Contacts of the helix formed by residues 845 - 916 (chain D) in PDB entry 1NKN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 845 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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882A ASN* 4.4 12.4 - - - +
883A ASP* 5.1 5.6 - - - +
886A GLY* 6.1 1.0 - - - -
843D GLU 2.6 15.5 + - - +
844D GLU* 1.3 68.7 - - - +
846D MET* 1.3 54.2 + - - +
847D LYS 2.9 3.1 - - - -
848D GLU* 2.7 52.9 + - + +
849D GLN* 3.1 12.6 + - + +
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Residues in contact with MET 846 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
845C GLU* 4.0 33.7 - - + +
846C MET* 3.5 32.6 - - + +
849C GLN* 3.6 35.9 - - + +
843D GLU 3.4 6.5 + - - +
844D GLU* 3.0 3.0 + - - +
845D GLU* 1.3 78.2 - - - +
847D LYS* 1.3 61.3 + - - +
849D GLN* 3.2 18.4 + - - +
850D LEU* 3.3 21.3 + - + +
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Residues in contact with LYS 847 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
844D GLU* 3.1 41.5 + - + +
845D GLU* 2.9 0.8 - - - +
846D MET* 1.3 81.1 - - - +
848D GLU* 1.3 61.8 + - - +
850D LEU* 3.2 13.0 + - - +
851D LYS* 3.0 47.0 + - + +
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Residues in contact with GLU 848 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
890A GLN* 4.4 5.7 + - - +
844D GLU 4.4 0.2 + - - -
845D GLU* 2.7 40.5 + - + +
847D LYS* 1.3 80.8 - - - +
849D GLN* 1.3 56.8 + - + +
851D LYS* 3.4 30.6 + - + +
852D GLN* 3.1 60.2 + - - +
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Residues in contact with GLN 849 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846C MET* 3.5 25.8 - - - +
849C GLN* 4.1 7.6 - - + -
850C LEU* 3.2 47.5 - - - +
853C MET* 2.9 36.5 - - + +
845D GLU* 3.1 14.1 + - + +
846D MET* 3.2 21.8 + - - +
848D GLU* 1.3 78.5 - - + +
850D LEU* 1.3 58.4 + - - +
852D GLN* 3.7 10.5 + - - +
853D MET 3.1 16.3 + - - -
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Residues in contact with LEU 850 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849C GLN* 3.1 35.9 - - - +
846D MET* 3.6 24.5 - - + +
847D LYS* 3.2 12.1 + - - +
848D GLU 3.2 0.4 - - - -
849D GLN* 1.3 76.4 - - - +
851D LYS* 1.3 58.0 + - + +
852D GLN 3.1 1.3 - - - -
853D MET* 3.0 10.6 + - + +
854D ASP* 2.6 42.0 + - - +
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Residues in contact with LYS 851 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
847D LYS* 3.0 40.8 + - + +
848D GLU* 3.4 28.5 + - + +
850D LEU* 1.3 77.1 - - + +
852D GLN* 1.3 61.3 + - + +
854D ASP* 3.6 8.3 + - - +
855D LYS* 3.4 18.4 + - - +
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Residues in contact with GLN 852 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
886A GLY* 5.2 2.4 + - - -
890A GLN* 2.7 42.0 - - - +
853C MET* 4.9 11.6 - - - +
848D GLU* 3.1 35.0 + - - +
849D GLN* 3.9 13.2 - - - +
850D LEU 3.1 0.2 - - - -
851D LYS* 1.3 74.5 - - - +
853D MET* 1.3 67.6 + - - +
855D LYS* 3.0 8.6 + - - +
856D MET* 2.9 25.9 + - + +
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Residues in contact with MET 853 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849C GLN* 3.9 19.5 - - - +
852C GLN* 3.9 38.8 - - + +
853C MET* 3.9 10.5 - - - -
855C LYS* 4.1 4.0 - - - +
856C MET* 3.6 25.1 - - - +
849D GLN 3.1 17.2 + - - +
850D LEU* 3.0 19.0 + - + +
852D GLN* 1.3 77.2 - - - +
854D ASP* 1.3 59.8 + - - +
856D MET* 3.3 11.6 + - - +
857D LYS* 2.8 47.3 + - + +
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Residues in contact with ASP 854 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
850D LEU* 2.6 34.6 + - - +
851D LYS* 3.8 8.7 - - - +
852D GLN 3.1 0.2 - - - -
853D MET* 1.3 79.3 - - - +
855D LYS* 1.3 65.7 + - - +
857D LYS* 3.2 15.9 + - - +
858D GLU* 3.0 30.9 + - + +
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Residues in contact with LYS 855 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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894A LYS* 6.3 0.7 - - - +
851D LYS 3.4 10.1 + - - +
852D GLN* 3.0 11.5 + - - +
854D ASP* 1.3 77.8 - - - +
856D MET* 1.3 62.3 + - - +
858D GLU* 3.2 29.0 + - - +
859D ASP* 3.1 38.3 + - - +
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Residues in contact with MET 856 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853C MET* 3.2 42.6 - - + +
856C MET* 3.7 26.0 - - + +
857C LYS* 3.6 39.3 - - - +
860C LEU* 3.5 23.9 - - + +
852D GLN* 2.9 11.5 + - + +
853D MET* 3.4 19.5 - - - +
855D LYS* 1.3 78.5 - - - +
857D LYS* 1.3 57.7 + - - +
859D ASP* 3.4 9.6 + - - +
860D LEU* 3.1 26.9 + - - +
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Residues in contact with LYS 857 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
856C MET* 3.3 30.7 - - + -
853D MET* 2.8 44.6 + - + +
854D ASP* 3.2 15.5 + - - +
856D MET* 1.3 75.8 - - - +
858D GLU* 1.3 64.3 + - + +
860D LEU* 3.5 6.1 + - - +
861D ALA* 3.1 21.8 + - - +
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Residues in contact with GLU 858 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
854D ASP* 3.0 19.3 + - + +
855D LYS* 3.2 33.2 + - - +
857D LYS* 1.3 75.6 - - + +
859D ASP* 1.3 66.4 + - - +
861D ALA* 3.3 6.9 + - - +
862D LYS* 3.0 25.7 + - - +
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Residues in contact with ASP 859 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894A LYS* 4.8 12.9 + - - -
897A GLU* 4.8 8.2 - - - +
860C LEU* 3.9 18.5 - - + +
855D LYS* 3.1 36.7 + - - +
856D MET* 3.7 10.0 - - - +
857D LYS 3.3 0.2 - - - -
858D GLU* 1.3 75.8 - - - +
860D LEU* 1.3 59.8 + - - +
862D LYS* 3.3 29.4 + - + +
863D THR* 2.9 34.5 + - - +
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Residues in contact with LEU 860 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
856C MET* 3.7 35.4 - - + -
859C ASP* 4.0 18.8 - - + +
860C LEU* 3.6 30.9 - - + +
863C THR* 4.0 13.7 - - + +
856D MET 3.1 13.7 + - - +
857D LYS* 3.6 9.4 - - - +
859D ASP* 1.3 78.8 - - - +
861D ALA* 1.3 57.3 + - - +
863D THR* 3.3 2.8 + - - -
864D GLU* 2.8 42.6 + - + +
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Residues in contact with ALA 861 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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857D LYS 3.1 10.8 + - - +
858D GLU* 3.3 11.2 + - - +
860D LEU* 1.3 79.9 - - - +
862D LYS* 1.3 62.1 + - - +
864D GLU* 3.9 4.9 - - - +
865D ARG* 3.0 42.4 + - - +
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Residues in contact with LYS 862 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894A LYS* 5.9 2.2 - - - +
901A LYS* 6.1 2.3 - - - +
858D GLU 3.0 15.8 + - - +
859D ASP* 3.3 29.5 + - + +
861D ALA* 1.3 76.1 - - - +
863D THR* 1.3 66.0 + - - +
865D ARG* 3.3 20.1 + - - +
866D ILE* 3.1 40.8 + - + +
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Residues in contact with THR 863 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
901A LYS* 5.8 0.3 + - - -
860C LEU* 4.6 7.0 - - - +
863C THR* 3.4 28.3 - - + +
864C GLU* 3.7 34.5 + - + +
867C LYS* 4.5 11.6 - - + +
859D ASP* 2.9 19.2 + - - +
860D LEU* 3.6 5.8 - - - -
862D LYS* 1.3 77.0 - - - +
864D GLU* 1.3 66.4 + - - +
866D ILE* 2.9 19.2 + - - +
867D LYS* 2.9 12.3 + - - +
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Residues in contact with GLU 864 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
863C THR* 4.1 15.1 + - + +
860D LEU* 2.8 31.1 + - + +
861D ALA* 3.9 5.6 - - - +
863D THR* 1.3 72.0 - - - +
865D ARG* 1.3 62.9 + - - +
867D LYS* 3.0 33.5 + - - +
868D LYS* 3.0 27.7 + - - +
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Residues in contact with ARG 865 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
861D ALA* 3.0 43.6 + - - +
862D LYS* 3.3 16.1 - - - +
864D GLU* 1.3 77.3 - - - +
866D ILE* 1.3 63.4 + - + +
868D LYS* 3.7 7.1 + - - +
869D GLU* 3.4 18.4 + - - +
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Residues in contact with ILE 866 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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906B GLU* 6.0 1.8 - - - +
867C LYS* 4.5 19.1 - - + -
871C GLU* 5.2 2.7 - - - +
862D LYS* 3.1 29.3 + - + +
863D THR* 2.9 10.6 + - - +
865D ARG* 1.3 77.3 - - + +
867D LYS* 1.3 65.5 + - - +
869D GLU* 2.9 21.8 + - - +
870D LEU* 2.9 35.9 + - + +
----------------------------------------------------------
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Residues in contact with LYS 867 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
863C THR* 3.4 29.9 + - + +
866C ILE* 4.0 32.5 - - - +
867C LYS* 4.5 15.0 - - + +
870C LEU* 3.9 8.9 - - + +
863D THR 2.9 17.3 + - - +
864D GLU* 3.0 35.8 + - - +
866D ILE* 1.3 73.7 - - - +
868D LYS* 1.3 52.0 + - - +
870D LEU* 3.0 13.0 + - - +
871D GLU* 2.6 68.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 868 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
864D GLU* 3.0 20.4 + - - +
865D ARG* 3.9 7.0 - - - +
867D LYS* 1.3 77.5 - - + +
869D GLU* 1.3 60.3 + - - +
871D GLU* 3.4 16.5 + - - +
872D GLU* 3.0 51.7 + - + +
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Residues in contact with GLU 869 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865D ARG 3.4 10.5 + - - +
866D ILE* 2.9 23.1 + - - +
868D LYS* 1.3 80.7 - - - +
870D LEU* 1.3 63.7 + - + +
872D GLU* 3.4 15.5 + - - +
873D GLN* 3.2 39.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 870 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913B LYS* 6.1 2.5 - - - -
867C LYS* 3.5 25.8 - - + +
870C LEU* 4.0 17.3 - - + -
871C GLU* 3.3 44.9 - - + +
874C ASN* 4.7 7.9 - - - +
866D ILE* 2.9 22.1 + - + +
867D LYS* 3.0 7.6 + - - +
869D GLU* 1.3 76.0 - - + +
871D GLU* 1.3 62.3 + - - +
873D GLN* 3.1 30.1 - - + +
874D ASN* 2.8 37.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 871 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
866C ILE* 4.9 2.1 - - - +
870C LEU* 3.5 21.0 - - + +
867D LYS* 2.6 50.2 + - - +
868D LYS* 3.6 18.5 - - + +
870D LEU* 1.3 73.9 - - - +
872D GLU* 1.3 63.2 + - + +
874D ASN* 3.3 7.7 + - - +
875D VAL* 3.1 28.6 + - + +
----------------------------------------------------------
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Residues in contact with GLU 872 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
868D LYS* 3.0 39.5 + - + +
869D GLU* 3.8 11.9 - - - +
870D LEU 3.3 0.2 - - - -
871D GLU* 1.3 75.8 - - + +
873D GLN* 1.3 64.2 + - - +
875D VAL* 3.1 18.9 + - - +
876D THR* 3.2 15.1 + - - -
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Residues in contact with GLN 873 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913B LYS* 5.3 4.6 - - - -
874C ASN* 3.6 17.6 + - - +
869D GLU* 3.2 27.0 + - - +
870D LEU* 3.1 40.6 - - - +
872D GLU* 1.3 76.8 - - - +
874D ASN* 1.3 60.1 + - - +
876D THR* 3.3 8.7 + - - +
877D LEU* 2.9 33.7 + - + +
----------------------------------------------------------
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Residues in contact with ASN 874 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
870C LEU* 3.3 37.6 + - + +
873C GLN* 3.2 28.5 + - - +
874C ASN* 2.9 36.1 - - - +
877C LEU* 3.6 8.3 - - + +
870D LEU* 2.8 26.2 + - - +
871D GLU* 3.3 4.9 + - - +
873D GLN* 1.3 73.4 - - - +
875D VAL* 1.3 57.9 + - + +
877D LEU* 4.2 0.4 - - - -
878D LEU* 2.9 37.1 + - + +
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Residues in contact with VAL 875 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
871D GLU 3.1 15.1 + - - +
872D GLU* 3.1 11.4 + - - +
873D GLN 3.1 0.4 - - - -
874D ASN* 1.3 76.0 - - + +
876D THR* 1.3 67.3 + - - +
878D LEU* 3.3 8.6 + - + +
879D GLU* 3.0 37.8 + - + +
----------------------------------------------------------
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Residues in contact with THR 876 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
872D GLU 3.2 11.4 + - - -
873D GLN* 3.3 11.0 + - - -
875D VAL* 1.3 80.6 - - - +
877D LEU* 1.3 65.3 + - + +
879D GLU* 3.4 13.7 + - + +
880D GLN* 3.2 45.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 877 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
874C ASN* 3.6 46.9 - - - +
877C LEU* 3.3 28.9 - - + +
878C LEU* 4.3 20.6 - - + -
881C LYS* 4.3 13.8 - - + +
873D GLN* 2.9 19.2 + - + +
874D ASN* 4.2 0.2 - - - +
875D VAL 3.2 0.2 - - - -
876D THR* 1.3 80.0 - - + +
878D LEU* 1.3 56.4 + - - +
880D GLN* 3.1 21.0 + - - +
881D LYS* 2.9 29.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 878 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
873C GLN* 4.7 15.9 - - - +
877C LEU* 3.4 27.8 - - + -
874D ASN* 2.9 26.2 + - + +
875D VAL* 3.3 9.4 + - - +
877D LEU* 1.3 73.4 - - - +
879D GLU* 1.3 67.3 + - - +
881D LYS* 3.3 29.8 + - - +
882D ASN* 3.1 37.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 879 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
875D VAL* 3.0 29.4 + - + +
876D THR* 3.6 16.9 + - - +
877D LEU 3.3 0.2 - - - -
878D LEU* 1.3 75.9 - - - +
880D GLN* 1.3 59.3 + - + +
882D ASN* 3.2 5.6 + - - +
883D ASP* 2.6 41.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 880 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
881C LYS* 2.6 40.9 + - - +
876D THR* 3.2 36.0 + - + +
877D LEU* 3.1 18.1 + - - +
879D GLU* 1.3 78.9 - - + +
881D LYS* 1.3 63.2 + - - +
883D ASP* 3.1 9.5 + - + +
884D LEU* 2.9 31.2 + - + +
----------------------------------------------------------
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Residues in contact with LYS 881 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877C LEU* 4.1 12.1 - - + -
880C GLN* 3.4 37.2 - - + +
881C LYS* 4.3 12.9 - - + +
884C LEU* 3.4 24.6 - - + +
877D LEU 2.9 19.0 + - - +
878D LEU* 3.3 23.3 + - - +
880D GLN* 1.3 73.1 - - - +
882D ASN* 1.3 81.0 + - - +
884D LEU 3.4 0.2 + - - -
885D PHE* 2.9 32.9 + - + +
----------------------------------------------------------
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Residues in contact with ASN 882 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
878D LEU* 3.1 19.0 + - - +
879D GLU* 3.4 9.5 - - - +
881D LYS* 1.3 99.7 + - - +
883D ASP* 1.3 68.7 + - - +
885D PHE* 3.2 7.7 + - - +
886D GLY* 2.9 21.7 + - - -
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Residues in contact with ASP 883 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
879D GLU* 2.6 35.6 + - - +
880D GLN* 3.1 9.2 + - + +
882D ASN* 1.3 77.4 - - - +
884D LEU* 1.3 61.3 + - + +
886D GLY* 3.6 2.2 + - - -
887D SER* 3.1 24.6 + - - -
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Residues in contact with LEU 884 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
881C LYS* 4.2 23.3 - - + +
884C LEU* 3.6 29.2 - - + -
885C PHE* 3.8 35.9 - - + -
888C MET* 3.6 27.2 - - + +
880D GLN* 2.9 18.9 + - + +
881D LYS 3.6 4.5 - - - +
883D ASP* 1.3 75.4 - - + +
885D PHE* 1.3 55.1 + - - +
886D GLY 2.9 1.6 - - - -
887D SER* 2.6 26.9 + - - +
888D MET* 2.7 18.3 + - - +
----------------------------------------------------------
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Residues in contact with PHE 885 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
884C LEU* 3.4 25.8 - - + +
881D LYS* 2.9 23.0 + - + +
882D ASN* 3.6 7.9 - - - +
884D LEU* 1.3 75.4 - - - +
886D GLY* 1.3 61.1 + - - +
888D MET* 3.4 24.8 + - + +
889D LYS* 3.1 57.0 + - + +
----------------------------------------------------------
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Residues in contact with GLY 886 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
882D ASN 2.9 15.2 + - - -
883D ASP* 4.0 3.1 - - - -
884D LEU 2.9 0.2 - - - -
885D PHE* 1.3 78.7 - - - +
887D SER* 1.3 59.0 + - - +
889D LYS* 3.4 9.5 + - - +
890D GLN* 3.3 24.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 887 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
888C MET* 3.8 22.4 - - - -
883D ASP 3.1 14.2 + - - -
884D LEU* 2.6 17.2 + - - +
886D GLY* 1.3 69.7 - - - +
888D MET* 1.3 63.1 + - - -
889D LYS 3.0 2.1 + - - -
890D GLN* 3.2 22.2 + - - +
891D LEU* 3.3 20.3 + - - +
----------------------------------------------------------
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Residues in contact with MET 888 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
884C LEU* 3.9 17.5 - - + -
887C SER* 3.8 26.5 - - - -
888C MET* 4.1 15.1 - - + +
891C LEU* 3.4 25.1 - - + +
884D LEU 2.7 14.3 + - - +
885D PHE* 3.7 36.8 - - + +
887D SER* 1.3 76.5 - - - +
889D LYS* 1.3 67.4 + - - +
891D LEU* 4.5 0.2 - - - -
892D GLU* 2.9 53.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 889 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
885D PHE* 3.1 45.8 + - + +
886D GLY* 3.5 11.7 - - - +
887D SER 3.0 0.2 - - - -
888D MET* 1.3 83.4 - - - +
890D GLN* 1.3 65.8 + - - +
892D GLU* 3.0 26.4 + - - +
893D ASP* 3.0 30.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 890 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
886D GLY 3.3 17.4 + - - +
887D SER* 3.2 11.7 + - - +
889D LYS* 1.3 75.8 - - + +
891D LEU* 1.3 55.2 + - + +
893D ASP* 2.9 13.3 + - - +
894D LYS* 2.7 34.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU 891 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
888C MET* 3.8 33.4 - - + +
891C LEU* 3.7 37.7 - - + -
892C GLU* 4.0 18.4 - - + -
895C VAL* 4.2 14.3 - - + +
887D SER* 3.3 15.6 + - - +
890D GLN* 1.3 80.5 - - + +
892D GLU* 1.3 51.3 + - - +
894D LYS* 3.0 9.9 + - + +
895D VAL* 2.7 40.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 892 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891C LEU* 3.7 20.4 - - + +
888D MET* 2.9 34.7 + - - +
889D LYS* 3.0 44.1 + - - +
890D GLN 3.3 0.6 - - - -
891D LEU* 1.3 72.1 - - - +
893D ASP* 1.3 68.5 + - - +
895D VAL* 3.3 8.8 + - - +
896D GLU* 2.9 24.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 893 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
889D LYS* 3.0 19.3 + - - +
890D GLN* 2.9 14.3 + - - +
892D GLU* 1.3 78.2 - - - +
894D LYS* 1.3 62.4 + - - +
896D GLU* 3.0 11.3 + - - +
897D GLU* 2.9 23.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 894 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
895C VAL* 4.0 17.5 - - + -
899C LEU* 5.4 5.6 - - - +
890D GLN 2.7 15.6 + - - +
891D LEU* 3.2 14.1 - - + +
893D ASP* 1.3 72.4 - - - +
895D VAL* 1.3 64.8 + - - +
897D GLU* 3.0 34.5 + - - +
898D LEU* 2.8 53.1 + - + +
901D LYS* 4.9 2.8 - - - +
----------------------------------------------------------
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Residues in contact with VAL 895 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891C LEU* 4.2 14.8 - - + +
894C LYS* 4.0 28.9 - - + -
895C VAL* 3.6 21.5 - - + +
898C LEU* 3.7 18.4 - - + +
891D LEU 2.7 24.9 + - - +
892D GLU* 3.5 8.1 - - - +
894D LYS* 1.3 73.2 - - - +
896D GLU* 1.3 56.7 + - - +
898D LEU* 4.5 0.9 - - - -
899D LEU* 3.0 38.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 896 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
892D GLU 2.9 14.6 + - - +
893D ASP* 3.0 12.6 + - - +
895D VAL* 1.3 75.1 - - - +
897D GLU* 1.3 62.5 + - - +
899D LEU* 3.4 11.6 + - + +
900D SER* 2.9 28.2 + - - -
----------------------------------------------------------
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Residues in contact with GLU 897 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
893D ASP 2.9 10.9 + - - +
894D LYS* 3.5 35.4 + - - +
896D GLU* 1.3 76.3 - - - +
898D LEU* 1.3 64.9 + - - +
900D SER* 2.8 18.0 + - - -
901D LYS* 2.9 52.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 898 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
895C VAL* 3.9 26.0 - - + +
898C LEU* 3.6 37.2 - - + -
899C LEU* 4.0 23.3 - - + +
902C ASN* 3.5 10.4 + - - +
894D LYS* 2.8 48.0 + - + +
897D GLU* 1.3 73.3 - - - +
899D LEU* 1.3 57.3 + - - +
901D LYS* 3.3 27.9 + - + +
902D ASN* 2.8 31.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 899 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894C LYS* 5.4 7.4 - - - -
898C LEU* 4.1 21.7 - - + +
895D VAL* 3.0 30.1 + - + +
896D GLU* 3.5 12.6 - - + +
898D LEU* 1.3 76.4 - - - +
900D SER* 1.3 58.0 + - - +
902D ASN* 3.2 12.9 - - - +
903D TYR* 2.9 28.4 + - - +
----------------------------------------------------------
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Residues in contact with SER 900 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896D GLU 2.9 13.9 + - - -
897D GLU* 2.8 13.2 + - - -
899D LEU* 1.3 73.6 - - - +
901D LYS* 1.3 67.4 + - - -
903D TYR* 2.9 17.4 + - - +
904D HIS* 3.1 34.3 + - - -
----------------------------------------------------------
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Residues in contact with LYS 901 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
899C LEU* 6.2 0.2 - - - +
902C ASN* 3.5 20.4 - - - +
894D LYS* 4.9 3.2 - - - +
897D GLU* 2.9 50.9 + - + +
898D LEU* 3.6 16.1 - - + +
900D SER* 1.3 75.1 + - - +
902D ASN* 1.3 64.3 + - - +
904D HIS* 3.0 10.8 + - - +
905D LEU* 2.9 31.0 + - + +
----------------------------------------------------------
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Residues in contact with ASN 902 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
898C LEU* 4.5 9.2 - - + +
901C LYS* 4.0 23.4 - - - +
902C ASN* 2.9 24.8 + - - +
905C LEU* 3.6 17.5 - - - +
898D LEU 2.8 18.7 + - - +
899D LEU* 3.2 17.6 - - - +
901D LYS* 1.3 78.5 - - - +
903D TYR* 1.3 56.9 + - - +
905D LEU* 3.4 2.1 + - - +
906D GLU* 3.0 39.2 + - - +
----------------------------------------------------------
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Residues in contact with TYR 903 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
899D LEU 2.9 12.0 + - - +
900D SER* 2.9 10.5 + - - +
902D ASN* 1.3 76.4 + - - +
904D HIS* 1.3 93.9 + + - +
906D GLU* 3.5 7.6 + - + +
907D ASN* 3.0 51.8 + - - -
----------------------------------------------------------
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Residues in contact with HIS 904 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
900D SER* 3.1 34.1 + - - -
901D LYS* 3.0 10.1 + - - +
903D TYR* 1.3 99.9 - + - +
905D LEU* 1.3 62.4 + - + +
907D ASN* 3.4 11.4 + - - +
908D GLU* 3.3 23.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 905 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
902C ASN* 3.8 27.8 - - + +
905C LEU* 3.6 37.7 - - + -
906C GLU* 3.8 18.6 - - + +
909C VAL* 4.3 20.5 - - + +
901D LYS* 2.9 21.1 + - + +
902D ASN 3.7 0.2 - - - +
904D HIS* 1.3 74.8 - - + +
906D GLU* 1.3 67.0 + - - +
907D ASN 3.0 1.8 - - - -
908D GLU* 2.8 21.5 + - + +
909D VAL* 3.1 15.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 906 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905C LEU* 3.7 29.1 - - + +
902D ASN* 3.0 31.0 + - - +
903D TYR* 3.8 8.5 - - + +
905D LEU* 1.3 75.3 - - - +
907D ASN* 1.3 59.2 + - - +
909D VAL* 3.5 10.2 + - - +
910D ALA* 3.1 26.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 907 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
903D TYR* 3.0 54.1 + - - -
904D HIS* 3.6 12.2 + - - +
905D LEU 3.0 1.0 - - - -
906D GLU* 1.3 77.9 - - - +
908D GLU* 1.3 61.3 + - + +
910D ALA* 3.2 8.2 + - - +
911D ARG* 2.8 31.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 908 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
909C VAL* 4.0 20.4 - - + +
913C LYS* 3.7 18.0 + - - -
904D HIS 3.3 11.4 + - - +
905D LEU* 2.8 14.1 + - + +
907D ASN* 1.3 78.9 - - + +
909D VAL* 1.3 60.4 + - - +
911D ARG* 2.7 40.7 + - - +
912D LEU* 3.0 35.8 + - + +
----------------------------------------------------------
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Residues in contact with VAL 909 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905C LEU* 4.1 19.7 - - + -
908C GLU* 3.7 22.0 - - + +
909C VAL* 3.9 19.1 - - + +
912C LEU* 4.5 4.7 - - + -
905D LEU 3.1 14.6 + - - +
906D GLU* 3.7 14.8 - - - +
908D GLU* 1.3 75.6 - - - +
910D ALA* 1.3 66.9 + - - +
912D LEU* 3.4 1.4 + - - +
913D LYS* 2.9 59.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 910 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
906D GLU 3.1 13.1 + - - +
907D ASN* 3.5 11.0 - - - +
909D VAL* 1.3 82.3 - - - +
911D ARG* 1.3 66.3 + - - +
913D LYS* 3.5 7.1 + - - +
914D LYS* 3.2 30.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 911 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913C LYS* 4.7 1.8 - - - +
918C GLU* 2.8 40.4 + - - -
907D ASN 2.8 17.3 + - - +
908D GLU* 2.7 45.5 + - - +
910D ALA* 1.3 76.2 - - - +
912D LEU* 1.3 86.8 + - - +
914D LYS* 3.0 25.9 + - - +
915D LEU* 3.5 19.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 912 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
909C VAL* 3.7 29.2 - - + +
912C LEU* 3.4 36.8 - - + +
913C LYS* 3.8 14.4 - - + +
916C VAL* 4.8 6.7 - - + -
918C GLU* 3.7 12.1 - - - +
908D GLU* 3.0 18.0 + - - +
909D VAL* 5.1 0.2 - - - -
911D ARG* 1.3 116.6 - - - +
913D LYS* 1.3 56.0 + - - +
915D LEU* 2.7 32.5 + - + +
916D VAL* 2.9 17.5 + - + +
----------------------------------------------------------
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Residues in contact with LYS 913 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
908C GLU* 3.5 32.4 + - - -
911C ARG* 5.0 0.2 - - - +
912C LEU* 3.4 15.0 - - + -
909D VAL* 2.9 33.6 + - + +
910D ALA* 3.7 7.0 - - - +
912D LEU* 1.3 71.8 - - - +
914D LYS* 1.3 56.9 + - - +
916D VAL* 3.8 7.2 - - - -
917D GLY 3.2 7.1 + - - -
918D GLU* 2.9 65.9 + - + +
----------------------------------------------------------
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Residues in contact with LYS 914 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
910D ALA* 3.2 22.4 + - - +
911D ARG* 3.0 16.8 + - - +
912D LEU 2.8 0.6 + - - -
913D LYS* 1.3 76.9 - - - +
915D LEU* 1.3 66.0 + - + +
917D GLY* 3.6 8.7 + - - -
918D GLU 5.2 0.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 915 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
916C VAL* 3.9 22.1 - - + +
918C GLU* 3.9 21.3 - - - +
911D ARG* 3.8 26.9 - - + +
912D LEU* 2.7 14.1 + - - +
914D LYS* 1.3 77.4 - - + +
916D VAL* 1.3 60.7 + - - +
917D GLY 3.4 0.6 + - - -
----------------------------------------------------------
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Residues in contact with VAL 916 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912C LEU* 3.9 13.9 - - + -
915C LEU* 3.4 23.1 - - + -
916C VAL* 3.1 26.9 - - + -
912D LEU 2.9 22.4 + - - +
913D LYS* 3.5 3.3 + - - +
915D LEU* 1.3 77.0 - - - +
917D GLY* 1.3 64.9 + - - +
918D GLU* 3.3 23.9 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il