Contacts of the helix formed by residues 110 - 156 (chain G) in PDB entry 1LWU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 110 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103G GLU* 5.2 0.4 + - - +
106G ARG* 3.0 53.4 + - - +
107G GLU* 3.3 39.1 + - - +
108G LEU 4.9 0.7 - - - +
109G GLU* 1.3 81.0 - - + +
111G ARG* 1.3 50.8 + - - +
112G ILE 2.7 4.9 + - - -
113G ILE* 2.6 11.9 + - - +
114G HIS* 2.6 37.1 + - + +
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Residues in contact with ARG 111 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96D GLU* 3.6 23.6 - - - +
97D LEU* 3.5 32.6 - - - +
100D ARG* 5.6 0.4 - - - +
107G GLU* 3.5 33.1 + - - +
108G LEU* 4.0 24.2 - - + +
110G ARG* 1.3 77.6 - - - +
112G ILE* 1.3 59.0 + - - +
114G HIS* 3.8 14.2 - - + +
115G LEU* 3.2 24.1 + - - +
89I LEU* 5.6 1.8 - - - +
92I VAL* 3.7 15.7 - - + +
96I GLU* 3.1 38.6 + - - +
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Residues in contact with ILE 112 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108G LEU* 3.2 23.0 + - + +
109G GLU* 4.4 6.5 - - - +
110G ARG 2.8 0.6 - - - -
111G ARG* 1.3 81.1 - - - +
113G ILE* 1.3 72.9 + - + +
114G HIS 3.1 1.1 - - - -
115G LEU* 3.4 10.1 + - + +
116G GLN* 3.1 21.7 + - + +
167H ILE* 4.7 25.1 - - + -
170H ARG* 5.0 20.6 - - + +
92I VAL* 3.3 35.7 - - + -
95I LEU* 6.5 0.4 - - + -
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Residues in contact with ILE 113 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109G GLU* 3.2 20.2 - - + +
110G ARG* 2.6 13.1 + - - +
112G ILE* 1.3 78.1 - - + +
114G HIS* 1.3 64.8 + - - +
116G GLN* 3.1 22.6 + - + +
117G ARG* 3.4 5.9 + - - +
191G GLU* 5.2 20.4 - - + +
170H ARG* 3.1 33.4 - - - +
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Residues in contact with HIS 114 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110G ARG* 2.6 20.5 + - + +
111G ARG* 3.9 14.1 - - + +
113G ILE* 1.3 69.6 - - - +
115G LEU* 1.3 60.4 + - - +
116G GLN 2.9 4.0 - - - -
117G ARG* 2.9 41.3 + - - +
118G ARG* 3.4 41.6 + - + +
96I GLU* 4.9 7.2 - - - -
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Residues in contact with LEU 115 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111G ARG 3.2 18.2 + - - +
112G ILE* 3.4 11.9 + - + +
114G HIS* 1.3 81.4 - - + +
116G GLN* 1.3 56.8 + - - +
117G ARG 3.4 0.2 - - - -
118G ARG* 3.5 35.2 - - + +
119G ILE* 3.2 30.5 + - + +
174H VAL* 5.7 1.6 - - + -
92I VAL* 4.1 9.6 - - + +
95I LEU* 3.3 26.2 - - + +
96I GLU* 3.1 51.1 - - + +
99I GLY* 5.4 0.9 - - - -
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Residues in contact with GLN 116 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112G ILE* 3.1 14.6 + - + +
113G ILE* 3.1 21.5 - - + +
114G HIS 2.9 0.6 - - - -
115G LEU* 1.3 77.9 - - - +
117G ARG* 1.3 67.2 + - - +
119G ILE* 3.3 9.8 + - - +
120G ASN* 3.0 30.5 + - + +
188G ARG* 4.3 21.8 - - - +
191G GLU* 4.9 21.3 + - + +
170H ARG* 5.9 5.5 + - - +
173H GLU* 5.7 6.1 + - - +
174H VAL* 3.9 23.7 - - - +
177H ARG* 5.8 2.8 - - - +
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Residues in contact with ARG 117 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113G ILE 3.4 5.6 + - - +
114G HIS* 2.9 23.7 + - - +
116G GLN* 1.3 79.2 - - - +
118G ARG* 1.3 53.1 + - + +
120G ASN* 2.6 30.5 + - - +
121G MET* 2.6 47.0 + - + +
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Residues in contact with ARG 118 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114G HIS* 3.4 42.4 + - + +
115G LEU* 3.5 29.2 - - - +
116G GLN 3.4 0.2 - - - -
117G ARG* 1.3 79.1 - - + +
119G ILE* 1.3 59.0 + - + +
120G ASN 2.9 0.7 + - - -
121G MET* 2.9 11.0 + - + +
122G GLN* 2.8 49.4 + - + +
96I GLU* 3.2 39.1 + - - +
99I GLY* 5.0 9.5 - - - +
100I VAL* 4.0 14.0 - - - +
103I ASP* 5.5 2.2 - - - +
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Residues in contact with ILE 119 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115G LEU* 3.2 34.1 + - + +
116G GLN* 3.3 12.2 + - - +
117G ARG 3.2 1.0 - - - -
118G ARG* 1.3 77.2 - - + +
120G ASN* 1.3 56.8 + - - +
122G GLN* 4.3 16.8 - - - +
123G LEU* 3.2 22.8 - - - +
174H VAL* 3.5 21.5 - - + +
177H ARG* 3.9 30.4 - - + -
178H ILE* 3.5 36.3 - - + +
182H VAL* 5.4 3.6 - - + -
95I LEU* 4.4 4.7 - - + +
99I GLY* 5.2 4.0 - - - -
102I HIS* 6.0 0.9 - - + -
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Residues in contact with ASN 120 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116G GLN* 3.0 19.1 + - + +
117G ARG* 2.6 18.2 + - - +
119G ILE* 1.3 73.4 - - - +
121G MET* 1.3 62.0 + - - +
122G GLN 3.4 0.2 - - - -
123G LEU* 3.1 29.8 - - - +
124G GLN* 3.4 18.6 + - - +
186G PHE 4.2 0.5 - - - +
187G GLU* 2.9 49.5 + - - +
188G ARG 5.2 0.2 + - - -
191G GLU* 4.4 10.5 + - - +
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Residues in contact with MET 121 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117G ARG* 2.6 49.2 + - + +
118G ARG* 3.4 12.8 - - - +
120G ASN* 1.3 75.5 - - - +
122G GLN* 1.3 57.6 + - + +
123G LEU 2.9 4.9 - - - -
124G GLN* 3.2 16.1 + - - +
125G GLN* 3.0 49.6 + - + +
103I ASP* 6.0 2.0 - - - +
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Residues in contact with GLN 122 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118G ARG* 2.8 32.9 + - - +
119G ILE* 4.3 12.6 - - - +
121G MET* 1.3 76.7 - - + +
123G LEU* 1.3 59.7 + - + +
125G GLN* 4.1 11.7 - - - +
126G LEU* 3.0 37.5 + - + +
182H VAL* 5.2 2.9 - - + -
99I GLY* 2.8 33.9 + - - -
102I HIS* 3.2 30.4 - - + +
103I ASP* 2.8 36.0 + - - +
106I ILE* 3.6 14.6 - - + -
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Residues in contact with LEU 123 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119G ILE 3.2 23.3 - - - +
120G ASN* 3.1 20.0 - - - +
121G MET 2.9 0.6 - - - -
122G GLN* 1.3 80.1 - - + +
124G GLN* 1.3 56.4 + - + +
126G LEU* 3.1 2.8 + - - +
127G THR* 2.8 37.1 + - - -
184G LEU* 3.5 35.3 - - + +
185G LYS* 4.6 3.6 - - - +
186G PHE 3.7 23.3 - - - +
187G GLU* 5.4 1.1 - - + -
177H ARG* 3.4 30.3 - - - +
182H VAL* 3.4 21.1 - - + -
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Residues in contact with GLN 124 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120G ASN* 3.8 21.9 + - - +
121G MET* 3.2 15.7 + - - +
123G LEU* 1.3 78.3 - - + +
125G GLN* 1.3 65.9 + - + +
127G THR* 3.1 17.5 + - - +
128G LEU* 3.2 19.5 + - + +
184G LEU 5.2 0.2 - - - -
187G GLU* 4.8 6.6 - - - +
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Residues in contact with GLN 125 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121G MET* 3.0 33.4 + - + +
122G GLN* 3.9 7.9 - - - +
124G GLN* 1.3 76.6 - - + +
126G LEU* 1.3 62.1 + - + +
128G LEU* 2.9 27.0 + - - +
129G LEU* 2.9 15.8 + - - +
103I ASP* 4.5 8.8 - - - +
106I ILE* 3.4 35.2 - - + +
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Residues in contact with LEU 126 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122G GLN 3.0 22.5 + - - +
123G LEU 3.1 2.4 + - - +
125G GLN* 1.3 79.9 - - - +
127G THR* 1.3 57.6 + - - +
129G LEU* 4.0 4.3 - - + -
130G GLN* 3.1 19.8 + - - +
184G LEU* 3.0 30.1 - - + +
182H VAL* 3.5 31.4 - - + -
185H SER* 3.5 9.0 - - - +
186H LEU* 3.4 24.2 - - + -
189H MET* 3.8 22.3 - - + +
102I HIS* 5.5 0.2 - - + -
106I ILE* 3.2 40.4 - - + -
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Residues in contact with THR 127 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123G LEU 2.8 7.6 + - - -
124G GLN* 3.3 13.3 - - - +
125G GLN 3.1 0.4 - - - -
126G LEU* 1.3 77.6 - - - +
128G LEU* 1.3 67.9 + - + +
130G GLN* 3.3 24.1 - - - +
131G HIS* 3.4 10.2 + - - +
182G ALA* 5.0 4.1 + - + +
184G LEU* 3.0 34.1 + - - +
185G LYS* 5.6 0.5 - - - +
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Residues in contact with LEU 128 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124G GLN* 3.2 16.5 + - + +
125G GLN* 2.9 10.2 + - - +
127G THR* 1.3 79.8 - - + +
129G LEU* 1.3 54.5 + - - +
130G GLN 2.6 6.2 + - - -
131G HIS* 2.6 32.9 + - + +
132G ASN* 2.8 25.3 + - - +
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Residues in contact with LEU 129 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125G GLN 2.9 18.0 + - - +
126G LEU* 4.2 9.6 - - + -
128G LEU* 1.3 72.8 - - - +
130G GLN* 1.3 56.5 + - - +
132G ASN* 4.0 8.3 - - + +
133G ILE* 3.0 37.8 + - + +
189H MET* 3.4 20.4 - - + -
106I ILE* 4.5 11.4 - - + +
109I LEU* 3.3 43.3 - - + -
110I SER* 4.0 28.3 - - - +
113I TRP* 4.6 20.2 - - + -
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Residues in contact with GLN 130 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126G LEU 3.1 19.8 + - - +
127G THR* 3.3 20.2 - - - +
128G LEU 2.6 4.9 + - - -
129G LEU* 1.3 76.4 - - - +
131G HIS* 1.3 58.5 + - - +
133G ILE* 3.5 4.4 + - - +
134G LYS* 3.1 24.5 + - + +
178G ALA* 3.0 28.9 + - - +
179G SER* 2.8 32.2 + - - -
181G ILE 3.4 4.2 + - - -
182G ALA* 3.2 35.5 - - - +
184G LEU* 4.5 3.8 - - + -
189H MET* 4.2 10.3 - - - -
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Residues in contact with HIS 131 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127G THR 3.4 9.1 + - - +
128G LEU* 2.6 19.2 + - + +
130G GLN* 1.3 77.8 - - + +
132G ASN* 1.3 71.8 + - - +
134G LYS* 3.1 18.2 + - + +
135G THR* 3.0 50.2 + - + +
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Residues in contact with ASN 132 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128G LEU* 2.8 32.7 + - - +
129G LEU* 4.1 9.5 - - + +
131G HIS* 1.3 83.7 + - - +
133G ILE* 1.3 56.4 + - - +
135G THR* 2.7 10.7 + - - -
136G GLN* 2.7 35.9 + - - +
113I TRP* 3.1 45.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE 133 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129G LEU* 3.0 24.1 + - + +
130G GLN* 3.8 5.4 - - - +
131G HIS 3.3 0.4 - - - -
132G ASN* 1.3 76.9 - - - +
134G LYS* 1.3 58.0 + - - +
136G GLN* 4.3 6.5 - - - -
137G VAL* 2.8 30.7 + - + +
175G GLU* 6.5 1.1 - - - -
178G ALA* 5.2 9.2 - - + -
189H MET* 3.6 36.3 - - - +
192H VAL* 3.6 31.2 - - + -
193H LEU* 3.5 34.1 - - + -
196H LEU* 5.1 1.1 - - + -
113I TRP* 4.0 8.3 - - + +
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Residues in contact with LYS 134 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130G GLN* 3.1 16.1 + - + +
131G HIS* 3.1 25.6 - - + +
132G ASN 3.0 0.2 - - - -
133G ILE* 1.3 79.1 - - - +
135G THR* 1.3 63.5 + - + +
137G VAL* 2.8 23.7 - - + +
138G SER* 3.5 8.4 + - - -
175G GLU* 5.7 4.4 + - - +
179G SER* 4.6 23.7 + - - +
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Residues in contact with THR 135 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131G HIS* 3.0 39.9 + - + +
132G ASN* 2.7 24.4 + - - -
134G LYS* 1.3 80.9 - - + +
136G GLN* 1.3 53.8 + - - +
137G VAL 3.2 1.3 - - - -
138G SER* 2.8 8.3 + - - -
139G GLN* 2.7 37.6 + - - +
113I TRP* 5.5 2.3 - - - -
117I GLN* 5.8 1.0 + - - -
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Residues in contact with GLN 136 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132G ASN 2.7 20.9 + - - +
133G ILE* 4.1 3.1 - - - +
135G THR* 1.3 71.9 + - - +
137G VAL* 1.3 58.3 + - - +
138G SER 3.0 0.2 + - - -
139G GLN* 3.1 11.3 + - - +
140G ILE* 2.8 49.7 + - + +
193H LEU* 3.4 19.8 - - - +
196H LEU* 3.4 18.4 - - + +
113I TRP* 3.0 27.4 + - - +
116I ASN* 2.9 34.8 + - - +
117I GLN* 3.3 26.2 + - - +
120I VAL* 5.8 0.7 - - + -
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Residues in contact with VAL 137 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133G ILE* 2.8 23.7 + - + +
134G LYS* 2.8 30.7 - - + +
136G GLN* 1.3 77.9 - - - +
138G SER* 1.3 61.0 + - - +
140G ILE* 4.1 1.6 - - - +
141G LEU* 3.5 20.4 + - - +
171G ASN* 4.5 20.4 - - + +
175G GLU* 4.6 23.3 - - + +
192H VAL* 5.0 6.7 - - + -
196H LEU* 4.4 26.1 - - + +
----------------------------------------------------------
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Residues in contact with SER 138 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134G LYS* 3.6 13.0 - - - -
135G THR* 2.8 12.8 + - - -
137G VAL* 1.3 82.2 - - - +
139G GLN* 1.3 66.8 + - - -
141G LEU* 3.0 17.0 + - - +
142G ARG* 3.0 32.7 + - - +
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Residues in contact with GLN 139 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135G THR* 2.7 17.5 + - - +
136G GLN* 3.7 8.4 - - - +
138G SER* 1.3 72.1 - - - +
140G ILE* 1.3 64.1 + - - +
142G ARG* 3.1 25.2 + - + +
143G VAL* 3.1 14.3 + - + +
117I GLN* 3.7 23.8 + - - +
120I VAL* 3.1 37.5 - - + +
121I THR* 5.3 0.5 + - - -
124I GLN* 4.9 13.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 140 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136G GLN* 2.8 39.8 + - + +
137G VAL 4.2 4.0 - - - +
139G GLN* 1.3 72.2 - - - +
141G LEU* 1.3 59.1 + - - +
143G VAL* 3.5 4.5 + - - +
144G GLU* 3.0 25.1 + - - +
196H LEU* 4.3 21.8 - - + -
199H LYS* 3.9 29.6 - - + +
200H MET* 3.0 47.8 - - + -
203H MET* 4.3 3.5 - - + +
120I VAL* 3.5 21.3 - - + -
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Residues in contact with LEU 141 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137G VAL 3.5 12.8 + - - +
138G SER* 3.0 11.2 + - - +
140G ILE* 1.3 76.0 - - - +
142G ARG* 1.3 67.0 + - - +
144G GLU* 3.0 25.2 - - + +
145G VAL* 3.2 8.8 + - - +
166G LEU* 5.6 7.6 - - + -
167G ASP 6.0 1.6 - - - +
171G ASN* 5.7 4.9 - - + +
172G LEU* 5.8 8.7 - - + -
175G GLU* 5.9 2.7 - - - +
199H LYS* 4.0 20.9 - - - +
446H GLN* 6.2 2.5 - - - +
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Residues in contact with ARG 142 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138G SER* 3.0 34.0 + - - +
139G GLN* 3.3 16.6 - - + +
141G LEU* 1.3 74.6 - - - +
143G VAL* 1.3 67.4 + - + +
145G VAL* 2.9 14.4 + - - +
146G ASP* 2.9 34.3 + - - +
445H GLU* 2.6 30.7 + - - +
446H GLN* 4.4 11.9 + - - +
447H ALA 4.5 7.0 + - - -
448H ASP* 5.1 13.0 - - - +
124I GLN* 6.2 1.8 - - - +
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Residues in contact with VAL 143 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139G GLN* 3.1 11.0 + - + +
140G ILE* 3.9 8.3 - - - +
142G ARG* 1.3 79.0 - - + +
144G GLU* 1.3 56.4 - - - +
146G ASP* 3.0 8.6 + - + +
147G ILE* 2.7 60.6 + - + +
203H MET* 4.5 3.1 - - + -
120I VAL* 4.6 14.6 - - + +
123I LEU* 4.2 19.7 - - + +
124I GLN* 3.7 42.6 - - - +
127I LEU* 5.3 2.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 144 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140G ILE 3.0 14.7 + - - +
141G LEU* 3.0 22.2 - - + +
143G VAL* 1.3 76.3 - - - +
145G VAL* 1.3 54.4 + - - +
147G ILE* 4.0 2.4 - - - +
148G ASP* 3.2 23.2 + - - +
164G TYR* 2.5 36.8 + - - -
165G ARG* 5.1 0.9 - - - +
166G LEU* 3.1 37.1 - - + +
199H LYS* 3.8 34.4 - - + +
202H ARG* 5.8 0.2 + - - -
203H MET* 3.4 21.5 - - - +
----------------------------------------------------------
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Residues in contact with VAL 145 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141G LEU 3.2 6.2 + - - +
142G ARG* 2.9 18.1 + - - +
144G GLU* 1.3 78.3 - - - +
146G ASP* 1.3 74.7 + - - +
147G ILE 3.2 0.4 - - - -
148G ASP* 3.1 15.4 + - - +
149G VAL* 2.8 41.2 + - + +
166G LEU* 4.7 10.5 - - + -
435H ARG* 4.0 8.5 - - - +
437H TYR* 5.0 12.6 - - + -
446H GLN* 4.3 33.4 - - + +
----------------------------------------------------------
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Residues in contact with ASP 146 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142G ARG* 2.9 29.3 + - - +
143G VAL* 3.6 7.8 - - - +
145G VAL* 1.3 78.1 - - - +
147G ILE* 1.3 58.6 + - - +
149G VAL* 3.2 5.0 + - - +
150G ALA* 2.8 29.5 + - - +
435H ARG* 3.2 31.6 + - - +
446H GLN 4.7 1.4 - - - +
448H ASP* 4.1 19.9 - - - +
124I GLN* 4.9 3.8 - - - +
127I LEU* 3.3 27.7 - - + +
131I ARG* 4.4 7.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 147 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143G VAL* 2.7 45.0 + - + +
144G GLU* 4.0 4.3 - - - +
146G ASP* 1.3 72.9 - - - +
148G ASP* 1.3 56.5 + - - +
150G ALA* 4.2 5.8 - - - -
151G LEU* 2.9 53.0 + - + +
164G TYR* 4.9 12.1 - - + -
203H MET* 4.2 12.3 - - + +
207H ILE* 3.2 37.7 - - + -
123I LEU* 4.1 15.9 - - + +
127I LEU* 3.9 13.5 - - + -
130I ILE* 6.2 0.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 148 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144G GLU 3.2 14.7 + - - +
145G VAL* 3.1 17.8 + - - +
147G ILE* 1.3 82.7 - - - +
149G VAL* 1.3 65.2 + - - +
151G LEU* 4.2 1.9 - - - +
152G ARG* 2.9 47.6 + - - +
164G TYR* 3.9 34.3 - - + +
165G ARG 4.4 0.2 - - - +
166G LEU* 3.6 25.1 - - + +
438H TRP* 4.8 6.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 149 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145G VAL* 2.8 25.4 + - + +
146G ASP* 3.6 6.5 - - - +
148G ASP* 1.3 82.1 - - - +
150G ALA* 1.3 65.0 + - - +
152G ARG* 3.6 20.4 + - - +
153G ALA* 3.7 8.0 + - - +
279H GLY* 4.7 2.6 - - - +
435H ARG* 4.1 34.3 - - + +
436H TYR* 4.6 27.8 - - + +
437H TYR* 5.0 9.2 - - + -
438H TRP 6.1 0.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 150 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146G ASP 2.8 16.8 + - - +
147G ILE* 3.7 4.3 - - - +
149G VAL* 1.3 74.9 - - - +
151G LEU* 1.3 58.2 + - - +
153G ALA* 2.5 40.7 + - - +
154G CYS* 3.7 4.2 + - - -
127I LEU* 3.6 24.7 - - + -
130I ILE* 4.4 12.1 - - + -
131I ARG* 4.5 17.5 - - + +
134I CYS* 4.9 0.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU 151 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147G ILE* 2.9 40.8 + - + +
148G ASP 4.2 3.1 - - - +
150G ALA* 1.3 71.9 - - + +
152G ARG* 1.3 57.1 + - - +
154G CYS* 2.8 31.3 + - - +
161G TYR* 3.8 10.6 - - + -
162G LEU* 4.8 7.4 - - + -
163G GLU 5.9 1.8 - - - -
164G TYR* 4.0 23.8 - - + +
206H ALA* 3.9 24.5 - - + -
207H ILE* 4.3 14.4 - - + -
210H GLN* 4.1 24.5 + - + +
130I ILE* 4.0 26.2 - - + -
----------------------------------------------------------
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Residues in contact with ARG 152 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148G ASP* 2.9 45.9 + - - +
149G VAL* 3.7 22.0 + - - +
150G ALA 2.9 1.0 + - - -
151G LEU* 1.3 78.2 - - - +
153G ALA* 1.3 58.0 + - - +
154G CYS 3.3 0.7 + - - -
155G LYS* 3.3 19.0 + - + +
161G TYR* 3.8 22.2 + - + +
163G GLU* 5.7 1.4 + - - -
278H ASP* 4.7 2.9 - - + +
279H GLY* 2.8 44.6 - - - +
280H SER* 3.6 1.0 - - - +
436H TYR* 3.5 25.0 + - - +
438H TRP* 3.6 44.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 153 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149G VAL 3.7 5.0 + - - +
150G ALA* 2.5 26.7 + - - +
152G ARG* 1.3 73.3 - - - +
154G CYS* 1.3 57.3 + - - +
155G LYS 3.3 0.2 - - - -
156G GLY 3.4 1.2 + - - -
157G SER* 3.8 3.1 + - - -
279H GLY 3.1 12.9 + - - +
280H SER 3.0 20.4 - - - +
281H SER* 4.7 0.6 - - - -
282H ASN* 4.7 18.8 - - + +
131I ARG* 5.7 5.4 - - + +
134I CYS* 3.6 28.0 - - + +
----------------------------------------------------------
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Residues in contact with CYS 154 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150G ALA 4.2 1.3 - - - -
151G LEU* 2.8 22.4 + - - +
153G ALA* 1.3 73.0 - - - +
155G LYS* 1.3 65.1 + - - +
156G GLY 2.9 2.7 - - - -
157G SER* 2.8 13.6 + - - +
158G CYS* 2.9 24.5 + - - +
161G TYR* 4.3 2.2 - - - +
210H GLN* 3.7 30.1 - - - +
130I ILE* 4.0 10.1 - - - -
134I CYS* 2.0 48.5 - - - -
----------------------------------------------------------
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Residues in contact with LYS 155 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152G ARG* 3.3 16.8 + - + +
153G ALA 3.3 0.6 - - - -
154G CYS* 1.3 79.4 - - - +
156G GLY* 1.3 58.0 + - - +
157G SER 3.5 1.9 + - - -
158G CYS 4.1 9.4 - - - +
161G TYR* 3.4 55.5 - - + +
218H CYS* 4.4 4.5 - - - +
278H ASP* 3.9 29.7 + - + +
280H SER* 4.2 12.1 - - - -
299H PHE* 5.0 15.9 - - + -
138I CYS* 5.0 0.7 - - - -
----------------------------------------------------------
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Residues in contact with GLY 156 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153G ALA 3.4 4.2 + - - -
154G CYS 2.9 0.6 - - - -
155G LYS* 1.3 80.9 - - - +
157G SER* 1.3 58.0 + - - +
218H CYS* 3.4 11.3 - - - -
280H SER* 3.3 26.1 + - - +
296H ASN* 2.8 30.1 + - - -
299H PHE* 4.2 6.3 - - - -
136I ARG 3.9 0.2 - - - +
137I PRO* 3.6 4.7 - - - +
138I CYS 3.4 4.5 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il