Contacts of the helix formed by residues 845 - 917 (chain B) in PDB entry 1NKN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 845 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
843B GLU* 3.0 7.7 - - - +
844B GLU* 1.3 77.7 - - - +
846B MET* 1.3 63.4 + - - +
847B LYS 3.3 1.6 - - - -
848B GLU* 3.1 28.5 + - + +
849B GLN* 3.5 21.0 + - + +
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Residues in contact with MET 846 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846A MET* 4.5 29.4 - - + -
849A GLN* 4.6 2.7 - - - +
843B GLU 4.1 15.1 + - - +
844B GLU* 4.4 7.4 - - - +
845B GLU* 1.3 73.6 - - - +
847B LYS* 1.3 88.6 + - - +
848B GLU 3.0 2.4 + - - -
849B GLN* 3.2 5.0 + - - +
850B LEU* 2.6 67.2 + - + +
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Residues in contact with LYS 847 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
844B GLU* 3.9 13.0 + - + +
845B GLU 3.3 0.4 - - - -
846B MET* 1.3 94.9 - - - +
848B GLU* 1.3 61.3 + - - +
850B LEU* 4.0 9.0 - - + -
851B LYS* 3.2 33.3 + - + +
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Residues in contact with GLU 848 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
844B GLU 4.9 0.4 + - - -
845B GLU* 3.1 24.3 + - + +
846B MET 3.0 0.6 - - - -
847B LYS* 1.3 80.7 - - - +
849B GLN* 1.3 65.0 + - + +
851B LYS* 3.8 4.4 - - - +
852B GLN* 3.0 32.5 + - + +
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Residues in contact with GLN 849 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849A GLN* 4.0 21.3 + - - +
850A LEU* 5.6 5.6 - - - +
853A MET* 3.5 28.8 - - - +
845B GLU* 3.5 21.6 + - + +
846B MET* 3.2 6.1 + - - +
848B GLU* 1.3 79.5 - - + +
850B LEU* 1.3 58.2 + - - +
851B LYS 3.0 2.2 - - - -
852B GLN* 3.5 21.0 - - - +
853B MET* 2.7 34.3 + - - +
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Residues in contact with LEU 850 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849A GLN* 3.7 23.9 + - + +
846B MET* 2.6 54.1 + - + +
847B LYS* 4.0 9.0 - - + +
849B GLN* 1.3 73.0 - - - +
851B LYS* 1.3 59.6 + - - +
853B MET* 3.5 16.2 - - + +
854B ASP* 3.2 18.7 - - - +
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Residues in contact with LYS 851 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
847B LYS* 3.2 33.2 + - + +
848B GLU* 3.8 5.2 - - - +
849B GLN 3.0 0.4 - - - -
850B LEU* 1.3 76.2 - - - +
852B GLN* 1.3 56.5 + - - +
853B MET 2.8 5.2 - - - -
854B ASP* 2.7 38.5 + - + +
855B LYS* 3.0 24.6 + - + +
858B GLU* 5.5 4.8 + - - -
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Residues in contact with GLN 852 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853A MET* 4.1 15.1 - - - +
857A LYS* 5.7 3.3 + - - -
848B GLU* 3.0 29.0 + - - +
849B GLN* 3.5 31.4 - - - +
851B LYS* 1.3 76.3 - - - +
853B MET* 1.3 61.4 + - - +
855B LYS* 3.7 7.9 + - - +
856B MET* 3.2 26.0 + - - +
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Residues in contact with MET 853 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849A GLN* 3.0 46.9 - - + +
852A GLN* 3.7 17.3 - - + +
853A MET* 3.3 34.1 - - + +
856A MET* 3.8 23.1 - - - +
849B GLN 2.7 16.7 + - - +
850B LEU* 3.5 15.9 - - + +
852B GLN* 1.3 76.7 - - - +
854B ASP* 1.3 61.2 + - - +
856B MET* 3.3 6.9 + - - +
857B LYS* 2.9 38.8 + - - +
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Residues in contact with ASP 854 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
850B LEU* 3.2 16.3 - - - +
851B LYS* 2.7 34.1 + - + +
853B MET* 1.3 74.3 - - - +
855B LYS* 1.3 64.2 - - - +
857B LYS* 3.1 27.3 + - - +
858B GLU* 3.2 15.5 + - - +
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Residues in contact with LYS 855 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
851B LYS* 3.0 25.2 + - - +
852B GLN* 4.0 8.1 - - - +
854B ASP* 1.3 76.5 - - - +
856B MET* 1.3 57.2 + - - +
858B GLU* 3.2 31.0 + - + +
859B ASP* 2.9 56.8 + - - +
862B LYS* 6.3 0.6 - - - +
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Residues in contact with MET 856 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853A MET* 3.0 44.6 - - + +
856A MET* 3.2 22.2 - - + +
857A LYS* 3.1 39.0 - - + +
860A LEU* 4.1 20.8 - - + +
852B GLN* 3.2 15.6 + - - +
853B MET* 3.4 10.3 - - - +
854B ASP 3.1 0.4 - - - -
855B LYS* 1.3 79.1 - - - +
857B LYS* 1.3 66.2 + - - +
859B ASP* 3.9 5.5 - - - +
860B LEU* 3.1 24.4 + - - +
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Residues in contact with LYS 857 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
852A GLN* 3.7 26.8 - - - +
856A MET* 3.7 24.9 - - + -
853B MET* 2.9 26.7 + - - +
854B ASP* 3.1 21.3 + - - +
856B MET* 1.3 77.8 - - - +
858B GLU* 1.3 60.7 + - - +
860B LEU* 3.8 6.2 - - - +
861B ALA* 3.3 20.8 + - - +
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Residues in contact with GLU 858 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
851B LYS* 5.5 4.0 + - - -
854B ASP 3.2 7.7 + - - +
855B LYS* 3.2 45.9 + - + +
856B MET 3.1 0.4 - - - -
857B LYS* 1.3 79.1 - - - +
859B ASP* 1.3 65.9 + - - +
860B LEU 3.0 1.6 - - - -
861B ALA* 3.8 5.4 - - - +
862B LYS* 3.0 26.9 + - - +
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Residues in contact with ASP 859 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860A LEU* 3.8 21.0 - - + +
864A GLU* 5.8 0.6 - - - +
855B LYS* 2.9 54.7 + - - +
856B MET* 3.3 7.0 + - - +
858B GLU* 1.3 77.3 - - - +
860B LEU* 1.3 54.1 + - - +
862B LYS* 3.8 13.2 - - - +
863B THR* 2.4 38.7 + - - +
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Residues in contact with LEU 860 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
856A MET* 4.3 23.3 - - + -
859A ASP* 3.9 15.0 - - + -
860A LEU* 3.5 40.1 - - + +
863A THR* 3.8 17.7 - - + +
856B MET 3.1 16.5 + - - +
857B LYS* 3.8 6.1 - - - +
858B GLU 3.0 0.4 - - - -
859B ASP* 1.3 76.9 - - - +
861B ALA* 1.3 61.6 + - - +
863B THR* 3.5 1.0 + - - -
864B GLU* 2.9 34.4 + - + +
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Residues in contact with ALA 861 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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857B LYS 3.3 13.2 + - - +
858B GLU* 3.3 7.9 + - - +
860B LEU* 1.3 81.0 - - - +
862B LYS* 1.3 57.2 + - - +
864B GLU* 3.6 6.5 + - - +
865B ARG* 3.0 28.6 + - - +
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Residues in contact with LYS 862 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
855B LYS* 6.3 0.2 - - - +
858B GLU 3.0 17.1 + - - +
859B ASP* 3.8 14.4 - - - +
861B ALA* 1.3 74.0 - - - +
863B THR* 1.3 60.7 + - - +
865B ARG* 3.0 31.9 + - - +
866B ILE* 2.8 51.4 + - + +
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Residues in contact with THR 863 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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860A LEU* 3.9 9.1 - - + +
863A THR* 3.3 32.1 - - + +
864A GLU* 3.9 22.7 + - + +
867A LYS* 4.0 18.5 - - + +
859B ASP* 2.4 23.8 + - - +
860B LEU 3.8 2.5 - - - -
862B LYS* 1.3 81.7 - - - +
864B GLU* 1.3 57.4 + - - +
866B ILE* 3.7 7.1 - - - +
867B LYS* 2.8 30.3 + - - +
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Residues in contact with GLU 864 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
863A THR* 3.7 18.9 + - + +
860B LEU* 2.9 23.8 + - + +
861B ALA* 3.8 7.6 - - - +
863B THR* 1.3 75.5 - - - +
865B ARG* 1.3 63.6 + - - +
867B LYS* 2.6 42.2 + - - +
868B LYS* 3.0 57.0 + - - +
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Residues in contact with ARG 865 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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861B ALA 3.0 14.1 + - - +
862B LYS* 3.0 38.1 + - - +
864B GLU* 1.3 78.3 - - - +
866B ILE* 1.3 71.6 + - - +
868B LYS* 3.5 7.1 + - - +
869B GLU* 3.1 51.2 + - - +
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Residues in contact with ILE 866 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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867A LYS* 3.6 35.0 - - + -
871A GLU* 5.3 0.7 - - - +
862B LYS* 2.8 45.5 + - + +
863B THR* 3.8 4.9 - - - +
865B ARG* 1.3 88.5 - - - +
867B LYS* 1.3 67.0 + - - +
869B GLU* 3.1 14.2 + - + +
870B LEU* 3.0 34.6 + - + +
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Residues in contact with LYS 867 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
863A THR* 4.2 15.7 + - + +
866A ILE* 3.7 35.2 - - + +
867A LYS* 4.5 10.1 - - + +
870A LEU* 3.5 21.7 - - + +
863B THR 2.8 17.5 + - - +
864B GLU* 2.6 35.9 + - - +
865B ARG 3.3 0.2 - - - -
866B ILE* 1.3 76.7 - - - +
868B LYS* 1.3 59.2 + - - +
870B LEU* 3.1 9.7 + - - +
871B GLU* 2.9 51.0 + - + +
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Residues in contact with LYS 868 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
864B GLU* 3.0 39.8 + - - +
865B ARG* 3.9 6.5 - - - +
867B LYS* 1.3 77.9 - - - +
869B GLU* 1.3 62.7 + - - +
871B GLU* 3.1 23.1 - - - +
872B GLU* 3.1 22.3 + - - +
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Residues in contact with GLU 869 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865B ARG* 3.1 46.6 + - - +
866B ILE* 3.1 17.6 + - + +
868B LYS* 1.3 76.7 - - - +
870B LEU* 1.3 59.3 + - + +
872B GLU* 3.1 9.1 - - - +
873B GLN* 2.8 43.7 + - + +
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Residues in contact with LEU 870 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
867A LYS* 3.9 14.6 - - + +
870A LEU* 3.9 15.3 - - + -
871A GLU* 3.8 32.1 - - + +
874A ASN* 4.5 22.0 - - + +
866B ILE* 3.0 32.1 + - + +
867B LYS* 3.4 8.3 - - - +
869B GLU* 1.3 75.3 - - + +
871B GLU* 1.3 66.6 + - - +
873B GLN* 3.8 18.6 - - - +
874B ASN* 2.7 31.7 + - - +
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Residues in contact with GLU 871 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
866A ILE* 5.8 1.4 - - - +
870A LEU* 3.7 24.7 - - + +
867B LYS* 2.9 33.6 + - - +
868B LYS* 3.1 31.6 - - - +
869B GLU 3.3 0.2 - - - -
870B LEU* 1.3 75.0 - - - +
872B GLU* 1.3 57.5 + - - +
874B ASN* 3.3 3.4 + - - +
875B VAL* 2.9 35.8 + - + +
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Residues in contact with GLU 872 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
868B LYS 3.1 10.4 + - - +
869B GLU* 3.1 12.1 - - - +
870B LEU 3.1 0.2 - - - -
871B GLU* 1.3 76.8 - - - +
873B GLN* 1.3 68.6 + - + +
875B VAL* 3.0 23.8 + - - +
876B THR* 3.1 20.4 + - - +
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Residues in contact with GLN 873 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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874A ASN* 4.1 14.9 + - - +
869B GLU* 2.8 31.7 + - + +
870B LEU* 3.8 19.2 - - - +
872B GLU* 1.3 73.5 - - + +
874B ASN* 1.3 58.6 + - - +
876B THR* 2.9 10.5 + - - -
877B LEU* 2.8 34.7 + - + +
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Residues in contact with ASN 874 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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870A LEU* 3.2 32.9 + - - +
873A GLN* 2.9 31.6 + - - +
874A ASN* 2.6 42.2 + - - +
877A LEU* 3.7 15.4 - - + +
870B LEU* 2.7 23.3 + - - +
871B GLU* 3.6 5.8 - - - +
873B GLN* 1.3 73.7 - - - +
875B VAL* 1.3 57.4 + - + +
877B LEU* 3.4 2.7 + - - +
878B LEU* 2.9 30.7 + - + +
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Residues in contact with VAL 875 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
871B GLU* 2.9 21.1 + - + +
872B GLU* 3.0 17.5 + - - +
874B ASN* 1.3 74.4 - - - +
876B THR* 1.3 62.8 + - - +
878B LEU* 3.4 12.0 + - + +
879B GLU* 2.8 51.5 + - + +
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Residues in contact with THR 876 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
872B GLU* 3.1 20.1 + - - +
873B GLN* 2.9 12.8 + - - -
875B VAL* 1.3 76.7 - - - +
877B LEU* 1.3 68.0 + - + +
879B GLU* 3.0 13.8 + - - +
880B GLN* 2.9 51.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 877 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
874A ASN* 3.4 37.2 - - - +
877A LEU* 4.0 26.2 - - + -
878A LEU* 3.8 26.0 - - + -
881A LYS* 4.0 16.1 - - + +
873B GLN* 2.8 19.3 + - + +
874B ASN* 3.9 7.9 - - - +
876B THR* 1.3 78.0 - - + +
878B LEU* 1.3 52.2 + - - +
880B GLN* 3.3 20.4 + - - +
881B LYS* 2.7 37.0 + - - +
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Residues in contact with LEU 878 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
873A GLN* 5.1 13.7 - - - +
877A LEU* 4.5 17.9 - - + +
874B ASN 2.9 19.7 + - - +
875B VAL* 3.5 14.4 - - + +
876B THR 3.1 0.2 - - - -
877B LEU* 1.3 77.6 - - - +
879B GLU* 1.3 57.0 + - + +
881B LYS* 3.3 11.0 + - - +
882B ASN* 3.0 53.9 + - - +
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Residues in contact with GLU 879 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
875B VAL* 2.8 39.7 - - + +
876B THR* 3.0 12.0 + - - +
878B LEU* 1.3 77.2 - - + +
880B GLN* 1.3 64.4 + - + +
882B ASN* 3.1 9.2 + - - +
883B ASP* 3.0 29.4 + - - +
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Residues in contact with GLN 880 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
881A LYS* 3.0 32.9 + - + +
876B THR* 2.9 33.6 + - + +
877B LEU* 3.7 19.0 - - - +
879B GLU* 1.3 77.0 - - + +
881B LYS* 1.3 62.4 + - - +
883B ASP* 3.6 6.1 + - - +
884B LEU* 3.1 32.3 + - + +
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Residues in contact with LYS 881 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877A LEU* 3.9 15.1 - - + +
880A GLN* 3.1 42.3 + - + +
881A LYS* 4.1 19.7 - - + +
884A LEU* 3.6 20.2 - - + +
877B LEU 2.7 22.0 + - - +
878B LEU* 3.6 12.0 - - - +
880B GLN* 1.3 74.9 - - - +
882B ASN* 1.3 70.7 + - - +
884B LEU* 3.5 4.7 + - - +
885B PHE* 3.0 31.3 + - - +
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Residues in contact with ASN 882 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
878B LEU* 3.0 33.2 + - - +
879B GLU* 3.1 9.6 + - - +
881B LYS* 1.3 87.3 - - - +
883B ASP* 1.3 63.7 + - - +
885B PHE* 3.0 8.8 + - - +
886B GLY* 2.8 26.5 + - - -
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Residues in contact with ASP 883 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
879B GLU* 3.0 17.9 + - - +
880B GLN* 4.0 6.8 - - - +
882B ASN* 1.3 78.6 - - - +
884B LEU* 1.3 63.5 + - + +
886B GLY* 3.1 3.1 + - - -
887B SER* 3.1 24.5 + - - -
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Residues in contact with LEU 884 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
881A LYS* 4.0 36.6 - - + +
884A LEU* 4.3 14.4 - - + -
885A PHE* 3.6 45.1 - - + -
888A MET* 3.8 16.1 - - + +
880B GLN* 3.1 22.7 + - + +
881B LYS* 3.8 4.7 - - - +
883B ASP* 1.3 77.9 - - + +
885B PHE* 1.3 64.0 + - - +
887B SER* 3.1 8.7 + - - +
888B MET* 3.0 23.0 + - - +
----------------------------------------------------------
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Residues in contact with PHE 885 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
884A LEU* 3.7 24.8 - - + +
881B LYS* 3.0 18.8 + - - +
882B ASN* 3.3 13.7 - - - +
884B LEU* 1.3 77.2 - - - +
886B GLY* 1.3 63.5 + - - +
888B MET* 3.4 20.5 + - + +
889B LYS* 3.0 60.6 + - + +
----------------------------------------------------------
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Residues in contact with GLY 886 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
882B ASN 2.8 13.4 + - - -
883B ASP* 3.1 4.9 + - - -
884B LEU 3.1 0.2 - - - -
885B PHE* 1.3 77.1 - - - +
887B SER* 1.3 65.9 + - - +
889B LYS* 3.1 9.8 + - - +
890B GLN* 3.0 29.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 887 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
888A MET* 3.6 22.9 - - - +
883B ASP 3.1 12.9 + - - -
884B LEU* 3.1 11.4 + - - +
886B GLY* 1.3 74.3 - - - +
888B MET* 1.3 58.1 + - - +
890B GLN* 3.0 18.9 + - - +
891B LEU* 2.8 32.4 + - - +
----------------------------------------------------------
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Residues in contact with MET 888 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
884A LEU* 3.8 19.3 - - + +
887A SER* 4.0 21.3 - - - -
888A MET* 4.0 17.9 - - + +
891A LEU* 3.4 21.3 - - + -
884B LEU 3.0 12.7 + - - +
885B PHE* 3.5 30.1 - - + +
887B SER* 1.3 77.3 - - - +
889B LYS* 1.3 85.4 + - - +
891B LEU* 3.0 8.4 + - - +
892B GLU* 2.8 40.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 889 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
885B PHE* 3.0 54.0 + - + +
886B GLY* 3.4 8.5 - - - +
888B MET* 1.3 99.2 - - - +
890B GLN* 1.3 59.0 + - + +
892B GLU* 2.9 39.6 + - - +
893B ASP* 2.8 33.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 890 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
886B GLY 3.0 19.6 + - - +
887B SER* 3.3 17.9 + - - +
889B LYS* 1.3 75.6 - - + +
891B LEU* 1.3 64.5 + - - +
893B ASP* 2.9 16.3 + - - +
894B LYS* 2.9 22.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 891 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
888A MET* 3.6 53.4 - - + +
891A LEU* 3.8 17.0 - - + -
892A GLU* 3.8 21.5 - - + +
895A VAL* 4.3 17.9 - - + +
887B SER* 2.8 14.2 + - - +
888B MET* 3.2 8.5 - - - +
890B GLN* 1.3 75.1 - - - +
892B GLU* 1.3 58.2 + - - +
894B LYS* 3.0 10.5 + - + +
895B VAL* 2.9 31.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 892 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891A LEU* 4.1 20.7 - - + +
888B MET* 2.8 25.5 + - - +
889B LYS* 2.9 46.4 + - - +
891B LEU* 1.3 78.0 - - - +
893B ASP* 1.3 60.6 + - - +
895B VAL* 3.0 11.0 + - - +
896B GLU* 3.0 24.1 + - - +
----------------------------------------------------------
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Residues in contact with ASP 893 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
889B LYS* 2.8 26.9 + - - +
890B GLN* 2.9 19.0 + - - +
892B GLU* 1.3 71.6 - - - +
894B LYS* 1.3 64.2 + - - +
896B GLU* 3.4 5.7 + - - +
897B GLU* 3.1 23.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 894 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
895A VAL* 4.2 26.5 - - + -
899A LEU* 5.3 6.5 - - - -
890B GLN 2.9 11.2 + - - +
891B LEU* 3.3 13.0 - - + +
893B ASP* 1.3 78.4 - - - +
895B VAL* 1.3 61.8 + - - +
897B GLU* 2.9 29.9 + - - +
898B LEU* 3.1 42.1 + - + +
901B LYS* 5.0 4.2 - - - +
----------------------------------------------------------
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Residues in contact with VAL 895 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891A LEU* 4.0 24.5 - - + +
894A LYS* 4.3 20.9 - - + -
895A VAL* 3.8 19.1 - - + -
898A LEU* 3.6 16.8 - - + +
891B LEU 2.9 18.9 + - - +
892B GLU* 3.0 9.4 + - - +
894B LYS* 1.3 77.9 - - - +
896B GLU* 1.3 62.6 + - - +
898B LEU* 3.3 0.6 + - - -
899B LEU* 3.0 41.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU 896 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
892B GLU 3.0 13.9 + - - +
893B ASP* 3.8 6.3 - - - +
895B VAL* 1.3 77.2 - - - +
897B GLU* 1.3 65.2 + - - +
899B LEU* 3.2 16.1 + - - +
900B SER* 2.9 34.3 + - - -
----------------------------------------------------------
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Residues in contact with GLU 897 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
893B ASP 3.1 15.9 + - - +
894B LYS* 2.9 38.4 + - - +
896B GLU* 1.3 79.2 - - - +
898B LEU* 1.3 61.1 + - - +
900B SER* 3.3 7.5 + - - -
901B LYS* 2.9 56.6 + - + +
----------------------------------------------------------
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Residues in contact with LEU 898 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
895A VAL* 3.8 28.3 - - + +
898A LEU* 3.7 34.5 - - + +
899A LEU* 3.8 24.0 - - + -
902A ASN* 5.2 6.7 - - + -
894B LYS* 3.1 45.8 + - + +
895B VAL 3.7 3.6 - - - +
897B GLU* 1.3 84.0 - - + +
899B LEU* 1.3 58.5 + - - +
901B LYS* 4.5 11.4 - - + +
902B ASN* 2.8 42.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 899 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894A LYS* 4.9 8.1 - - - +
898A LEU* 3.3 32.8 - - + -
895B VAL* 3.0 35.7 + - + +
896B GLU* 3.5 18.6 - - - +
898B LEU* 1.3 75.3 - - - +
900B SER* 1.3 57.6 + - - +
902B ASN* 3.7 5.5 + - + +
903B TYR* 3.0 27.0 + - - +
----------------------------------------------------------
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Residues in contact with SER 900 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896B GLU* 2.9 26.9 + - - -
897B GLU* 3.5 8.5 - - - -
899B LEU* 1.3 77.7 - - - +
901B LYS* 1.3 64.4 + - - +
903B TYR* 3.4 8.4 + - - +
904B HIS* 3.2 21.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 901 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
902A ASN* 4.1 19.7 - - - +
894B LYS* 5.0 4.8 - - - +
897B GLU* 2.9 53.4 + - + +
898B LEU* 3.8 11.5 - - + +
900B SER* 1.3 73.7 - - - +
902B ASN* 1.3 62.1 + - - +
904B HIS* 3.2 7.9 + - - +
905B LEU* 2.8 36.9 + - + +
----------------------------------------------------------
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Residues in contact with ASN 902 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
898A LEU* 3.3 28.2 - - - +
901A LYS* 3.9 8.1 - - + +
902A ASN* 3.0 45.2 + - - +
905A LEU* 4.0 11.4 - - + +
898B LEU 2.8 25.8 + - - +
899B LEU* 3.9 6.5 - - + +
901B LYS* 1.3 74.9 - - - +
903B TYR* 1.3 60.2 + - - +
905B LEU* 3.2 7.7 + - - +
906B GLU* 2.7 39.9 + - - +
----------------------------------------------------------
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Residues in contact with TYR 903 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
899B LEU 3.0 19.6 + - - +
900B SER* 3.6 8.3 - - - +
901B LYS 3.2 0.2 - - - -
902B ASN* 1.3 77.4 - - - +
904B HIS* 1.3 64.2 + - - +
906B GLU* 3.1 16.6 + - + +
907B ASN* 3.0 58.2 + - - -
----------------------------------------------------------
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Residues in contact with HIS 904 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
900B SER 3.2 9.1 + - - +
901B LYS* 3.2 9.5 + - - +
903B TYR* 1.3 80.1 - - + +
905B LEU* 1.3 79.8 + - + +
907B ASN* 3.1 14.7 + - + +
908B GLU* 3.0 50.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 905 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
902A ASN* 3.5 25.1 - - - +
905A LEU* 3.9 26.9 - - + -
906A GLU* 3.8 34.8 - - + +
909A VAL* 3.8 14.3 - - + +
901B LYS* 2.8 21.4 + - + +
902B ASN* 3.6 7.2 - - - +
904B HIS* 1.3 96.6 - - + +
906B GLU* 1.3 61.1 - - - +
908B GLU* 3.1 8.3 + - + +
909B VAL* 3.0 24.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 906 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905A LEU* 3.7 28.1 - - + +
902B ASN* 2.7 27.0 + - - +
903B TYR* 3.6 17.0 - - + +
905B LEU* 1.3 72.7 - - - +
907B ASN* 1.3 65.9 + - - +
909B VAL* 3.4 5.4 + - - +
910B ALA* 3.0 22.7 + - - +
867C LYS* 5.8 1.7 + - - -
871C GLU* 5.7 0.7 - - - +
866D ILE* 6.0 1.9 - - - +
----------------------------------------------------------
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Residues in contact with ASN 907 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
903B TYR* 3.0 56.4 + - - +
904B HIS* 3.1 10.9 + - + +
906B GLU* 1.3 76.2 - - - +
908B GLU* 1.3 62.0 + - - +
910B ALA* 3.2 8.4 + - - +
911B ARG* 2.8 30.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 908 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
909A VAL* 3.9 18.4 - - + -
913A LYS* 4.4 10.6 - - - -
904B HIS* 3.0 43.2 + - + +
905B LEU* 3.3 11.2 - - + +
907B ASN* 1.3 74.8 - - - +
909B VAL* 1.3 55.7 + - - +
911B ARG* 2.9 47.8 + - - +
912B LEU* 2.7 46.1 + - + +
----------------------------------------------------------
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Residues in contact with VAL 909 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905A LEU* 4.0 19.7 - - + -
908A GLU* 3.8 24.5 - - + +
909A VAL* 3.9 16.4 - - + +
912A LEU* 4.0 12.3 - - + +
905B LEU 3.0 16.7 + - - +
906B GLU* 3.7 8.5 - - - +
908B GLU* 1.3 74.3 - - - +
910B ALA* 1.3 55.5 + - - +
912B LEU* 3.8 1.8 - - - +
913B LYS* 2.7 65.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA 910 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
906B GLU 3.0 14.8 + - - +
907B ASN* 3.4 12.8 - - - +
908B GLU 3.1 0.2 - - - -
909B VAL* 1.3 79.6 - - - +
911B ARG* 1.3 62.6 + - - +
913B LYS* 3.7 7.4 - - - +
914B LYS* 3.0 23.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 911 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913A LYS* 4.6 0.2 - - - +
918A GLU* 2.8 41.6 + - - -
907B ASN 2.8 17.0 + - - +
908B GLU* 2.9 44.8 + - - +
910B ALA* 1.3 72.9 - - - +
912B LEU* 1.3 77.1 + - - +
914B LYS* 3.1 18.9 + - - +
915B LEU* 2.9 41.6 + - + +
----------------------------------------------------------
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Residues in contact with LEU 912 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
909A VAL* 4.6 11.2 - - + +
912A LEU* 3.9 42.4 - - + +
913A LYS* 4.7 7.0 - - + +
916A VAL* 4.3 5.7 - - + +
918A GLU* 3.3 32.5 - - + +
908B GLU* 2.7 48.6 + - + +
909B VAL* 3.8 2.9 - - - +
911B ARG* 1.3 95.8 - - - +
913B LYS* 1.3 63.7 + - - +
915B LEU* 3.1 10.3 + - + +
916B VAL* 3.0 26.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 913 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
908A GLU* 3.6 21.2 + - - -
912A LEU* 3.9 9.7 - - + +
909B VAL* 2.7 38.7 + - + +
910B ALA* 3.7 6.3 - - - +
912B LEU* 1.3 72.3 - - - +
914B LYS* 1.3 63.2 + - - +
916B VAL* 3.1 18.4 + - - +
917B GLY* 3.1 10.4 + - - -
874C ASN* 3.3 30.7 - - - +
875C VAL* 3.8 12.7 - - - +
878C LEU* 4.4 14.7 - - + +
870D LEU* 6.1 2.2 - - - -
873D GLN* 5.3 5.2 - - - -
----------------------------------------------------------
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Residues in contact with LYS 914 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
910B ALA 3.0 13.8 + - - +
911B ARG* 3.4 19.1 - - - +
913B LYS* 1.3 76.2 - - - +
915B LEU* 1.3 65.5 + - - +
917B GLY* 3.2 11.5 + - - -
918B GLU* 2.8 58.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 915 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
916A VAL* 3.4 27.5 - - + +
918A GLU* 3.9 10.3 - - + +
911B ARG* 2.9 38.8 + - + +
912B LEU* 3.4 12.6 - - + +
914B LYS* 1.3 80.2 - - - +
916B VAL* 1.3 60.3 + - - +
918B GLU* 3.4 26.8 + - + +
----------------------------------------------------------
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Residues in contact with VAL 916 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912A LEU* 4.8 5.2 - - + -
915A LEU* 3.9 26.2 - - + -
916A VAL* 3.1 31.4 - - + -
912B LEU 3.0 14.5 + - - +
913B LYS* 3.1 10.1 + - - +
915B LEU* 1.3 77.4 - - - +
917B GLY* 1.3 62.5 + - - +
918B GLU 3.2 4.6 + - - -
878C LEU* 4.6 23.1 - - + +
882C ASN* 5.6 7.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 917 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913B LYS 3.1 12.3 + - - -
914B LYS* 3.2 6.2 + - - -
916B VAL* 1.3 78.7 - - - +
918B GLU* 1.3 59.4 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il