.9 + - - +
176D ARG* 3.1 12.8 + - - +
178D ILE* 1.3 77.0 - - - +
180D ARG* 1.3 66.9 + - - +
182D MET* 3.1 17.6 + - - +
183D GLU* 3.0 30.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 180 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C GLU* 2.6 41.1 + - - +
176D ARG* 2.9 16.2 + - - +
177D GLN* 3.4 31.1 - - - +
179D ASP* 1.3 76.1 - - - +
181D ILE* 1.3 63.1 + - - +
183D GLU* 3.2 14.1 + - + +
184D LYS* 3.0 39.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE 181 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A LEU* 4.2 18.2 - - + -
57C LEU* 3.5 38.1 - - + +
60C VAL* 3.6 25.4 - - + -
61C GLU* 3.8 23.3 - - + +
64C MET* 4.1 12.1 - - + +
177D GLN* 2.8 39.8 + - + +
178D ILE* 3.7 7.9 - - - +
179D ASP 3.2 0.2 - - - -
180D ARG* 1.3 78.0 - - - +
182D MET* 1.3 56.3 + - - +
184D LYS* 3.4 8.5 + - - +
185D ALA* 2.9 25.6 + - - +
----------------------------------------------------------
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Residues in contact with MET 182 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A LYS* 3.4 41.5 - - + +
62A GLU* 3.4 37.9 - - - +
63A LEU* 3.7 26.0 - - + -
66A ARG* 3.4 26.3 + - - +
178D ILE* 3.1 23.8 + - + +
179D ASP* 3.1 13.2 + - - +
181D ILE* 1.3 74.8 - - - +
183D GLU* 1.3 62.0 + - + +
185D ALA* 3.7 5.0 - - - +
186D ASP* 2.8 29.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 183 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179D ASP* 3.0 28.1 + - + +
180D ARG* 3.6 9.7 - - + +
182D MET* 1.3 77.9 - - + +
184D LYS* 1.3 57.6 + - + +
186D ASP* 3.3 8.1 + - - +
187D SER* 2.9 27.9 + - - -
----------------------------------------------------------
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Residues in contact with LYS 184 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C GLU* 2.8 34.6 + - + +
64C MET* 3.9 22.0 - - + -
65C ASN* 2.6 33.3 + - - +
180D ARG* 3.0 30.8 + - + +
181D ILE* 3.6 9.0 - - - +
183D GLU* 1.3 74.5 - - + +
185D ALA* 1.3 58.9 + - - +
187D SER* 3.1 8.3 + - - +
188D ASN* 2.9 34.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 185 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A LEU* 4.8 7.0 - - + -
66A ARG* 4.5 20.2 - - + +
67A ALA* 5.8 0.9 - - + +
70A LEU* 4.4 11.0 - - + +
64C MET* 3.7 22.2 - - - -
181D ILE 2.9 18.3 + - - +
182D MET* 3.8 7.2 - - - +
183D GLU 3.3 0.2 - - - -
184D LYS* 1.3 76.7 - - - +
186D ASP* 1.3 57.0 + - - +
188D ASN* 3.4 3.9 + - - +
189D LYS* 2.8 32.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 186 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A ARG* 2.7 33.1 + - - +
182D MET 2.8 18.7 + - - +
183D GLU* 3.4 9.4 - - - +
185D ALA* 1.3 75.3 - - - +
187D SER* 1.3 65.0 + - - +
189D LYS* 3.7 9.3 - - - +
190D THR* 3.0 31.7 + - - -
----------------------------------------------------------
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Residues in contact with SER 187 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C ASN* 5.1 4.5 + - - -
183D GLU 2.9 13.8 + - - -
184D LYS* 3.1 10.3 + - - -
186D ASP* 1.3 77.9 - - - +
188D ASN* 1.3 64.0 + - - +
190D THR* 3.3 7.7 + - - -
191D ARG* 3.1 35.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 188 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70A LEU* 4.3 11.4 - - + -
64C MET* 3.1 42.4 + - - +
67C ILE* 3.3 26.1 - - + +
68C ASN* 3.5 27.5 + - - +
71C MET* 5.0 1.0 - - - +
184D LYS* 2.9 19.9 + - - +
185D ALA 3.8 4.0 - - - +
187D SER* 1.3 77.5 + - - +
189D LYS* 1.3 66.0 + - - +
191D ARG* 3.3 9.1 + - - +
192D ILE* 2.9 28.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 189 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A ARG* 5.3 15.3 - - + +
69A ALA* 5.2 18.1 - - + +
70A LEU* 3.9 21.0 - - + +
185D ALA 2.8 23.2 + - - +
186D ASP* 3.7 12.8 + - - +
188D ASN* 1.3 72.9 - - - +
190D THR* 1.3 53.1 + - - +
192D ILE* 3.2 5.0 + - - +
193D ASP* 2.8 59.3 + - - +
45E GLU* 5.9 1.4 + - - -
48E ARG* 6.0 0.8 - - - +
----------------------------------------------------------
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Residues in contact with THR 190 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186D ASP* 3.0 18.5 + - - -
187D SER* 3.4 10.7 - - - -
188D ASN 3.2 0.2 - - - -
189D LYS* 1.3 77.9 - - - +
191D ARG* 1.3 64.1 + - + +
193D ASP* 3.2 8.1 + - - +
194D GLU* 2.8 60.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 191 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C ASN* 2.5 49.3 + - - +
71C MET* 3.7 19.0 - - + +
72C LYS* 2.9 37.9 - - - +
75C GLU* 2.6 41.0 + - - +
187D SER* 3.1 26.1 + - - +
188D ASN* 3.3 8.9 + - - +
190D THR* 1.3 78.6 - - + +
192D ILE* 1.3 53.2 + - - +
194D GLU* 3.8 6.6 - - - +
195D ALA* 2.7 38.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 192 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70A LEU* 3.8 24.9 - - + -
73A GLY* 3.3 34.1 - - - +
74A ALA* 4.0 7.9 - - + +
77A PHE* 4.1 12.3 - - + +
244B VAL* 4.1 23.1 - - + -
67C ILE* 4.4 8.7 - - + -
71C MET* 3.9 25.4 - - + -
188D ASN 2.9 21.9 + - - +
189D LYS* 3.6 5.2 - - - +
191D ARG* 1.3 74.0 - - - +
193D ASP* 1.3 69.1 + - - +
194D GLU 3.1 1.6 - - - -
195D ALA* 4.2 0.3 - - - +
196D ASN* 3.0 24.2 + - + +
----------------------------------------------------------
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Residues in contact with ASP 193 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A GLY* 5.2 7.6 - - - -
189D LYS* 2.8 54.1 + - - +
190D THR* 3.8 6.8 + - - +
192D ILE* 1.3 77.2 - - - +
194D GLU* 1.3 62.1 + - + +
196D ASN* 3.7 4.9 - - - +
197D GLN* 3.0 30.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 194 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C GLU* 6.0 0.2 - - - +
190D THR* 2.8 40.8 + - + +
191D ARG* 3.8 5.7 - - - +
193D ASP* 1.3 79.0 - - + +
195D ALA* 1.3 67.0 + - - +
196D ASN 2.9 2.3 + - - -
197D GLN* 3.0 18.4 + - + +
198D ARG* 3.2 38.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA 195 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PHE* 3.6 16.9 - - + -
71C MET* 3.4 22.7 - - + -
74C ALA* 4.8 2.7 - - + -
75C GLU* 4.7 5.8 + - + +
78C LEU* 3.5 23.1 - - + +
191D ARG 2.7 21.8 + - - +
192D ILE 4.2 0.4 - - - +
194D GLU* 1.3 73.5 - - - +
196D ASN* 1.3 58.4 + - - +
198D ARG* 4.7 4.2 - - - +
199D ALA* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 196 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A GLY 4.8 1.8 - - - +
76A GLN* 3.0 37.1 + - - +
77A PHE* 3.7 20.1 - - + +
80A SER* 2.8 36.0 + - - -
192D ILE* 3.0 19.5 + - + +
193D ASP* 3.7 7.4 - - - +
194D GLU 2.9 0.8 - - - -
195D ALA* 1.3 77.4 - - - +
197D GLN* 1.3 67.1 + - - +
199D ALA* 3.4 1.1 - - - +
200D THR* 2.8 38.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 197 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A GLN* 5.7 1.0 + - - -
193D ASP 3.0 20.7 + - - +
194D GLU* 3.0 9.4 + - + +
196D ASN* 1.3 82.1 + - - +
198D ARG* 1.3 70.5 + - + +
200D THR* 2.8 19.8 + - - -
201D LYS* 2.8 35.3 + - - +
38E GLN* 5.2 10.7 + - - +
----------------------------------------------------------
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Residues in contact with ARG 198 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C GLU* 3.5 37.2 + - - +
78C LEU* 3.7 36.9 - - + +
79C LYS* 5.4 9.6 - - - +
194D GLU* 3.2 39.0 + - - +
195D ALA* 4.0 3.1 - - - +
197D GLN* 1.3 79.5 - - + +
199D ALA* 1.3 66.5 + - - +
201D LYS* 3.1 21.0 + - + +
202D MET* 3.2 22.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 199 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PHE* 4.6 8.3 - - + -
80A SER* 3.9 22.7 - - - -
84A LEU* 3.9 24.6 - - + +
78C LEU* 4.4 5.4 - - + +
195D ALA 2.9 21.7 + - - +
196D ASN* 3.4 7.6 - - - +
198D ARG* 1.3 78.1 - - - +
200D THR* 1.3 61.4 + - - +
202D MET* 3.3 12.9 + - - +
203D LEU* 3.6 16.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 200 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A SER* 3.7 14.2 + - - -
196D ASN* 2.8 20.9 + - - -
197D GLN* 2.8 14.8 + - - -
199D ALA* 1.3 70.6 - - - +
201D LYS* 1.3 64.2 + - - -
203D LEU* 3.1 27.2 + - + +
204D TRP* 3.7 32.1 - - + +
34E GLU* 4.9 9.0 - - + +
38E GLN* 5.5 7.0 - - - +
----------------------------------------------------------
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Residues in contact with LYS 201 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197D GLN* 2.8 40.9 + - - +
198D ARG* 3.1 12.8 + - + +
200D THR* 1.3 72.7 - - - +
202D MET* 1.3 63.3 + - + +
203D LEU 3.2 0.9 + - - -
204D TRP* 3.5 42.6 + - + +
----------------------------------------------------------
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Residues in contact with MET 202 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84A LEU* 3.7 14.4 - - + -
87A LYS* 2.9 28.2 + - - +
88A TYR* 3.5 23.9 + - + +
78C LEU* 4.7 17.0 - - - +
81C LEU* 3.2 59.0 - - + +
198D ARG* 3.2 19.0 + - - +
199D ALA 3.6 6.3 - - - +
200D THR 3.2 0.6 - - - -
201D LYS* 1.3 74.8 - - + +
203D LEU* 1.3 56.4 + - - +
204D TRP 3.0 6.9 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il