Contacts of the helix formed by residues 83 - 134 (chain C) in PDB entry 1LWU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 83 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84C THR* 1.3 60.1 + - - +
85C VAL* 3.3 3.9 - - - +
86C GLN* 3.0 26.7 + - - +
87C LYS* 2.7 54.5 + - + +
101J TYR* 5.6 1.8 - - - -
163K ALA* 4.1 24.2 - - + +
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Residues in contact with THR 84 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164B GLN* 4.3 9.2 - - - +
168B GLU* 3.1 28.7 - - - +
83C LYS* 1.3 76.5 + - - +
85C VAL* 1.3 59.6 + - - +
86C GLN 2.9 1.6 - - - -
87C LYS* 2.6 12.0 + - + +
88C ILE* 2.6 53.2 + - + +
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Residues in contact with VAL 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A TYR* 4.5 17.0 - - + +
105A LEU* 4.6 12.8 - - + -
108A LEU* 5.1 1.0 - - - +
164B GLN* 3.2 30.1 - - + +
83C LYS* 5.4 1.1 - - - +
84C THR* 1.3 77.3 - - - +
86C GLN* 1.3 58.6 + - - +
88C ILE* 4.0 14.2 + - + +
89C LEU* 3.9 20.8 - - + +
101J TYR* 3.4 34.1 - - + +
84L THR* 5.2 2.9 - - + -
85L VAL* 3.9 24.7 - - + -
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Residues in contact with GLN 86 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C LYS* 3.0 30.5 + - - +
84C THR 2.9 0.8 - - - -
85C VAL* 1.3 80.9 - - - +
87C LYS* 1.3 74.3 + - - +
89C LEU* 3.4 16.6 - - + +
90C GLU* 3.6 20.6 + - - +
98J GLU* 4.7 17.1 + - - +
101J TYR* 3.6 31.4 + - + +
102J SER* 5.9 1.2 + - - -
105J LEU* 6.3 1.4 - - - +
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Residues in contact with LYS 87 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C LYS* 2.7 34.2 + - + +
84C THR* 2.6 18.7 + - + +
86C GLN* 1.3 82.7 + - - +
88C ILE* 1.3 51.7 + - + +
89C LEU 2.6 16.7 + - - -
90C GLU* 2.7 32.8 + - + +
91C GLU* 2.8 39.6 + - + +
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Residues in contact with ILE 88 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 3.9 8.8 - - + +
112A ILE* 4.7 0.2 - - + -
164B GLN* 4.2 11.4 - - + -
167B ILE* 3.3 33.4 - - + -
168B GLU* 3.3 31.2 - - + +
171B TYR* 4.5 21.8 - - + -
84C THR* 2.6 43.4 + - + +
85C VAL* 4.1 12.1 - - + +
86C GLN 3.6 0.2 - - - -
87C LYS* 1.3 70.9 - - - +
89C LEU* 1.3 57.7 + - - +
91C GLU* 4.2 8.7 - - - +
92C VAL* 2.9 22.9 - - - +
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Residues in contact with LEU 89 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A VAL* 5.5 3.1 - - + -
108A LEU* 3.3 44.4 - - + -
85C VAL* 3.9 11.4 - - + +
86C GLN 3.4 13.0 - - - +
87C LYS 2.6 5.7 + - - -
88C ILE* 1.3 74.3 - - - +
90C GLU* 1.3 59.1 + - + +
91C GLU 2.9 0.9 - - - -
92C VAL* 2.5 27.2 + - - +
93C ARG* 2.7 12.5 + - - +
97J LEU* 3.6 16.8 - - + +
98J GLU* 3.3 43.7 - - + +
101J TYR* 4.2 18.4 - - + -
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Residues in contact with GLU 90 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C GLN* 3.6 20.6 + - - +
87C LYS* 2.7 45.7 + - + +
89C LEU* 1.3 77.6 - - - +
91C GLU* 1.3 66.1 + - - +
93C ARG* 3.0 16.0 + - - +
94C ILE* 2.9 31.2 + - + +
98J GLU* 4.2 18.2 - - - +
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Residues in contact with GLU 91 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171B TYR* 2.7 42.8 + - + +
175B LYS* 3.9 13.7 - - - -
87C LYS* 2.8 36.9 + - + +
88C ILE* 4.2 4.9 - - - -
90C GLU* 1.3 78.3 - - + +
92C VAL* 1.3 57.0 + - - +
94C ILE* 3.1 13.8 + - - +
95C LEU* 2.8 31.3 + - - +
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Residues in contact with VAL 92 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A LEU* 4.3 6.7 - - + -
111A ARG* 3.9 29.8 - - + +
112A ILE* 3.4 41.1 - - + -
115A LEU* 4.3 8.3 - - + -
171B TYR* 4.2 9.9 - - + -
88C ILE 2.9 20.9 - - - +
89C LEU* 2.5 18.8 + - - +
91C GLU* 1.3 68.9 - - - +
93C ARG* 1.3 65.1 + - - +
94C ILE 3.0 1.8 - - - -
95C LEU* 3.9 6.0 - - - +
96C GLU* 2.9 35.9 + - + +
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Residues in contact with ARG 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A ARG* 5.7 5.4 - - - +
89C LEU 2.7 14.3 + - - +
90C GLU* 3.4 17.9 - - - +
92C VAL* 1.3 73.6 - - - +
94C ILE* 1.3 59.5 + - + +
96C GLU* 3.8 13.3 + - - +
97C GLN* 2.9 44.1 + - + +
95J ASN* 2.7 55.4 + - - +
98J GLU* 5.0 6.5 - - - +
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Residues in contact with ILE 94 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175B LYS* 6.5 0.9 - - - -
90C GLU* 2.9 21.0 + - + +
91C GLU* 3.2 15.0 - - - +
93C ARG* 1.3 76.2 - - + +
95C LEU* 1.3 69.4 + - + +
96C GLU 3.0 2.5 - - - -
97C GLN* 3.0 26.6 + - + +
98C ILE* 2.9 37.5 + - + +
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Residues in contact with LEU 95 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A LEU* 3.3 39.1 - - + +
171B TYR* 3.9 25.8 - - + -
174B VAL* 3.9 8.1 - - + -
175B LYS* 3.8 51.6 - - + +
178B ILE* 3.7 21.9 - - + +
179B GLU* 5.2 3.4 - - + -
91C GLU 2.8 21.5 + - - +
92C VAL* 3.4 3.8 + - + +
94C ILE* 1.3 75.1 - - + +
96C GLU* 1.3 60.3 + - - +
98C ILE* 4.0 7.8 - - + +
99C GLY 3.2 15.9 + - - -
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Residues in contact with GLU 96 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111A ARG* 2.8 55.3 + - - +
115A LEU* 4.2 16.2 - - + -
118A ARG* 4.3 4.9 + - - +
92C VAL* 2.9 25.9 + - + +
93C ARG* 3.8 11.7 - - - +
94C ILE 3.0 0.6 - - - -
95C LEU* 1.3 77.1 - - - +
97C GLN* 1.3 66.1 + - + +
98C ILE 3.2 0.2 + - - -
99C GLY* 3.3 1.4 + - - -
100C VAL* 3.1 30.8 + - + +
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Residues in contact with GLN 97 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93C ARG* 2.9 42.8 + - + +
94C ILE* 3.1 36.7 - - + +
96C GLU* 1.3 78.9 - - + +
98C ILE* 1.3 67.0 + - + +
100C VAL* 3.6 7.8 + - - +
101C SER* 3.3 20.1 + - - -
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Residues in contact with ILE 98 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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178B ILE* 3.7 14.6 - - + +
94C ILE* 2.9 35.4 + - + +
95C LEU* 4.0 7.4 - - + +
97C GLN* 1.3 76.4 - - + +
99C GLY* 1.3 58.4 + - - +
101C SER* 2.6 33.7 + - - +
102C HIS* 2.8 40.9 + - + +
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Residues in contact with GLY 99 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 4.2 12.1 - - - -
122A GLN* 2.9 22.1 - - - +
178B ILE* 4.8 8.4 - - - +
95C LEU 3.2 13.6 + - - -
96C GLU 3.8 2.7 - - - -
98C ILE* 1.3 78.5 - - - +
100C VAL* 1.3 57.1 + - - +
102C HIS* 2.9 8.1 + - - -
103C ASP* 2.8 29.5 + - - +
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Residues in contact with VAL 100 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ARG* 3.1 24.4 - - - +
96C GLU* 3.1 13.7 + - + +
97C GLN* 3.7 10.5 - - - +
98C ILE 3.1 0.6 - - - -
99C GLY* 1.3 74.1 - - - +
101C SER* 1.3 61.6 + - - +
103C ASP* 2.9 28.1 + - + +
104C ALA* 3.1 10.8 + - + +
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Residues in contact with SER 101 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97C GLN 3.3 10.7 + - - -
98C ILE* 2.6 19.3 + - - +
100C VAL* 1.3 77.1 - - - +
102C HIS* 1.3 50.6 + - - -
104C ALA* 2.8 10.5 + - - +
105C GLN* 2.7 51.8 + - - +
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Residues in contact with HIS 102 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A GLN* 3.1 27.0 + - - +
178B ILE* 3.0 32.9 + - + +
182B VAL* 3.0 27.1 - - + +
183B ALA* 3.5 20.2 - - + +
186B LEU* 4.3 6.5 - - + +
98C ILE* 2.8 34.7 + - + +
99C GLY* 2.9 3.9 + - - +
101C SER* 1.3 77.3 - - - +
103C ASP* 1.3 55.5 + - - +
105C GLN* 3.9 24.6 + - - +
106C ILE* 2.9 36.8 + - - +
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Residues in contact with ASP 103 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118A ARG* 3.2 33.6 + - - +
121A MET* 5.7 1.7 - - - +
122A GLN* 3.5 21.9 + - - +
125A GLN* 5.1 7.7 + - - +
99C GLY 2.8 18.6 + - - +
100C VAL* 2.9 14.5 + - + +
102C HIS* 1.3 77.1 - - - +
104C ALA* 1.3 56.7 + - - +
106C ILE* 4.0 6.3 - - - +
107C GLN* 3.2 32.4 + - - +
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Residues in contact with ALA 104 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100C VAL* 3.1 8.2 + - + +
101C SER* 2.8 13.3 + - - +
103C ASP* 1.3 76.4 - - - +
105C GLN* 1.3 61.3 + - + +
106C ILE 3.1 1.3 - - - -
107C GLN* 2.8 10.7 + - - +
108C GLU* 2.8 27.6 + - - +
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Residues in contact with GLN 105 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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186B LEU* 3.2 31.2 - - + +
187B ARG* 3.8 24.1 + - - +
101C SER* 2.7 29.3 + - - +
102C HIS* 3.9 24.8 + - - +
104C ALA* 1.3 74.5 - - + +
106C ILE* 1.3 62.6 + - - +
108C GLU* 3.2 17.4 + - - +
109C LEU* 3.1 28.6 + - + +
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Residues in contact with ILE 106 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122A GLN* 3.7 47.1 - - + +
125A GLN* 2.9 44.9 - - + +
126A LEU* 4.2 10.3 - - + -
129A LEU* 4.3 8.2 - - + +
186B LEU* 3.4 21.1 - - + -
102C HIS 2.9 24.6 + - - +
103C ASP* 4.0 4.0 - - - +
105C GLN* 1.3 76.7 - - - +
107C GLN* 1.3 70.8 + - - +
109C LEU* 3.3 8.8 + - - +
110C SER* 3.2 22.5 + - - +
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Residues in contact with GLN 107 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A GLN* 3.0 28.5 + - - -
103C ASP* 3.2 19.3 + - - +
104C ALA* 2.8 10.1 + - - +
106C ILE* 1.3 89.3 - - - +
108C GLU* 1.3 65.5 + - - +
109C LEU 2.9 2.0 + - - -
110C SER* 3.0 12.7 + - - +
111C GLU* 2.9 25.6 + - - +
114C ARG* 3.8 6.5 + - - +
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Residues in contact with GLU 108 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187B ARG* 5.1 1.0 + - - -
190B LYS* 3.7 31.2 + - - +
104C ALA 2.8 12.0 + - - +
105C GLN* 3.2 21.8 + - - +
107C GLN* 1.3 78.1 - - - +
109C LEU* 1.3 60.6 + - - +
111C GLU* 3.8 6.7 - - + +
112C MET* 3.1 42.9 + - + +
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Residues in contact with LEU 109 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A LEU* 3.5 32.3 - - + +
186B LEU* 3.7 23.3 - - + +
189B MET* 3.7 28.3 - - + -
190B LYS* 3.3 38.6 - - + -
193B LEU* 3.6 13.2 - - + +
105C GLN 3.1 18.1 + - - +
106C ILE* 3.5 3.4 - - - +
107C GLN 2.9 0.8 - - - -
108C GLU* 1.3 82.1 - - - +
110C SER* 1.3 55.2 + - - +
111C GLU 3.2 0.4 - - - -
112C MET* 3.2 8.3 + - + +
113C TRP* 2.7 34.4 + - - +
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Residues in contact with SER 110 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128A LEU* 5.7 3.6 - - - +
129A LEU* 3.9 15.4 - - - +
106C ILE* 3.2 12.9 + - - +
107C GLN* 3.0 14.0 + - - -
109C LEU* 1.3 75.4 - - - +
111C GLU* 1.3 66.3 + - - +
113C TRP* 3.6 7.7 - - - +
114C ARG* 2.7 47.4 + - - +
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Residues in contact with GLU 111 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107C GLN 2.9 13.4 + - - +
108C GLU* 3.8 8.7 - - + +
110C SER* 1.3 75.3 - - - +
112C MET* 1.3 60.2 + - - +
114C ARG* 2.8 32.6 + - - +
115C VAL* 2.9 56.6 + - + +
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Residues in contact with MET 112 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190B LYS* 3.9 34.8 - - + +
193B LEU* 4.1 28.0 - - + +
194B GLU* 4.6 11.0 - - - +
197B ARG* 6.0 6.1 - - + +
108C GLU* 3.1 53.4 + - + +
109C LEU* 3.3 10.3 - - + +
111C GLU* 1.3 82.4 - - - +
113C TRP* 1.3 59.7 + - - +
115C VAL* 3.8 6.6 + - + +
116C ASN* 3.2 31.9 + - - +
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Residues in contact with TRP 113 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A LEU* 4.6 7.6 - - + -
132A ASN* 3.4 61.6 + - + -
133A ILE* 4.4 4.5 - - + -
135A THR* 5.0 5.4 - - - -
136A GLN* 2.8 43.9 + - + +
193B LEU* 3.5 19.2 - - + +
109C LEU 2.7 19.5 + - - +
110C SER* 3.6 8.7 - - - +
111C GLU 3.1 0.2 - - - -
112C MET* 1.3 72.0 - - - +
114C ARG* 1.3 69.8 + - + +
116C ASN 3.2 1.0 + - - -
117C GLN* 2.7 63.2 + - + +
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Residues in contact with ARG 114 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107C GLN* 3.8 10.3 + - - +
110C SER* 2.7 36.4 + - - +
111C GLU* 2.8 49.4 + - - +
113C TRP* 1.3 87.9 - - + +
115C VAL* 1.3 66.2 + - - +
117C GLN* 3.3 6.5 + - - +
118C GLN* 3.1 35.4 + - - +
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Residues in contact with VAL 115 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197B ARG* 5.3 10.1 - - + -
111C GLU* 2.9 40.3 + - + +
112C MET* 3.8 6.7 - - - +
114C ARG* 1.3 75.1 - - - +
116C ASN* 1.3 73.4 + - - +
118C GLN* 2.9 22.4 + - - +
119C PHE* 2.9 22.8 + - + +
122C ARG* 5.5 0.3 + - - -
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Residues in contact with ASN 116 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136A GLN* 3.5 18.6 + - - +
193B LEU* 3.1 26.8 + - - +
196B LEU* 3.5 12.3 - - - +
197B ARG* 3.2 36.5 - - - +
200B MET* 3.6 16.1 - - + +
112C MET* 3.2 16.2 + - - +
113C TRP* 3.2 8.2 + - - +
115C VAL* 1.3 78.9 - - - +
117C GLN* 1.3 57.1 + - - +
118C GLN 2.9 4.3 - - - -
119C PHE* 2.6 24.3 + - - +
120C VAL* 2.8 15.4 + - - +
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Residues in contact with GLN 117 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135A THR 4.6 1.2 - - - +
136A GLN* 2.9 34.1 + - - +
139A GLN* 3.0 40.6 + - - +
113C TRP* 2.7 50.0 + - + +
114C ARG* 3.6 9.6 - - - +
116C ASN* 1.3 72.7 - - - +
118C GLN* 1.3 60.4 + - + +
120C VAL* 3.8 7.6 + - - +
121C THR* 3.3 20.8 + - - -
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Residues in contact with GLN 118 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114C ARG* 3.1 21.3 + - - +
115C VAL* 2.9 26.2 + - - +
116C ASN 2.9 0.4 - - - -
117C GLN* 1.3 76.8 - - + +
119C PHE* 1.3 59.2 + - - +
120C VAL 3.2 0.2 - - - -
121C THR* 3.0 10.0 + - - -
122C ARG* 2.9 34.8 + - - +
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Residues in contact with PHE 119 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197B ARG* 4.2 17.7 - - + -
200B MET* 3.2 58.6 - - + -
201B GLN* 3.6 24.0 - - + -
204B GLU* 3.1 35.7 - - + -
115C VAL* 2.9 15.5 + - + +
116C ASN* 2.6 17.8 + - - +
118C GLN* 1.3 71.1 - - - +
120C VAL* 1.3 55.6 + - - +
122C ARG* 3.2 28.4 + - - +
123C LEU* 2.9 33.6 + - + +
----------------------------------------------------------
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Residues in contact with VAL 120 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A GLN* 4.6 3.1 - - + -
139A GLN* 2.9 42.0 - - + +
140A ILE* 3.5 30.3 - - + -
143A VAL* 4.0 17.7 - - + +
200B MET* 3.6 10.1 - - + -
116C ASN 2.8 17.0 + - - +
117C GLN* 3.8 14.6 - - - +
118C GLN 3.2 0.2 - - - -
119C PHE* 1.3 75.7 - - - +
121C THR* 1.3 54.0 + - - +
123C LEU* 3.3 5.2 + - - +
124C GLN* 2.7 33.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 121 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A GLN* 5.7 2.3 + - - +
117C GLN 3.3 12.8 + - - -
118C GLN* 3.0 12.0 + - - -
120C VAL* 1.3 75.3 - - - +
122C ARG* 1.3 60.4 + - - +
124C GLN* 2.6 32.9 + - + +
125C GLN* 2.9 15.3 + - + +
----------------------------------------------------------
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Residues in contact with ARG 122 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204B GLU* 2.7 25.0 + - - -
118C GLN* 2.9 13.6 + - - +
119C PHE* 3.2 57.3 - - + +
121C THR* 1.3 76.7 - - - +
123C LEU* 1.3 58.0 + - - +
125C GLN* 3.0 41.0 + - - +
126C GLN* 3.0 30.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 123 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140A ILE* 6.1 0.4 - - + -
143A VAL* 4.4 14.1 - - + -
147A ILE* 4.3 10.1 - - + +
200B MET* 3.8 37.2 - - + +
203B MET* 3.9 24.9 - - + +
204B GLU* 3.6 35.7 - - + +
207B ILE* 4.9 1.6 - - + -
119C PHE* 2.9 22.7 + - + +
120C VAL* 3.8 4.5 - - - +
122C ARG* 1.3 74.0 - - - +
124C GLN* 1.3 67.7 + - - +
126C GLN* 3.7 17.5 - - + +
127C LEU* 2.9 25.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A GLN* 4.9 7.6 - - - +
142A ARG* 6.3 0.2 - - - +
143A VAL* 3.0 39.1 - - - +
146A ASP* 5.4 3.5 + - - +
120C VAL* 2.7 23.9 + - + +
121C THR* 2.6 25.0 + - + +
123C LEU* 1.3 73.8 - - - +
125C GLN* 1.3 58.5 + - - +
127C LEU* 3.1 26.8 + - - +
128C VAL* 3.3 17.0 + - - +
131C ARG* 5.8 0.3 + - - -
----------------------------------------------------------
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Residues in contact with GLN 125 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121C THR* 2.9 10.7 + - + +
122C ARG* 3.0 34.7 + - - +
124C GLN* 1.3 77.9 - - - +
126C GLN* 1.3 78.5 + - - +
128C VAL* 3.1 15.1 - - + +
129C ASP* 2.9 38.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 126 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147A ILE* 6.4 0.2 - - + -
204B GLU* 3.1 29.2 + - - +
207B ILE* 3.7 22.0 - - + +
208B LYS* 3.3 33.5 - - - +
122C ARG* 3.0 38.2 + - - +
123C LEU* 3.2 15.3 + - + +
125C GLN* 1.3 101.1 - - - +
127C LEU* 1.3 58.5 + - - +
129C ASP* 3.5 7.8 - - - +
130C ILE* 2.8 32.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 127 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A VAL* 4.7 5.2 - - + +
146A ASP* 3.3 56.1 - - + +
147A ILE* 3.8 18.4 - - + +
150A ALA* 3.6 17.7 - - + -
207B ILE* 5.8 0.9 - - - +
123C LEU 2.9 12.7 + - - +
124C GLN* 3.1 21.7 + - - +
126C GLN* 1.3 73.4 - - - +
128C VAL* 1.3 66.1 + - + +
130C ILE* 3.0 8.4 - - + +
131C ARG* 2.9 49.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 128 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C GLN* 3.5 17.5 - - - +
125C GLN* 3.1 16.4 + - - +
127C LEU* 1.3 75.7 - - + +
129C ASP* 1.3 76.6 + - - +
131C ARG* 3.3 25.1 + - - +
132C GLN* 3.2 28.0 + - + +
----------------------------------------------------------
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Residues in contact with ASP 129 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211B LYS* 4.6 16.4 + - - +
125C GLN* 2.9 28.6 + - - +
126C GLN* 3.5 9.4 - - - +
128C VAL* 1.3 92.6 - - - +
130C ILE* 1.3 60.1 + - - +
132C GLN* 3.4 5.3 + - - +
133C THR* 2.8 30.7 + - + +
----------------------------------------------------------
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Residues in contact with ILE 130 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A ALA* 4.0 17.9 - - + -
151A LEU* 3.7 27.8 - - + +
154A CYS* 4.0 10.3 - - - -
207B ILE* 4.6 12.6 - - + +
210B GLN* 4.5 0.4 - - + -
211B LYS* 4.4 29.4 - - + +
126C GLN 2.8 20.1 + - - +
127C LEU* 3.0 21.3 - - + +
129C ASP* 1.3 70.4 - - - +
131C ARG* 1.3 71.9 + - - +
132C GLN 3.0 0.3 + - - -
133C THR* 3.1 22.1 + - + +
134C CYS* 2.8 36.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 131 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146A ASP* 3.6 24.7 + - - +
150A ALA* 4.0 17.9 - - + +
153A ALA* 6.0 2.3 - - - +
282B ASN* 4.7 9.9 + - - +
435B ARG* 4.1 6.9 - - - +
448B ASP* 3.8 13.9 + - - -
124C GLN* 5.8 0.6 + - - -
127C LEU* 2.9 54.8 + - - +
128C VAL* 3.4 22.6 - - - +
130C ILE* 1.3 77.0 - - - +
132C GLN* 1.3 68.6 + - - +
134C CYS* 3.6 3.6 + - - -
135C SER* 2.8 26.0 + - - -
----------------------------------------------------------
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Residues in contact with GLN 132 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282B ASN* 5.5 1.4 + - - -
128C VAL* 3.2 10.5 + - + +
129C ASP* 3.7 8.3 - - - +
130C ILE 3.1 1.0 - - - -
131C ARG* 1.3 86.8 - - - +
133C THR* 1.3 69.4 + - + +
135C SER* 2.9 27.8 + - - -
136C ARG* 4.5 5.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 133 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A SER* 3.3 10.7 + - - -
158A CYS* 5.0 2.0 - - - -
211B LYS* 4.8 18.2 - - + +
214B CYS* 4.3 13.4 - - - +
129C ASP* 2.8 23.3 - - + +
130C ILE* 3.1 15.4 + - + +
132C GLN* 1.3 76.3 - - + +
134C CYS* 1.3 72.5 + - - +
135C SER 3.4 1.7 + - - -
136C ARG* 4.2 10.7 + - - +
----------------------------------------------------------
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Residues in contact with CYS 134 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A ALA 4.7 1.3 - - - +
153A ALA* 3.9 20.9 - - + +
154A CYS* 2.0 59.0 - - - +
157A SER* 3.2 18.1 - - - -
158A CYS* 3.7 0.9 - - - -
214B CYS* 3.6 14.4 - - - -
280B SER 5.3 0.3 - - - +
281B SER* 5.7 0.3 - - - -
282B ASN* 5.1 3.9 + - - +
130C ILE* 2.8 19.3 + - - +
131C ARG* 3.8 4.7 - - - +
133C THR* 1.3 87.1 + - - +
135C SER* 1.3 59.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il