Contacts of the helix formed by residues 110 - 156 (chain J) in PDB entry 1LWU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 110 (chain J).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103J GLU* 5.2 0.6 + - - +
106J ARG* 3.0 53.8 + - - +
107J GLU* 3.3 38.7 + - - +
108J LEU 4.9 0.2 - - - +
109J GLU* 1.3 78.9 - - + +
111J ARG* 1.3 50.9 + - - +
112J ILE 2.7 4.4 + - - -
113J ILE* 2.7 11.2 + - - +
114J HIS* 2.6 37.8 + - + +
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Residues in contact with ARG 111 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A GLU* 3.0 41.4 + - - +
97A LEU* 3.2 33.7 - - - +
100A ARG* 4.9 0.8 - - - +
107J GLU* 3.5 31.7 + - - +
108J LEU* 4.0 17.4 - - + +
110J ARG* 1.3 77.4 - - - +
112J ILE* 1.3 58.9 + - - +
114J HIS* 3.8 13.9 - - + +
115J LEU* 3.2 24.8 + - - +
89L LEU* 5.6 0.4 - - - +
92L VAL* 3.7 20.0 - - + +
96L GLU* 3.1 35.8 + - - +
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Residues in contact with ILE 112 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108J LEU* 3.2 22.6 + - + +
109J GLU* 4.4 5.8 - - - +
110J ARG 2.8 0.6 - - - -
111J ARG* 1.3 79.8 - - - +
113J ILE* 1.3 72.3 + - + +
114J HIS 3.1 1.6 - - - -
115J LEU* 3.5 11.0 + - + +
116J GLN* 3.1 21.1 + - - +
166K GLU 5.9 0.4 - - - +
167K ILE* 4.5 27.6 - - + -
170K ARG* 5.4 12.8 - - + +
92L VAL* 3.3 34.8 - - + -
95L LEU* 6.5 0.7 - - + -
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Residues in contact with ILE 113 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109J GLU* 3.2 20.4 - - + +
110J ARG* 2.7 11.8 + - - +
112J ILE* 1.3 79.6 - - + +
114J HIS* 1.3 64.9 + - - +
116J GLN* 3.2 21.1 - - + +
117J ARG* 3.4 6.4 + - - +
191J GLU* 4.8 32.8 - - + +
170K ARG* 4.4 19.7 - - - +
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Residues in contact with HIS 114 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110J ARG 2.6 18.8 + - - +
111J ARG* 3.9 14.4 - - + +
113J ILE* 1.3 69.7 - - - +
115J LEU* 1.3 59.5 + - - +
116J GLN 2.9 4.5 - - - -
117J ARG* 2.9 40.5 + - - +
118J ARG* 3.5 42.3 + - + +
96L GLU* 4.9 7.2 - - - -
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Residues in contact with LEU 115 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111J ARG 3.2 17.4 + - - +
112J ILE* 3.5 12.8 + - + +
113J ILE 3.5 0.2 - - - -
114J HIS* 1.3 80.7 - - + +
116J GLN* 1.3 57.9 + - - +
118J ARG* 3.5 35.9 - - + +
119J ILE* 3.2 32.5 + - + +
174K VAL* 6.1 0.2 - - + -
92L VAL* 4.1 9.2 - - + +
95L LEU* 3.3 26.2 - - + +
96L GLU* 3.1 51.8 - - + +
99L GLY* 5.4 0.7 - - - -
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Residues in contact with GLN 116 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112J ILE* 3.1 13.0 + - + +
113J ILE* 3.2 19.7 - - + +
114J HIS 2.9 0.6 - - - -
115J LEU* 1.3 76.9 - - - +
117J ARG* 1.3 66.3 + - - +
119J ILE* 3.2 14.7 + - - +
120J ASN* 3.0 30.9 + - + +
187J GLU* 4.9 3.3 - - + +
188J ARG* 3.5 34.1 - - - +
191J GLU* 4.5 20.1 - - + +
174K VAL* 4.3 22.2 - - - +
177K ARG* 5.8 2.8 - - - +
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Residues in contact with ARG 117 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113J ILE 3.4 4.9 + - - +
114J HIS* 2.9 26.3 + - - +
116J GLN* 1.3 78.5 - - - +
118J ARG* 1.3 52.4 + - + +
120J ASN* 2.6 30.1 + - - +
121J MET* 2.6 46.7 + - + +
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Residues in contact with ARG 118 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114J HIS* 3.5 42.0 + - + +
115J LEU* 3.5 30.2 - - - +
116J GLN 3.4 0.4 - - - -
117J ARG* 1.3 79.3 - - + +
119J ILE* 1.3 58.5 + - + +
120J ASN 2.9 0.7 + - - -
121J MET* 2.9 11.3 + - - +
122J GLN* 2.8 50.1 + - + +
96L GLU* 3.2 38.7 + - - +
99L GLY* 5.0 9.5 - - - +
100L VAL* 4.0 13.8 - - - +
103L ASP* 5.5 2.2 - - - +
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Residues in contact with ILE 119 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115J LEU* 3.2 34.9 + - + +
116J GLN* 3.2 14.5 + - - +
117J ARG 3.2 0.8 - - - -
118J ARG* 1.3 76.2 - - + +
120J ASN* 1.3 56.0 + - - +
122J GLN* 4.3 15.9 - - - +
123J LEU* 3.1 23.3 - - + +
174K VAL* 4.0 17.0 - - + -
177K ARG* 3.8 31.2 - - + -
178K ILE* 3.5 36.8 - - + +
182K VAL* 5.4 3.1 - - + -
95L LEU* 4.4 3.6 - - + +
99L GLY* 5.2 4.0 - - - -
102L HIS* 6.0 0.9 - - + -
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Residues in contact with ASN 120 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116J GLN* 3.0 16.8 + - + +
117J ARG* 2.6 17.1 + - - +
119J ILE* 1.3 73.7 - - - +
121J MET* 1.3 60.7 + - - +
122J GLN 3.4 0.4 - - - -
123J LEU* 3.1 24.3 - - - +
124J GLN* 3.4 22.1 + - - +
186J PHE 3.7 5.0 - - - +
187J GLU* 2.7 57.8 + - - +
191J GLU* 5.5 3.1 + - - -
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Residues in contact with MET 121 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117J ARG* 2.6 50.0 + - + +
118J ARG* 3.4 12.1 - - - +
120J ASN* 1.3 75.0 - - - +
122J GLN* 1.3 56.8 + - + +
123J LEU 2.9 5.3 + - - -
124J GLN* 3.2 15.0 + - - +
125J GLN* 2.9 49.8 + - + +
103L ASP* 6.0 2.0 - - - +
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Residues in contact with GLN 122 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118J ARG* 2.8 32.9 + - - +
119J ILE* 4.3 13.2 - - - +
121J MET* 1.3 76.7 - - + +
123J LEU* 1.3 59.0 + - + +
125J GLN* 3.9 13.0 - - - +
126J LEU* 3.0 36.9 + - + +
182K VAL* 5.1 4.0 - - + +
99L GLY* 2.8 32.4 + - - +
102L HIS* 3.2 30.5 - - + +
103L ASP* 2.8 37.3 + - - +
106L ILE* 3.6 14.6 - - + -
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Residues in contact with LEU 123 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119J ILE 3.1 24.2 - - - +
120J ASN* 3.1 17.3 - - - +
121J MET 2.9 0.2 - - - -
122J GLN* 1.3 80.1 - - + +
124J GLN* 1.3 61.0 + - + +
126J LEU 3.2 2.1 + - - -
127J THR* 2.8 31.9 + - - -
184J LEU* 2.9 33.2 - - + +
185J LYS* 4.9 0.4 - - - -
186J PHE 3.1 30.1 - - - +
187J GLU* 5.1 0.2 - - - -
177K ARG* 3.4 32.3 - - - +
182K VAL* 3.4 19.7 - - + -
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Residues in contact with GLN 124 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120J ASN* 3.4 22.9 + - - +
121J MET* 3.2 15.1 + - - +
123J LEU* 1.3 78.3 - - + +
125J GLN* 1.3 66.6 + - + +
127J THR* 3.1 17.0 + - - -
128J LEU* 3.2 20.4 + - + +
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Residues in contact with GLN 125 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121J MET* 2.9 39.4 + - + +
122J GLN* 3.9 7.4 - - - +
124J GLN* 1.3 76.3 - - + +
126J LEU* 1.3 63.7 + - + +
128J LEU* 2.9 27.8 + - - +
129J LEU* 2.9 15.9 + - - +
103L ASP* 4.5 8.9 - - - +
106L ILE* 3.5 34.6 - - + +
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Residues in contact with LEU 126 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122J GLN 3.0 21.9 + - - +
123J LEU 3.2 1.8 + - - +
125J GLN* 1.3 80.7 - - - +
127J THR* 1.3 56.8 + - - +
129J LEU* 4.0 4.0 - - + -
130J GLN* 3.1 20.1 + - - +
184J LEU* 2.8 31.9 - - + +
182K VAL* 3.5 30.3 - - + -
185K SER* 3.5 9.4 - - - +
186K LEU* 3.4 24.0 - - + -
189K MET* 3.8 21.5 - - + +
102L HIS* 5.4 0.2 - - + -
106L ILE* 3.2 40.4 - - + -
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Residues in contact with THR 127 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123J LEU 2.8 15.7 + - - -
124J GLN* 3.4 13.5 - - - +
125J GLN 3.0 0.6 + - - -
126J LEU* 1.3 78.0 - - - +
128J LEU* 1.3 68.0 + - + +
130J GLN* 3.4 24.6 - - - +
131J HIS* 3.4 10.2 + - - +
182J ALA* 4.7 5.4 + - + +
184J LEU* 3.2 23.9 + - - +
185J LYS* 4.8 3.6 - - - +
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Residues in contact with LEU 128 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124J GLN* 3.5 16.4 - - + +
125J GLN* 2.9 10.6 + - - +
127J THR* 1.3 81.1 - - + +
129J LEU* 1.3 54.5 + - - +
130J GLN 2.6 5.8 + - - -
131J HIS* 2.6 32.4 + - + +
132J ASN* 2.8 24.8 + - - +
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Residues in contact with LEU 129 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125J GLN 2.9 13.9 + - - +
126J LEU* 4.2 9.9 - - + -
128J LEU* 1.3 75.6 - - - +
130J GLN* 1.3 56.9 + - - +
132J ASN* 3.9 9.2 - - + +
133J ILE* 3.0 38.9 + - + +
189K MET* 3.4 28.5 - - + -
106L ILE* 4.5 11.7 - - + +
109L LEU* 3.4 34.5 - - + -
110L SER* 4.0 27.6 - - - +
113L TRP* 4.6 19.1 - - + -
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Residues in contact with GLN 130 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126J LEU 3.1 19.3 + - - +
127J THR* 3.4 18.8 - - - +
128J LEU 2.6 4.6 + - - -
129J LEU* 1.3 76.0 - - - +
131J HIS* 1.3 59.7 + - - +
133J ILE* 3.5 4.8 + - - +
134J LYS* 3.1 24.4 + - + +
178J ALA* 3.0 28.0 + - - +
179J SER* 2.7 31.5 + - - -
181J ILE 3.4 3.8 + - - -
182J ALA* 3.2 37.6 - - - +
184J LEU* 4.4 3.4 - - + -
189K MET* 4.1 10.7 - - - +
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Residues in contact with HIS 131 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127J THR 3.4 8.7 + - - +
128J LEU* 2.6 19.5 + - + +
130J GLN* 1.3 76.7 - - + +
132J ASN* 1.3 71.6 + - - +
134J LYS* 3.1 17.6 + - + +
135J THR* 2.9 50.4 + - + +
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Residues in contact with ASN 132 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128J LEU* 2.8 28.3 + - - +
129J LEU* 4.1 9.2 - - + +
131J HIS* 1.3 89.0 + - - +
133J ILE* 1.3 57.9 + - - +
135J THR* 2.8 9.3 + - - -
136J GLN* 2.7 36.0 + - - +
113L TRP* 3.2 46.7 + - + +
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Residues in contact with ILE 133 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129J LEU* 3.0 24.7 + - + +
130J GLN* 3.8 4.9 - - - +
132J ASN* 1.3 77.4 - - - +
134J LYS* 1.3 57.1 + - - +
136J GLN* 4.3 6.5 - - - -
137J VAL* 2.8 30.2 + - + +
175J GLU* 6.5 0.7 - - - -
178J ALA* 5.2 9.6 - - + -
189K MET* 3.6 36.8 - - - +
192K VAL* 3.6 30.7 - - + -
193K LEU* 3.5 33.4 - - + -
196K LEU* 5.1 1.3 - - + -
113L TRP* 4.0 8.1 - - + -
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Residues in contact with LYS 134 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130J GLN* 3.1 16.3 + - + +
131J HIS* 3.1 24.0 - - + +
132J ASN 3.0 0.6 - - - -
133J ILE* 1.3 78.3 - - - +
135J THR* 1.3 62.6 + - + +
137J VAL* 2.9 22.5 - - + +
138J SER* 3.5 8.7 + - - -
175J GLU* 5.7 4.5 + - - +
179J SER* 4.6 23.9 + - - +
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Residues in contact with THR 135 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131J HIS* 2.9 39.3 + - + +
132J ASN* 2.8 24.1 + - - -
134J LYS* 1.3 81.1 - - + +
136J GLN* 1.3 54.6 + - - +
137J VAL 3.2 1.1 - - - -
138J SER* 2.8 8.8 + - - -
139J GLN* 2.7 37.2 + - - +
113L TRP* 5.5 1.6 - - - -
117L GLN* 5.8 1.6 + - - -
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Residues in contact with GLN 136 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132J ASN 2.7 20.5 + - - +
133J ILE* 4.1 2.9 - - - +
135J THR* 1.3 74.2 + - - +
137J VAL* 1.3 55.3 + - - +
138J SER 3.0 0.2 + - - -
139J GLN* 3.1 11.3 + - - +
140J ILE* 2.7 52.2 + - + +
193K LEU* 3.5 19.6 - - - +
196K LEU* 3.3 19.5 - - + +
113L TRP* 2.9 26.8 + - - +
116L ASN* 2.9 33.8 + - - +
117L GLN* 3.3 25.3 + - - +
120L VAL* 5.8 0.7 - - + -
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Residues in contact with VAL 137 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133J ILE* 2.8 22.3 + - + +
134J LYS* 2.9 31.0 - - + +
136J GLN* 1.3 76.4 - - - +
138J SER* 1.3 60.7 + - - +
140J ILE* 4.1 1.6 - - - +
141J LEU* 3.4 20.6 + - - +
171J ASN* 4.5 20.4 - - + +
175J GLU* 4.6 22.4 - - + +
192K VAL* 5.0 7.2 - - + -
196K LEU* 4.3 27.7 - - + +
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Residues in contact with SER 138 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134J LYS* 3.6 12.3 - - - -
135J THR* 2.8 12.7 + - - -
137J VAL* 1.3 80.9 - - - +
139J GLN* 1.3 65.3 + - - -
141J LEU* 3.0 16.8 + - - +
142J ARG* 3.0 33.6 + - - +
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Residues in contact with GLN 139 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135J THR* 2.7 17.6 + - - +
136J GLN* 3.6 9.1 - - - +
138J SER* 1.3 73.1 + - - +
140J ILE* 1.3 62.9 + - - +
142J ARG* 3.0 25.0 + - + +
143J VAL* 3.1 14.3 + - + +
117L GLN* 3.7 24.2 + - - +
120L VAL* 3.1 36.2 - - + +
121L THR* 5.3 0.9 + - - -
124L GLN* 4.9 13.9 + - - +
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Residues in contact with ILE 140 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136J GLN* 2.7 37.8 + - + +
137J VAL 4.1 4.9 - - - +
139J GLN* 1.3 72.6 - - - +
141J LEU* 1.3 57.8 + - - +
143J VAL* 3.5 4.1 + - + +
144J GLU* 2.9 26.3 + - - +
196K LEU* 4.4 21.1 - - + -
199K LYS* 3.9 28.7 - - + +
200K MET* 3.1 47.3 - - + -
203K MET* 4.3 3.7 - - + +
120L VAL* 3.4 21.5 - - + -
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Residues in contact with LEU 141 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137J VAL 3.4 12.1 + - - +
138J SER* 3.0 11.9 + - - +
140J ILE* 1.3 76.8 - - - +
142J ARG* 1.3 64.9 + - - +
144J GLU* 3.0 23.8 - - + +
145J VAL* 3.2 10.2 + - - +
166J LEU* 5.5 8.3 - - + -
167J ASP 6.0 1.8 - - - +
171J ASN* 5.7 4.0 - - + +
172J LEU* 5.8 8.7 - - + -
175J GLU* 5.9 2.7 - - - +
199K LYS* 4.1 21.5 - - - +
445K GLU* 6.2 4.5 - - + -
446K GLN* 5.6 13.5 - - + +
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Residues in contact with ARG 142 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138J SER* 3.0 32.6 + - - +
139J GLN* 3.0 17.6 + - - +
141J LEU* 1.3 73.6 - - - +
143J VAL* 1.3 68.6 + - + +
145J VAL* 2.9 13.2 + - - +
146J ASP* 2.9 34.6 + - - +
445K GLU* 2.8 30.0 + - - +
446K GLN* 4.3 8.4 + - - +
447K ALA 3.9 12.9 + - - +
448K ASP* 4.6 19.7 + - - +
124L GLN* 6.2 2.0 - - - +
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Residues in contact with VAL 143 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139J GLN* 3.1 10.4 + - + +
140J ILE* 3.8 9.0 - - + +
142J ARG* 1.3 80.2 - - + +
144J GLU* 1.3 64.8 - - - +
146J ASP* 3.0 8.2 + - - +
147J ILE* 2.7 53.2 + - + +
203K MET* 4.6 2.2 - - + -
120L VAL* 4.6 14.8 - - + +
123L LEU* 4.1 20.0 - - + +
124L GLN* 3.7 41.3 - - - +
127L LEU* 5.3 2.2 - - + -
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Residues in contact with GLU 144 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140J ILE 2.9 13.2 + - - +
141J LEU* 3.0 22.7 - - + +
143J VAL* 1.3 76.4 - - - +
145J VAL* 1.3 55.5 + - - +
147J ILE* 4.0 2.1 - - - +
148J ASP* 3.2 23.6 + - - +
164J TYR* 2.5 36.6 + - - -
165J ARG* 5.7 0.9 - - - +
166J LEU* 3.1 37.5 - - + +
199K LYS* 3.7 33.3 - - + +
202K ARG* 5.8 0.2 + - - -
203K MET* 3.3 21.3 - - - +
----------------------------------------------------------
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Residues in contact with VAL 145 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141J LEU 3.2 6.0 + - - +
142J ARG* 2.9 16.9 + - - +
144J GLU* 1.3 78.0 - - + +
146J ASP* 1.3 68.2 + - - +
148J ASP* 3.1 15.7 + - + +
149J VAL* 2.8 34.7 + - + +
166J LEU* 4.7 10.5 - - + -
435K ARG* 3.4 18.4 - - - +
437K TYR* 4.3 23.8 - - + -
446K GLN* 3.7 36.1 - - + +
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Residues in contact with ASP 146 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142J ARG* 2.9 29.1 + - - +
143J VAL* 3.0 7.8 + - - +
145J VAL* 1.3 77.7 - - - +
147J ILE* 1.3 54.2 + - - +
149J VAL* 3.2 3.5 + - - +
150J ALA* 2.8 35.3 + - - +
435K ARG* 3.0 33.6 + - - +
446K GLN 4.7 0.9 - - - +
448K ASP* 3.7 22.0 - - - +
124L GLN* 4.9 3.6 - - - +
127L LEU* 3.3 28.1 - - + +
131L ARG* 4.4 7.6 + - - +
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Residues in contact with ILE 147 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143J VAL* 2.7 45.3 + - + +
144J GLU* 4.0 4.3 - - - +
146J ASP* 1.3 71.6 - - - +
148J ASP* 1.3 56.8 + - - +
150J ALA* 4.2 5.8 - - - -
151J LEU* 2.9 52.4 + - + +
164J TYR* 4.9 11.9 - - + -
203K MET* 4.2 12.3 - - + +
206K ALA* 5.3 0.2 - - + -
207K ILE* 3.2 38.1 - - + -
123L LEU* 4.1 15.3 - - + +
127L LEU* 3.8 14.1 - - + -
130L ILE* 6.2 0.4 - - + -
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Residues in contact with ASP 148 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144J GLU 3.2 13.6 + - - +
145J VAL* 3.1 19.7 + - - +
147J ILE* 1.3 80.9 - - - +
149J VAL* 1.3 64.2 + - - +
151J LEU* 4.3 1.6 - - - +
152J ARG* 2.9 47.3 + - - +
164J TYR* 3.9 34.9 - - + +
165J ARG 4.4 0.2 - - - +
166J LEU* 3.6 24.4 - - + +
437K TYR* 5.9 0.2 - - - -
438K TRP* 4.6 8.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL 149 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145J VAL* 2.8 22.2 + - + +
146J ASP* 3.6 7.9 - - - +
148J ASP* 1.3 82.0 - - - +
150J ALA* 1.3 65.8 + - - +
152J ARG* 3.6 20.0 + - - +
153J ALA* 3.6 8.0 + - - +
279K GLY* 4.6 2.1 - - - +
435K ARG* 3.8 41.7 - - + +
436K TYR* 4.4 23.1 - - + +
437K TYR* 4.9 8.5 - - + -
----------------------------------------------------------
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Residues in contact with ALA 150 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146J ASP 2.8 20.0 + - - +
147J ILE* 3.6 3.8 - - - +
149J VAL* 1.3 72.3 - - - +
151J LEU* 1.3 57.7 + - + +
153J ALA* 2.5 40.1 + - - +
154J CYS* 3.7 4.7 + - - -
127L LEU* 3.6 25.1 - - + -
130L ILE* 4.4 11.7 - - + -
131L ARG* 4.5 19.1 - - + +
134L CYS* 4.9 0.3 - - - +
----------------------------------------------------------
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Residues in contact with LEU 151 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147J ILE* 2.9 40.3 + - + +
148J ASP 4.3 2.2 - - - +
150J ALA* 1.3 72.1 - - + +
152J ARG* 1.3 57.7 + - - +
154J CYS* 2.8 30.8 + - - +
161J TYR* 3.9 10.3 - - + -
162J LEU* 4.8 6.7 - - + -
163J GLU 5.4 2.5 - - - +
164J TYR* 4.0 23.1 - - + -
206K ALA* 3.9 24.7 - - + -
207K ILE* 4.3 13.2 - - + -
210K GLN* 4.0 25.0 + - + +
130L ILE* 4.0 26.5 - - + -
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Residues in contact with ARG 152 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148J ASP* 2.9 45.2 + - - +
149J VAL* 3.7 19.1 + - - +
150J ALA 2.9 1.0 + - - -
151J LEU* 1.3 76.9 - - - +
153J ALA* 1.3 59.4 + - - +
154J CYS 3.3 0.5 + - - -
155J LYS* 3.3 13.7 + - + +
161J TYR* 3.8 24.0 + - + +
163J GLU* 5.7 1.0 + - - -
278K ASP* 4.3 3.4 - - + +
279K GLY* 2.5 48.2 - - - +
280K SER* 3.4 3.9 - - - +
436K TYR* 2.9 30.9 + - - +
438K TRP* 3.4 46.5 - - - +
----------------------------------------------------------
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Residues in contact with ALA 153 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149J VAL 3.6 4.4 + - - +
150J ALA* 2.5 26.2 + - - +
152J ARG* 1.3 72.9 - - - +
154J CYS* 1.3 56.9 + - - +
156J GLY 3.4 1.4 + - - -
157J SER* 3.8 2.9 + - - -
279K GLY 3.0 12.2 + - - +
280K SER 2.9 20.8 - - - +
281K SER* 4.6 0.8 - - - -
282K ASN* 4.6 20.6 - - + +
131L ARG* 5.7 4.9 - - + +
134L CYS* 3.6 27.1 - - + +
----------------------------------------------------------
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Residues in contact with CYS 154 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150J ALA 4.1 1.3 - - - -
151J LEU* 2.8 26.5 + - - +
153J ALA* 1.3 74.2 - - - +
155J LYS* 1.3 64.6 + - - +
156J GLY 2.9 2.2 - - - -
157J SER* 2.8 13.2 + - - +
158J CYS* 2.9 24.1 + - - +
161J TYR* 4.3 2.4 - - - +
210K GLN* 3.7 29.6 - - + +
130L ILE* 4.0 7.0 - - - -
134L CYS* 2.0 47.6 - - - -
----------------------------------------------------------
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Residues in contact with LYS 155 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152J ARG* 3.3 16.6 + - + +
154J CYS* 1.3 79.5 - - - +
156J GLY* 1.3 59.5 + - - +
157J SER 3.5 1.6 + - - -
158J CYS 4.1 9.2 - - - +
161J TYR* 3.4 56.9 - - + +
218K CYS* 4.6 3.6 - - - +
278K ASP* 3.6 33.3 + - + +
280K SER* 4.0 12.1 - - - -
299K PHE* 4.9 17.5 - - + -
----------------------------------------------------------
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Residues in contact with GLY 156 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154J CYS 2.9 0.6 - - - -
155J LYS* 1.3 79.7 - - - +
157J SER* 1.3 58.1 + - - +
218K CYS* 3.3 11.8 - - - -
280K SER* 3.3 30.2 + - - +
296K ASN* 2.8 29.5 + - - -
299K PHE* 4.1 7.2 - - - -
136L ARG 3.8 0.2 - - - +
137L PRO* 3.7 3.5 - - - +
138L CYS* 3.4 5.0 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il