Contacts of the helix formed by residues 58 - 85 (chain I) in PDB entry 1MWA


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLU 58 (chain I).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27C  SER*     3.5    25.7    +      -       -      +
     56I  GLY*     3.9    17.1    -      -       -      -
     57I  PRO*     1.3    80.2    -      -       +      +
     59I  TYR*     1.3    55.6    +      -       -      +
     61I  GLU*     3.3     5.8    -      -       -      +
     62I  ARG*     2.4    38.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 59 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27C  SER*     4.7     5.5    -      -       -      +
     34I  VAL*     4.0     9.4    -      -       -      +
     45I  TYR*     6.0     0.3    -      -       -      -
     52I  MET*     3.7     8.8    -      -       -      -
     55I  GLU*     2.9    50.9    -      -       +      +
     56I  GLY*     2.6    16.3    +      -       -      +
     58I  GLU*     1.3    78.7    -      -       -      +
     60I  TRP*     1.3    80.0    +      +       -      -
     62I  ARG*     3.1    33.2    -      -       -      +
     63I  GLU*     2.5    57.5    +      -       +      +
    167I  TRP*     4.3    10.5    -      +       +      -
    171I  TYR*     3.5    28.0    +      +       -      -
      1Q  GLU*     5.2     0.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 60 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34I  VAL*     3.9    16.2    -      -       +      -
     44I  ARG*     3.7    19.1    -      -       -      +
     45I  TYR*     3.3    52.7    -      +       +      -
     46I  GLU      3.4     9.2    -      -       -      -
     47I  PRO*     3.3    36.5    -      -       +      +
     52I  MET*     3.3    29.5    +      -       -      -
     53I  GLU*     4.9     4.6    -      -       -      +
     55I  GLU*     4.1     4.6    -      -       -      +
     56I  GLY      2.5    33.3    +      -       -      +
     57I  PRO*     3.4    20.4    -      -       +      -
     59I  TYR*     1.3    93.8    -      +       -      +
     61I  GLU*     1.3    58.8    +      -       -      +
     63I  GLU*     5.0     1.8    -      -       +      -
     64I  THR*     2.7    38.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 61 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44I  ARG*     4.1    19.6    +      -       -      +
     57I  PRO      3.0    26.7    +      -       -      +
     58I  GLU*     3.3     7.6    -      -       -      +
     60I  TRP*     1.3    74.8    -      -       -      +
     62I  ARG*     1.3    65.8    +      -       -      +
     64I  THR*     3.6     5.9    -      -       -      +
     65I  GLN*     2.8    54.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 62 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26C  TYR*     3.9    33.7    -      -       +      +
     27C  SER*     4.3     9.4    -      -       -      -
     28C  ALA*     3.8    12.7    -      -       -      +
     99C  GLY      5.3     3.3    -      -       -      +
    100C  PHE*     4.9     8.5    -      -       +      -
     58I  GLU      2.4    28.6    +      -       -      +
     59I  TYR*     3.1    22.5    -      -       -      +
     61I  GLU*     1.3    74.2    -      -       -      +
     63I  GLU*     1.3    95.8    +      -       -      +
     65I  GLN*     3.2     6.1    +      -       -      +
     66I  LYS*     2.9    26.7    +      -       -      +
    167I  TRP*     3.1    39.4    -      -       -      -
      1Q  GLU*     2.3    34.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 63 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7I  TYR*     4.8     1.9    +      -       -      -
     45I  TYR*     4.0    33.6    +      -       +      -
     59I  TYR*     2.5    46.7    +      -       +      +
     60I  TRP*     4.2     3.6    -      -       +      +
     62I  ARG*     1.3   104.3    +      -       -      +
     64I  THR*     1.3    67.4    +      -       -      +
     66I  LYS*     2.6    24.0    +      -       -      +
     67I  ALA*     2.8    23.9    +      -       -      +
      1Q  GLU*     4.1     3.7    -      -       -      -
      2Q  GLN*     3.3    30.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 64 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36I  PHE*     4.8     2.0    -      -       +      -
     43I  PRO      3.7     9.9    -      -       -      +
     44I  ARG*     3.5    33.1    -      -       +      +
     45I  TYR*     2.8    32.1    +      -       -      +
     60I  TRP      2.7    28.1    +      -       -      -
     61I  GLU*     3.6     9.0    -      -       -      +
     63I  GLU*     1.3    73.1    -      -       -      +
     65I  GLN*     1.3    70.6    +      -       -      +
     67I  ALA*     3.3     4.2    -      -       -      +
     68I  LYS*     3.2    26.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 65 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100C  PHE*     3.5    50.1    -      -       +      +
     61I  GLU*     2.8    48.8    +      -       +      +
     62I  ARG      3.4     5.4    -      -       -      +
     64I  THR*     1.3    82.7    -      -       -      +
     66I  LYS*     1.3    65.3    +      -       -      +
     68I  LYS*     3.0    22.8    +      -       -      +
     69I  GLY*     3.1     9.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 66 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99C  GLY      5.3     9.2    -      -       -      +
    100C  PHE*     4.2    13.8    -      -       -      +
     62I  ARG*     2.9    29.2    +      -       -      +
     63I  GLU*     2.6    35.8    +      -       -      +
     65I  GLN*     1.3    74.1    -      -       -      +
     67I  ALA*     1.3    63.4    +      -       -      +
     69I  GLY*     2.9    12.3    +      -       -      -
     70I  ASN*     2.9    36.3    +      -       -      +
      1Q  GLU*     3.1     9.2    +      -       -      -
      2Q  GLN*     2.8    49.0    +      -       +      +
      3Q  TYR      4.0     4.5    -      -       -      +
      4Q  LYS*     4.4    15.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 67 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22I  TYR*     3.6     5.9    -      -       -      -
     24I  GLU*     3.6    15.7    -      -       -      +
     36I  PHE*     3.7    19.1    -      -       +      -
     45I  TYR*     3.5    26.0    -      -       +      -
     63I  GLU      2.8    11.3    +      -       -      +
     64I  THR      3.3    11.9    -      -       -      +
     66I  LYS*     1.3    77.3    -      -       -      +
     68I  LYS*     1.3    57.3    +      -       -      +
     70I  ASN*     3.4     3.4    +      -       -      +
     71I  GLU*     2.9    30.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 68 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36I  PHE*     3.8    10.8    -      -       +      -
     38I  SER*     4.2     4.2    -      -       -      -
     43I  PRO*     3.0    47.3    -      -       -      +
     64I  THR*     3.2    14.3    +      -       +      +
     65I  GLN*     3.0    18.8    +      -       -      +
     67I  ALA*     1.3    78.5    -      -       -      +
     69I  GLY*     1.3    64.6    +      -       -      +
     71I  GLU*     3.2    36.9    +      -       -      +
     72I  GLN*     3.5    11.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 69 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100C  PHE      4.9     7.0    -      -       -      -
    101C  ALA*     5.2     1.1    -      -       -      -
     50D  TYR*     3.6    28.4    -      -       -      -
     65I  GLN      3.1     7.5    +      -       -      -
     66I  LYS      2.9     9.6    +      -       -      -
     68I  LYS*     1.3    76.0    -      -       -      +
     70I  ASN*     1.3    57.6    +      -       -      -
     71I  GLU      3.0     5.4    +      -       -      -
     72I  GLN*     3.0    16.2    +      -       -      +
     73I  SER*     3.1    10.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASN 70 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100C  PHE      5.5     0.5    -      -       -      +
    101C  ALA*     6.0     0.7    -      -       -      -
     22I  TYR*     3.6    13.4    +      -       -      +
     24I  GLU*     4.1     3.2    +      -       -      -
     66I  LYS*     2.9    41.1    +      -       -      +
     67I  ALA*     4.0     6.2    -      -       -      +
     69I  GLY*     1.3    73.5    -      -       -      +
     71I  GLU*     1.3    61.3    +      -       -      +
     72I  GLN      3.4     0.2    -      -       -      -
     73I  SER*     3.4    14.4    -      -       -      -
     74I  PHE*     3.1    27.6    +      -       +      -
      2Q  GLN*     3.8    12.5    -      -       -      +
      3Q  TYR      3.6    17.2    +      -       -      -
      4Q  LYS*     4.0    15.2    -      -       -      +
      5Q  PHE*     4.4    17.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 71 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20I  PRO      4.4     8.3    -      -       -      +
     22I  TYR*     3.6    29.5    -      -       +      +
     36I  PHE*     5.1     0.3    -      -       -      -
     38I  SER*     3.1    27.7    +      -       -      -
     67I  ALA      2.9    15.0    +      -       -      +
     68I  LYS*     3.2    41.4    +      -       -      +
     69I  GLY      3.0     0.6    -      -       -      -
     70I  ASN*     1.3    75.5    -      -       -      +
     72I  GLN*     1.3    65.4    +      -       +      +
     74I  PHE*     3.1     6.8    +      -       -      +
     75I  ARG*     2.9    45.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 72 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50D  TYR*     3.6    14.8    -      -       +      -
     54D  SER*     4.6     4.8    +      -       -      -
     56D  GLU*     3.0    38.4    +      -       +      +
     68I  LYS      4.1     9.2    -      -       -      +
     69I  GLY*     3.0     9.2    +      -       -      +
     71I  GLU*     1.3    76.5    -      -       +      +
     73I  SER*     1.3    70.2    +      -       -      +
     75I  ARG*     2.6    60.9    +      -       -      +
     76I  VAL*     2.9    19.4    +      -       -      +
     79I  ARG*     5.7     0.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 73 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50D  TYR*     4.3    15.3    -      -       -      -
     69I  GLY      3.1     4.2    +      -       -      -
     70I  ASN*     3.4    23.3    -      -       -      -
     72I  GLN*     1.3    77.4    -      -       -      +
     74I  PHE*     1.3    59.6    +      -       -      +
     76I  VAL      3.5     0.3    +      -       -      -
     77I  SER*     2.8    24.6    +      -       -      -
      5Q  PHE*     3.1    29.9    +      -       -      +
      6Q  TYR      3.8     0.9    -      -       -      -
      7Q  SER*     3.2    35.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 74 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9I  VAL*     3.3    22.2    -      -       +      -
     11I  ALA*     4.1    16.6    -      -       +      -
     22I  TYR*     3.4    25.6    -      +       +      -
     70I  ASN*     3.1    10.9    +      -       +      +
     71I  GLU      3.1     8.8    +      -       -      +
     72I  GLN      2.9     1.0    -      -       -      -
     73I  SER*     1.3    79.1    -      -       -      +
     75I  ARG*     1.3    58.9    +      -       -      +
     76I  VAL      3.1     1.8    -      -       -      -
     77I  SER*     3.6    16.2    -      -       -      -
     78I  LEU*     2.8    31.2    +      -       -      +
     95I  ILE*     3.7    31.4    -      -       +      +
     97I  VAL*     3.1    24.5    -      -       +      -
    116I  TYR*     3.8    23.6    -      +       -      -
      5Q  PHE*     4.6    23.1    -      +       +      -
      8Q  VAL      6.3     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 75 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19I  GLU*     2.6    53.8    +      -       -      +
     20I  PRO*     3.8    32.1    +      -       +      +
     71I  GLU*     2.9    33.8    +      -       +      +
     72I  GLN*     2.6    51.3    +      -       -      +
     74I  PHE*     1.3    72.8    -      -       -      +
     76I  VAL*     1.3    55.9    +      -       -      +
     78I  LEU*     3.3     7.3    -      -       -      +
     79I  ARG*     3.2    45.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 76 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30D  ASN*     5.7     0.7    -      -       -      +
     50D  TYR*     3.9    33.2    -      -       +      +
     51D  GLY*     4.3     0.9    -      -       -      -
     52D  ALA      4.0    28.5    -      -       -      +
     54D  SER*     4.4    10.3    -      -       -      +
     72I  GLN*     2.9    15.8    +      -       -      +
     73I  SER      3.8     4.9    -      -       -      +
     75I  ARG*     1.3    77.9    -      -       +      +
     77I  SER*     1.3    54.4    +      -       -      +
     78I  LEU      3.1     1.3    -      -       -      -
     79I  ARG*     3.9    24.7    -      -       -      +
     80I  THR*     2.6    53.3    +      -       -      +
      7Q  SER*     4.3     2.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 77 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73I  SER      2.8    18.4    +      -       -      -
     74I  PHE*     3.3    25.1    +      -       -      -
     76I  VAL*     1.3    74.4    -      -       -      +
     78I  LEU*     1.3    52.9    +      -       -      +
     80I  THR*     3.3     1.7    -      -       -      -
     81I  LEU*     2.5    50.2    +      -       -      +
    116I  TYR*     6.4     0.2    -      -       -      -
      7Q  SER*     4.2     9.1    -      -       -      -
      8Q  VAL*     4.0    28.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 78 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12I  VAL      4.3     0.2    -      -       -      -
     13I  SER*     3.4    25.8    -      -       -      +
     20I  PRO*     3.3    35.7    -      -       +      -
     74I  PHE      2.8    12.5    +      -       -      +
     75I  ARG      3.3     5.2    -      -       -      +
     77I  SER*     1.3    76.4    -      -       -      +
     79I  ARG*     1.3    64.5    +      -       -      +
     81I  LEU*     3.0     8.0    +      -       +      +
     82I  LEU*     2.8    34.1    +      -       +      +
     93I  HIS*     4.1    27.8    -      -       +      +
     94I  THR      4.5     1.3    -      -       -      +
     95I  ILE*     3.1    36.5    -      -       +      +
    118I  TYR*     5.6     4.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 79 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52D  ALA*     3.4    18.0    +      -       +      -
     53D  GLY*     2.6    30.9    +      -       -      -
     54D  SER*     4.5     1.0    -      -       -      -
     72I  GLN*     5.7     0.6    -      -       -      +
     75I  ARG*     3.2    36.5    +      -       -      +
     76I  VAL*     3.5    27.4    -      -       -      +
     78I  LEU*     1.3    79.4    -      -       -      +
     80I  THR*     1.3    63.4    +      -       -      +
     82I  LEU*     3.3    30.9    -      -       +      +
     83I  GLY*     3.7     3.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 80 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30D  ASN*     5.2     9.7    +      -       -      +
     52D  ALA*     5.0    10.3    +      -       +      +
     72D  GLN*     5.8     3.2    +      -       -      +
     76I  VAL*     2.6    41.4    +      -       -      +
     77I  SER*     3.3     7.2    -      -       -      -
     79I  ARG*     1.3    74.1    -      -       -      +
     81I  LEU*     1.3    65.6    +      -       -      +
     82I  LEU      3.3     0.3    +      -       -      -
     83I  GLY*     3.5     2.4    +      -       -      -
     84I  TYR*     3.0    58.5    +      -       +      +
    146I  LYS*     5.9     2.5    -      -       -      -
      7Q  SER*     5.5     0.7    -      -       -      -
      8Q  VAL*     4.8     6.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 81 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     77I  SER*     2.5    38.9    +      -       -      +
     78I  LEU*     3.6     8.3    -      -       +      +
     80I  THR*     1.3    69.1    -      -       -      +
     82I  LEU*     1.3    71.9    +      -       -      +
     84I  TYR*     3.0    20.0    +      -       +      +
     85I  TYR*     3.0    26.8    -      -       +      +
     95I  ILE*     4.8    18.4    -      -       +      -
    116I  TYR*     6.2     2.0    -      -       +      -
    118I  TYR*     4.5    23.3    -      -       +      -
    123I  TYR*     3.8    22.9    -      -       +      +
      8Q  VAL*     3.5    37.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 82 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     13I  SER*     5.5     3.1    -      -       -      +
     78I  LEU*     2.8    26.8    +      -       +      +
     79I  ARG*     3.3    26.9    -      -       +      +
     81I  LEU*     1.3    80.8    -      -       -      +
     83I  GLY*     1.3    64.7    +      -       -      +
     84I  TYR      2.9     0.3    +      -       -      -
     85I  TYR      3.0     9.2    +      -       -      -
     87I  GLN*     3.4    35.6    +      -       +      +
     89I  ALA*     5.2    16.8    -      -       +      -
     91I  GLY      5.7     2.7    -      -       -      +
     93I  HIS*     3.2    37.9    -      -       +      +
    118I  TYR*     4.6     3.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 83 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     79I  ARG      3.7     3.6    +      -       -      -
     80I  THR      3.5     5.6    +      -       -      -
     81I  LEU      3.4     0.4    -      -       -      -
     82I  LEU*     1.3    78.1    -      -       -      +
     84I  TYR*     1.3    56.2    +      -       -      +
     86I  ASN*     2.6    38.6    +      -       -      -
     87I  GLN      4.8     1.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 84 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80I  THR*     3.0    46.0    -      -       +      +
     81I  LEU*     3.0    26.8    +      -       +      +
     82I  LEU      2.9     0.6    +      -       -      -
     83I  GLY*     1.3    73.9    -      -       -      +
     85I  TYR*     1.3    73.5    +      -       +      +
     86I  ASN*     3.9     2.3    +      -       -      -
    123I  TYR*     2.9    29.2    -      -       -      -
    139I  ALA      4.2     3.6    -      -       -      -
    142I  ILE*     3.5    53.0    -      -       +      +
    143I  THR*     3.2    16.3    +      -       -      -
    146I  LYS*     4.3    12.6    -      -       -      +
      8Q  VAL*     4.4     2.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 85 (chain I). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     81I  LEU*     3.0    34.5    -      -       -      +
     82I  LEU      3.0     4.1    +      -       -      -
     83I  GLY      2.7     1.0    +      -       -      -
     84I  TYR*     1.3    88.7    -      -       +      +
     86I  ASN*     1.3    74.2    +      -       -      +
     87I  GLN*     3.3    13.9    +      -       +      +
    118I  TYR*     3.3    50.1    -      +       -      -
    123I  TYR*     3.1    31.9    -      -       -      -
    139I  ALA*     3.3    32.2    -      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il