Contacts of the helix formed by residues 83 - 134 (chain F) in PDB entry 1LWU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 83 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84F THR* 1.3 59.5 + - - +
85F VAL* 3.3 3.1 - - - +
86F GLN* 3.0 26.9 + - - +
87F LYS* 2.7 55.9 + - + +
101G TYR* 5.4 2.9 - - - -
163H ALA* 4.4 20.8 - - - +
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Residues in contact with THR 84 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164E GLN* 4.3 9.4 - - - +
168E GLU* 3.1 29.2 - - - +
83F LYS* 1.3 75.9 + - - +
85F VAL* 1.3 59.3 + - - +
86F GLN 2.9 1.6 - - - -
87F LYS* 2.6 12.5 + - + +
88F ILE* 2.6 53.7 + - + +
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Residues in contact with VAL 85 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101D TYR* 4.5 16.8 - - + +
105D LEU* 4.6 13.5 - - + -
108D LEU* 5.1 0.9 - - - +
164E GLN* 3.2 30.1 - - + +
83F LYS* 5.5 0.9 - - - +
84F THR* 1.3 76.7 - - - +
86F GLN* 1.3 59.1 + - - +
88F ILE* 3.9 15.5 + - + +
89F LEU* 3.9 20.4 + - + +
101G TYR* 3.2 34.2 - - + +
84I THR* 5.2 1.3 - - + -
85I VAL* 3.7 25.6 - - + -
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Residues in contact with GLN 86 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F LYS* 3.0 30.7 + - - +
84F THR 2.9 0.4 - - - -
85F VAL* 1.3 81.2 - - - +
87F LYS* 1.3 75.3 + - - +
89F LEU* 3.5 17.5 - - + +
90F GLU* 3.6 19.9 + - - +
98G GLU* 4.3 22.0 + - - +
101G TYR* 3.5 30.0 + - + +
102G SER* 5.5 4.4 + - - -
105G LEU* 6.4 0.2 - - - +
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Residues in contact with LYS 87 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F LYS* 2.7 35.2 + - + +
84F THR* 2.6 18.7 + - + +
86F GLN* 1.3 81.9 + - - +
88F ILE* 1.3 52.3 + - + +
89F LEU 2.6 15.7 + - - -
90F GLU* 2.7 32.6 + - + +
91F GLU* 2.8 39.3 + - + +
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Residues in contact with ILE 88 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108D LEU* 3.9 9.2 - - + +
112D ILE* 4.8 0.4 - - + -
164E GLN* 4.2 11.4 - - + -
167E ILE* 3.3 33.2 - - + -
168E GLU* 3.4 31.2 - - + +
171E TYR* 4.5 20.9 - - + -
84F THR* 2.6 43.2 + - + +
85F VAL* 4.1 12.3 - - + +
86F GLN 3.6 0.2 - - - -
87F LYS* 1.3 70.8 - - - +
89F LEU* 1.3 57.4 + - - +
91F GLU* 4.2 8.7 - - - +
92F VAL* 2.9 23.1 - - - +
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Residues in contact with LEU 89 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104D VAL* 5.5 3.4 - - + -
108D LEU* 3.2 44.4 - - + -
111D ARG* 6.4 0.7 - - - +
85F VAL* 3.9 11.9 - - + +
86F GLN* 3.5 12.7 - - + +
87F LYS 2.6 1.4 + - - -
88F ILE* 1.3 76.7 - - - +
90F GLU* 1.3 58.8 + - + +
91F GLU 2.9 0.9 - - - -
92F VAL* 2.5 27.0 + - - +
93F ARG* 2.7 13.1 + - - +
97G LEU* 3.7 20.9 - - + +
98G GLU* 3.5 37.7 - - + +
101G TYR* 4.5 14.1 - - + -
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Residues in contact with GLU 90 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86F GLN* 3.6 18.9 + - - +
87F LYS* 2.7 46.7 + - + +
89F LEU* 1.3 77.1 - - - +
91F GLU* 1.3 67.0 + - - +
93F ARG* 3.0 14.9 + - - +
94F ILE* 2.9 31.3 + - + +
98G GLU* 4.0 19.5 - - + +
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Residues in contact with GLU 91 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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171E TYR* 2.7 45.2 + - + +
175E LYS* 3.9 14.4 - - - +
87F LYS* 2.8 37.2 + - + +
88F ILE* 4.2 4.5 - - - -
90F GLU* 1.3 77.7 - - + +
92F VAL* 1.3 56.8 + - - +
94F ILE* 3.1 14.2 + - - +
95F LEU* 2.8 29.1 + - - +
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Residues in contact with VAL 92 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108D LEU* 4.3 6.1 - - + -
111D ARG* 3.9 29.6 - - + +
112D ILE* 3.4 41.3 - - + -
115D LEU* 4.3 8.3 - - + -
171E TYR* 4.2 10.3 - - + -
88F ILE 2.9 20.6 - - - +
89F LEU* 2.5 15.4 + - - +
91F GLU* 1.3 68.7 - - - +
93F ARG* 1.3 63.0 + - - +
94F ILE 3.0 1.6 - - - -
95F LEU* 4.2 6.1 - - - +
96F GLU* 2.9 36.2 + - + +
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Residues in contact with ARG 93 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111D ARG* 5.7 5.6 - - - +
89F LEU 2.7 14.6 + - - +
90F GLU* 3.4 17.9 - - - +
92F VAL* 1.3 73.2 - - - +
94F ILE* 1.3 59.7 + - + +
96F GLU* 3.7 12.8 + - - +
97F GLN* 2.9 44.7 + - + +
95G ASN* 2.5 54.5 + - - +
98G GLU* 5.4 2.6 - - - +
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Residues in contact with ILE 94 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175E LYS* 6.5 0.9 - - - -
90F GLU* 2.9 21.6 + - + +
91F GLU* 3.2 14.8 - - - +
93F ARG* 1.3 76.2 - - + +
95F LEU* 1.3 69.1 + - + +
96F GLU 3.0 1.8 - - - -
97F GLN* 2.9 27.0 + - + +
98F ILE* 2.9 37.5 + - + +
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Residues in contact with LEU 95 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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112D ILE* 6.6 0.2 - - + -
115D LEU* 3.3 37.1 - - + +
171E TYR* 3.9 26.7 - - + -
174E VAL* 3.9 8.1 - - + -
175E LYS* 3.8 51.1 - - + +
178E ILE* 3.7 22.7 - - + +
179E GLU* 5.2 3.4 - - + -
91F GLU 2.8 20.6 + - - +
92F VAL* 3.4 3.6 + - + +
94F ILE* 1.3 76.7 - - + +
96F GLU* 1.3 60.4 + - - +
98F ILE* 3.9 7.6 - - + -
99F GLY 3.2 16.5 + - - -
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Residues in contact with GLU 96 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111D ARG* 2.8 54.4 + - - +
114D HIS* 6.2 0.2 - - - -
115D LEU* 4.2 16.4 - - + -
118D ARG* 4.3 4.7 + - - +
92F VAL* 2.9 25.9 + - + +
93F ARG* 3.8 11.1 - - - +
94F ILE 3.0 0.6 - - - -
95F LEU* 1.3 77.3 - - - +
97F GLN* 1.3 65.8 + - + +
99F GLY* 3.3 1.7 + - - -
100F VAL* 3.1 31.0 + - + +
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Residues in contact with GLN 97 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93F ARG* 2.9 42.8 + - + +
94F ILE* 2.9 36.6 + - + +
96F GLU* 1.3 78.2 - - + +
98F ILE* 1.3 67.0 + - + +
100F VAL* 3.6 8.2 + - - +
101F SER* 3.3 20.5 + - - -
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Residues in contact with ILE 98 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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178E ILE* 3.7 14.8 - - + -
179E GLU* 6.5 0.2 - - + -
94F ILE* 2.9 33.7 + - + +
95F LEU* 4.0 7.9 - - + +
97F GLN* 1.3 77.0 - - + +
99F GLY* 1.3 58.9 + - - +
101F SER* 2.6 34.7 + - - +
102F HIS* 2.8 41.0 + - + +
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Residues in contact with GLY 99 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118D ARG* 4.2 11.7 - - - -
122D GLN* 2.9 22.7 - - - +
178E ILE* 4.8 8.2 - - - +
95F LEU 3.2 13.6 + - - -
96F GLU 3.3 3.1 + - - -
98F ILE* 1.3 79.3 - - - +
100F VAL* 1.3 56.3 + - - +
102F HIS* 2.9 7.9 + - - -
103F ASP* 2.8 30.1 + - - +
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Residues in contact with VAL 100 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118D ARG* 3.1 24.6 - - - +
96F GLU* 3.1 13.9 + - + +
97F GLN* 3.7 10.5 - - - +
98F ILE 3.1 0.6 - - - -
99F GLY* 1.3 73.9 - - - +
101F SER* 1.3 59.7 + - - +
103F ASP* 2.9 29.0 + - + +
104F ALA* 3.1 10.4 + - + +
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Residues in contact with SER 101 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97F GLN 3.3 10.6 + - - -
98F ILE* 2.6 19.5 + - - +
100F VAL* 1.3 76.8 - - - +
102F HIS* 1.3 51.0 + - - -
104F ALA* 2.8 11.3 + - - +
105F GLN* 2.7 51.0 + - - +
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Residues in contact with HIS 102 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122D GLN* 3.1 19.8 + - - +
178E ILE* 3.0 33.7 + - + +
182E VAL* 3.0 27.1 - - + +
183E ALA* 3.5 19.0 - - + +
186E LEU* 4.3 5.6 - - + +
98F ILE* 2.8 35.3 + - + +
99F GLY* 2.9 11.5 + - - +
101F SER* 1.3 77.7 - - - +
103F ASP* 1.3 55.0 + - - +
105F GLN* 3.8 25.1 + - - +
106F ILE* 2.9 35.9 + - - +
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Residues in contact with ASP 103 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118D ARG* 3.2 33.1 + - - +
121D MET* 5.7 1.7 - - - +
122D GLN* 3.4 22.0 - - - +
125D GLN* 5.1 7.4 + - - +
99F GLY 2.8 18.7 + - - +
100F VAL* 2.9 14.2 + - + +
102F HIS* 1.3 78.6 - - - +
104F ALA* 1.3 55.8 + - - +
106F ILE* 4.0 6.1 - - - +
107F GLN* 3.2 32.0 + - - +
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Residues in contact with ALA 104 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100F VAL* 3.1 9.0 + - + +
101F SER* 2.8 12.9 + - - +
103F ASP* 1.3 75.4 - - - +
105F GLN* 1.3 55.0 - - + +
106F ILE 3.1 1.3 - - - -
107F GLN* 2.9 10.5 + - - +
108F GLU* 2.8 33.9 + - - +
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Residues in contact with GLN 105 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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186E LEU* 3.2 31.3 - - + +
187E ARG* 3.8 23.5 + - - +
101F SER* 2.7 29.0 + - - +
102F HIS* 3.9 23.8 + - - +
104F ALA* 1.3 74.1 - - + +
106F ILE* 1.3 61.2 + - - +
108F GLU* 3.2 17.3 + - - +
109F LEU* 3.1 29.0 + - + +
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Residues in contact with ILE 106 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122D GLN* 3.7 46.7 - - + +
125D GLN* 2.9 45.5 - - + +
126D LEU* 4.2 10.5 - - + -
129D LEU* 4.3 6.6 - - + +
186E LEU* 3.4 21.8 - - + -
102F HIS 2.9 25.0 + - - +
103F ASP* 4.1 4.5 - - - +
105F GLN* 1.3 76.1 - - - +
107F GLN* 1.3 71.2 + - - +
109F LEU* 3.3 9.2 + - - +
110F SER* 3.2 23.9 + - - +
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Residues in contact with GLN 107 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125D GLN* 3.0 28.3 + - - -
103F ASP* 3.2 18.9 + - - +
104F ALA* 2.9 10.3 + - - +
106F ILE* 1.3 87.6 - - - +
108F GLU* 1.3 67.6 + - - +
109F LEU 3.0 1.8 - - - -
110F SER* 3.1 12.9 + - - +
111F GLU* 2.9 26.3 + - - +
114F ARG* 3.8 6.4 + - - +
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Residues in contact with GLU 108 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187E ARG* 5.1 1.0 + - - -
190E LYS* 3.7 31.6 + - - +
104F ALA 2.8 12.0 + - - +
105F GLN* 3.2 20.5 + - - +
107F GLN* 1.3 77.7 - - - +
109F LEU* 1.3 59.6 + - - +
111F GLU* 3.8 6.3 - - + +
112F MET* 3.1 42.0 + - + +
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Residues in contact with LEU 109 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129D LEU* 3.5 32.1 - - + -
186E LEU* 3.7 33.4 - - + +
189E MET* 3.7 18.8 - - + -
190E LYS* 3.4 37.5 - - + -
193E LEU* 3.6 12.5 - - + +
105F GLN 3.1 17.5 + - - +
106F ILE* 3.5 3.4 - - - +
107F GLN 3.0 0.8 - - - -
108F GLU* 1.3 83.3 - - - +
110F SER* 1.3 55.2 + - - +
111F GLU 3.2 0.4 - - - -
112F MET* 3.2 9.3 + - + +
113F TRP* 2.7 35.0 + - - +
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Residues in contact with SER 110 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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128D LEU* 5.7 3.6 - - - +
129D LEU* 3.9 15.5 - - - +
106F ILE* 3.2 13.1 + - - +
107F GLN* 3.1 14.5 + - - -
109F LEU* 1.3 76.0 - - - +
111F GLU* 1.3 63.0 + - - +
113F TRP* 3.2 7.3 + - - +
114F ARG* 2.7 51.5 + - - +
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Residues in contact with GLU 111 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107F GLN 2.9 13.5 + - - +
108F GLU* 3.8 8.5 - - + +
110F SER* 1.3 75.2 - - - +
112F MET* 1.3 64.5 + - - +
114F ARG* 2.8 33.1 + - - +
115F VAL* 2.9 49.0 + - + +
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Residues in contact with MET 112 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190E LYS* 4.0 34.3 - - + +
193E LEU* 4.1 27.4 - - + +
194E GLU* 4.6 10.5 - - - +
197E ARG* 6.0 5.4 - - + +
108F GLU* 3.1 45.4 + - + +
109F LEU* 3.3 10.8 - - + +
111F GLU* 1.3 82.3 - - - +
113F TRP* 1.3 60.5 + - - +
115F VAL* 3.7 6.5 + - + +
116F ASN* 3.2 32.3 + - - +
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Residues in contact with TRP 113 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129D LEU* 4.6 7.6 - - + -
132D ASN* 3.4 62.3 + - + -
133D ILE* 4.4 4.0 - - + -
135D THR* 5.0 4.9 - - - -
136D GLN* 2.9 42.8 + - + +
193E LEU* 3.5 19.9 - - + +
109F LEU 2.7 18.8 + - - +
110F SER* 3.6 9.2 - - - +
111F GLU 3.1 0.4 - - - -
112F MET* 1.3 72.6 - - - +
114F ARG* 1.3 70.2 + - + +
116F ASN 3.2 1.0 + - - -
117F GLN* 2.8 63.6 + - + +
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Residues in contact with ARG 114 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107F GLN* 3.8 10.5 + - - +
110F SER* 2.7 35.1 + - - +
111F GLU* 2.8 48.6 + - - +
113F TRP* 1.3 87.9 - - + +
115F VAL* 1.3 66.1 + - - +
117F GLN* 3.3 6.3 + - - +
118F GLN* 3.1 35.2 + - - +
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Residues in contact with VAL 115 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197E ARG* 5.4 9.2 - - + -
111F GLU* 2.9 39.8 + - + +
112F MET* 3.8 7.6 - - + +
114F ARG* 1.3 74.9 - - - +
116F ASN* 1.3 74.2 + - - +
118F GLN* 2.9 22.5 + - - +
119F PHE* 2.9 24.5 + - + +
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Residues in contact with ASN 116 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136D GLN* 3.5 18.9 + - - +
193E LEU* 3.0 27.2 + - - +
196E LEU* 3.5 19.6 - - - +
197E ARG* 3.3 27.3 - - - +
200E MET* 3.6 15.4 - - + +
112F MET* 3.2 17.2 + - - +
113F TRP* 3.4 7.9 - - - +
115F VAL* 1.3 83.7 - - - +
117F GLN* 1.3 56.7 + - - +
119F PHE* 2.7 25.0 + - - +
120F VAL* 2.8 15.1 + - - +
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Residues in contact with GLN 117 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135D THR 4.5 1.1 - - - +
136D GLN* 2.9 36.6 + - - +
139D GLN* 3.0 40.0 + - - +
113F TRP* 2.8 48.4 + - + +
114F ARG* 3.7 9.4 - - - +
116F ASN* 1.3 71.9 - - - +
118F GLN* 1.3 60.7 + - + +
120F VAL* 3.8 9.0 + - - +
121F THR* 3.3 20.8 + - - -
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Residues in contact with GLN 118 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114F ARG* 3.1 22.5 + - - +
115F VAL* 2.9 25.0 + - - +
116F ASN 2.9 0.8 - - - -
117F GLN* 1.3 75.9 - - + +
119F PHE* 1.3 59.8 + - - +
120F VAL 3.2 0.2 - - - -
121F THR* 2.9 10.4 + - - +
122F ARG* 2.8 35.1 + - - +
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Residues in contact with PHE 119 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197E ARG* 4.2 16.4 - - + -
200E MET* 3.2 42.0 - - + -
201E GLN* 3.6 38.6 - - + -
204E GLU* 3.0 37.5 - - + -
115F VAL* 2.9 15.5 + - + +
116F ASN* 2.7 18.7 + - - +
118F GLN* 1.3 72.6 - - - +
120F VAL* 1.3 54.5 + - - +
122F ARG* 3.1 27.3 + - - +
123F LEU* 2.8 34.6 + - + +
----------------------------------------------------------
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Residues in contact with VAL 120 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136D GLN* 4.7 3.4 - - + -
139D GLN* 3.0 40.6 - - + +
140D ILE* 3.5 31.2 - - + -
143D VAL* 4.0 17.9 - - + +
200E MET* 3.6 8.7 - - + -
116F ASN 2.8 17.0 + - - +
117F GLN* 3.8 15.5 - - - +
119F PHE* 1.3 75.6 - - - +
121F THR* 1.3 53.5 + - - +
123F LEU* 3.4 5.8 + - - +
124F GLN* 2.7 33.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 121 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139D GLN* 5.7 1.8 + - - +
117F GLN 3.3 12.6 + - - -
118F GLN* 2.9 12.6 + - - -
120F VAL* 1.3 75.8 - - - +
122F ARG* 1.3 60.1 + - - +
124F GLN* 2.7 31.6 + - + +
125F GLN* 2.9 14.5 + - + +
----------------------------------------------------------
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Residues in contact with ARG 122 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204E GLU* 2.8 25.0 + - - -
118F GLN* 2.8 13.4 + - - +
119F PHE* 3.1 58.1 - - - +
121F THR* 1.3 76.7 - - - +
123F LEU* 1.3 57.0 + - - +
125F GLN* 3.0 42.0 + - - +
126F GLN* 3.1 30.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 123 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140D ILE* 6.1 0.7 - - + -
143D VAL* 4.3 14.4 - - + -
147D ILE* 4.4 9.3 - - + +
200E MET* 3.8 39.0 - - + +
203E MET* 3.9 24.9 - - + -
204E GLU* 3.7 34.8 - - + +
207E ILE* 5.0 1.8 - - + -
119F PHE* 2.8 22.3 + - + +
120F VAL* 3.8 4.5 - - - +
122F ARG* 1.3 74.2 - - - +
124F GLN* 1.3 66.9 + - - +
126F GLN* 3.7 18.9 - - + +
127F LEU* 2.9 25.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 124 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139D GLN* 4.9 8.5 - - - +
143D VAL* 3.0 39.3 - - - +
146D ASP* 5.4 4.3 + - - +
120F VAL* 2.7 23.2 + - + +
121F THR* 2.7 24.5 + - + +
123F LEU* 1.3 74.3 - - - +
125F GLN* 1.3 57.3 + - - +
127F LEU* 3.2 21.7 + - - +
128F VAL* 3.3 21.7 + - - +
131F ARG* 5.8 0.5 + - - -
----------------------------------------------------------
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Residues in contact with GLN 125 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121F THR* 2.9 11.1 + - + +
122F ARG* 3.0 23.7 + - - +
124F GLN* 1.3 74.2 - - - +
126F GLN* 1.3 91.8 + - - +
128F VAL* 3.1 15.1 - - + +
129F ASP* 2.9 39.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 126 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147D ILE* 6.4 0.2 - - + -
204E GLU* 3.1 30.0 + - - +
207E ILE* 3.8 22.6 - - + +
208E LYS* 3.2 34.3 - - - +
122F ARG* 3.1 38.8 + - - +
123F LEU* 3.2 14.3 + - + +
125F GLN* 1.3 102.2 - - - +
127F LEU* 1.3 57.6 + - - +
129F ASP* 3.4 7.3 - - - +
130F ILE* 2.8 32.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 127 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143D VAL* 4.8 4.5 - - + +
146D ASP* 3.3 55.2 - - + +
147D ILE* 3.8 19.7 - - + +
150D ALA* 3.7 17.5 - - + -
207E ILE* 5.8 0.7 - - - -
123F LEU 2.9 12.1 + - - +
124F GLN* 3.3 21.3 - - - +
125F GLN 3.1 0.2 - - - -
126F GLN* 1.3 73.8 - - - +
128F VAL* 1.3 66.8 + - + +
130F ILE* 3.0 8.6 - - + +
131F ARG* 2.9 48.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 128 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124F GLN* 3.4 17.9 - - - +
125F GLN* 3.1 16.2 - - - +
127F LEU* 1.3 75.3 - - + +
129F ASP* 1.3 76.4 + - - +
131F ARG* 3.3 25.7 + - - +
132F GLN* 3.2 27.4 + - + +
----------------------------------------------------------
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Residues in contact with ASP 129 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211E LYS* 4.6 16.1 + - - +
125F GLN* 2.9 29.4 + - - +
126F GLN* 3.4 9.6 - - - +
128F VAL* 1.3 91.9 - - - +
130F ILE* 1.3 60.0 + - - +
132F GLN* 3.4 5.8 + - - +
133F THR* 2.8 30.5 + - + +
----------------------------------------------------------
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Residues in contact with ILE 130 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150D ALA* 4.0 18.4 - - + -
151D LEU* 3.7 28.0 - - + +
154D CYS* 3.9 11.2 - - - -
207E ILE* 4.7 11.7 - - + +
210E GLN* 4.5 0.9 - - + -
211E LYS* 4.4 29.4 - - + +
126F GLN 2.8 20.1 + - - +
127F LEU* 3.0 21.1 - - + +
129F ASP* 1.3 71.1 - - - +
131F ARG* 1.3 70.9 + - - +
132F GLN 3.0 0.3 + - - -
133F THR* 3.1 20.4 + - + +
134F CYS* 2.8 36.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 131 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146D ASP* 3.6 23.8 + - - +
150D ALA* 4.0 17.4 - - + +
153D ALA* 6.0 2.3 - - - +
282E ASN* 4.7 9.0 + - - +
435E ARG* 4.0 7.7 - - - +
448E ASP* 3.7 15.3 + - - -
124F GLN* 5.8 0.6 + - - -
127F LEU* 2.9 55.5 + - - +
128F VAL* 3.4 22.1 - - - +
130F ILE* 1.3 77.9 - - - +
132F GLN* 1.3 62.3 + - - +
134F CYS* 3.7 3.7 + - - -
135F SER* 2.7 31.4 + - - -
----------------------------------------------------------
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Residues in contact with GLN 132 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282E ASN* 5.5 1.4 + - - -
128F VAL* 3.2 11.4 + - + +
129F ASP* 3.7 8.3 - - - +
130F ILE 3.1 0.8 - - - -
131F ARG* 1.3 85.5 - - - +
133F THR* 1.3 69.3 + - + +
134F CYS 3.1 1.6 - - - -
135F SER* 3.0 26.7 + - - -
136F ARG* 4.5 5.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 133 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157D SER* 3.3 10.0 + - - -
158D CYS* 5.1 2.0 - - - -
211E LYS* 4.8 18.2 - - + +
214E CYS* 4.3 12.6 - - - +
129F ASP* 2.8 23.1 - - + +
130F ILE* 3.1 15.1 + - + +
132F GLN* 1.3 76.9 - - + +
134F CYS* 1.3 72.7 + - - +
135F SER 3.3 1.6 + - - -
136F ARG* 4.2 10.9 + - - +
----------------------------------------------------------
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Residues in contact with CYS 134 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150D ALA 4.8 0.4 - - - +
153D ALA* 3.9 20.4 - - + +
154D CYS* 2.0 60.3 - - - +
157D SER* 3.2 17.6 - - - -
158D CYS* 3.7 0.9 - - - -
214E CYS* 3.6 12.1 - - - -
280E SER 5.4 0.5 - - - +
281E SER* 5.8 0.3 - - - -
282E ASN* 5.0 2.8 + - - +
130F ILE* 2.8 22.2 + - + +
131F ARG* 3.8 5.2 - - - +
133F THR* 1.3 87.6 + - - +
135F SER* 1.3 58.2 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il