Contacts of the helix formed by residues 845 - 917 (chain C) in PDB entry 1NKN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 845 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846C MET* 1.3 65.7 + - - +
847C LYS* 3.7 3.4 - - - +
848C GLU* 4.0 21.3 - - - +
849C GLN* 3.7 16.5 + - - +
846D MET* 4.0 17.7 - - + +
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Residues in contact with MET 846 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
845C GLU* 1.3 78.3 - - - +
847C LYS* 1.3 68.8 + - + +
849C GLN* 3.0 19.7 + - - +
850C LEU* 3.3 11.5 + - + +
843D GLU 4.7 9.0 - - - +
846D MET* 3.5 33.4 - - + +
849D GLN* 3.5 24.2 - - - +
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Residues in contact with LYS 847 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
845C GLU 4.6 1.9 - - - +
846C MET* 1.3 77.7 - - + +
848C GLU* 1.3 66.5 + - - +
849C GLN 3.0 0.3 + - - -
850C LEU* 3.1 10.4 + - - +
851C LYS* 2.9 25.7 + - - +
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Residues in contact with GLU 848 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
845C GLU* 4.0 26.7 - - - +
847C LYS* 1.3 78.1 - - - +
849C GLN* 1.3 52.4 + - - +
851C LYS* 3.6 8.0 - - - +
852C GLN* 2.8 71.3 + - + +
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Residues in contact with GLN 849 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
845C GLU 3.7 10.4 + - - +
846C MET* 3.0 11.9 + - - +
847C LYS 3.0 0.4 - - - -
848C GLU* 1.3 75.7 - - - +
850C LEU* 1.3 67.0 + - - +
851C LYS 3.0 1.6 - - - -
852C GLN* 3.1 7.5 + - - +
853C MET* 2.8 59.6 + - + +
846D MET* 3.6 27.8 - - - +
849D GLN* 4.1 8.7 + - + +
850D LEU* 3.1 33.0 - - - +
853D MET* 3.9 14.1 - - - +
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Residues in contact with LEU 850 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846C MET* 3.3 12.5 + - + +
847C LYS* 3.1 11.4 + - - +
849C GLN* 1.3 78.6 - - - +
851C LYS* 1.3 60.3 + - - +
853C MET* 3.1 23.9 - - + +
854C ASP* 3.2 21.1 - - - +
849D GLN* 3.2 26.9 - - - +
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Residues in contact with LYS 851 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
847C LYS 2.9 17.1 + - - +
848C GLU* 3.6 11.0 - - - +
850C LEU* 1.3 74.4 - - - +
852C GLN* 1.3 66.1 + - - +
853C MET 3.0 1.6 - - - -
854C ASP* 3.0 12.7 + - + +
855C LYS* 2.9 23.2 + - + +
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Residues in contact with GLN 852 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
848C GLU* 2.8 46.4 + - + +
849C GLN* 3.5 11.4 - - - +
851C LYS* 1.3 73.9 - - - +
853C MET* 1.3 59.2 + - - +
855C LYS* 2.8 66.9 + - - +
856C MET* 3.3 4.5 + - - +
853D MET* 3.9 14.4 - - + +
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Residues in contact with MET 853 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849C GLN* 2.8 31.4 + - + +
850C LEU* 3.1 19.1 - - + +
852C GLN* 1.3 78.8 - - - +
854C ASP* 1.3 64.4 + - - +
857C LYS* 2.9 24.0 + - + +
849D GLN* 2.9 61.5 - - + +
852D GLN* 4.9 10.1 - - - +
853D MET* 3.9 19.7 - - - -
856D MET* 3.2 23.2 - - + +
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Residues in contact with ASP 854 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
850C LEU* 3.2 18.4 - - - +
851C LYS* 3.0 15.4 + - + +
853C MET* 1.3 80.5 - - - +
855C LYS* 1.3 67.0 + - - +
856C MET 3.0 2.2 - - - -
857C LYS* 3.6 10.8 - - + +
858C GLU* 2.9 36.8 + - + +
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Residues in contact with LYS 855 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
851C LYS* 2.9 12.6 + - + +
852C GLN* 2.8 58.5 + - - +
854C ASP* 1.3 78.7 - - - +
856C MET* 1.3 80.9 + - - +
858C GLU* 3.6 4.7 + - - +
859C ASP* 2.6 36.1 + - - +
853D MET* 4.1 6.9 - - - +
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Residues in contact with MET 856 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
852C GLN 3.3 10.0 + - - +
854C ASP 3.0 0.2 - - - -
855C LYS* 1.3 98.3 - - - +
857C LYS* 1.3 67.1 + - - +
858C GLU 2.9 2.0 + - - -
859C ASP* 3.0 6.3 + - + +
860C LEU* 2.9 24.1 + - + +
853D MET* 3.6 12.3 - - - +
856D MET* 3.7 24.0 - - + +
857D LYS* 3.3 45.8 - - + -
860D LEU* 3.7 29.4 - - + -
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Residues in contact with LYS 857 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
893A ASP* 6.2 2.0 - - - +
853C MET* 2.9 20.7 + - + +
854C ASP* 3.1 15.2 + - + +
856C MET* 1.3 75.2 - - - +
858C GLU* 1.3 67.7 + - - +
860C LEU* 3.6 24.4 - - - +
861C ALA* 3.3 22.4 + - - +
856D MET* 3.6 20.8 - - - +
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Residues in contact with GLU 858 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
854C ASP* 2.9 26.2 + - + +
855C LYS* 3.8 5.8 - - - +
856C MET 2.9 0.8 - - - -
857C LYS* 1.3 86.8 - - - +
859C ASP* 1.3 57.4 + - - +
860C LEU 3.0 1.8 - - - -
861C ALA* 3.8 9.6 - - - +
862C LYS* 2.7 38.1 + - - +
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Residues in contact with ASP 859 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
855C LYS* 2.6 25.7 + - - +
856C MET* 3.0 10.9 + - + +
858C GLU* 1.3 77.7 - - - +
860C LEU* 1.3 56.1 + - - +
862C LYS* 3.9 7.6 - - - +
863C THR* 2.7 37.9 + - - +
860D LEU* 4.2 16.6 - - + +
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Residues in contact with LEU 860 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
897A GLU* 6.1 0.4 - - - +
856C MET* 2.9 16.6 + - + +
857C LYS* 3.6 23.6 - - - +
859C ASP* 1.3 77.1 - - - +
861C ALA* 1.3 60.1 + - - +
863C THR* 4.0 1.2 - - - -
864C GLU* 3.0 32.2 + - + +
856D MET* 3.5 31.9 - - + +
859D ASP* 3.9 19.3 - - + +
860D LEU* 3.6 43.9 - - + +
863D THR* 4.6 8.0 - - - +
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Residues in contact with ALA 861 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
857C LYS* 3.3 15.5 + - - +
858C GLU* 3.2 13.8 + - - +
860C LEU* 1.3 78.4 - - - +
862C LYS* 1.3 58.6 + - - +
864C GLU* 3.5 6.0 + - - +
865C ARG* 3.0 28.1 + - - +
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Residues in contact with LYS 862 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
858C GLU 2.7 22.8 + - - +
859C ASP* 3.9 6.5 - - - +
861C ALA* 1.3 70.9 - - - +
863C THR* 1.3 65.2 + - - +
865C ARG* 3.0 62.4 + - - +
866C ILE* 3.1 19.8 + - + +
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Residues in contact with THR 863 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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859C ASP* 2.7 25.1 + - - +
860C LEU 4.1 2.7 - - - -
862C LYS* 1.3 76.4 - - - +
864C GLU* 1.3 57.1 + - - +
865C ARG 3.2 0.2 + - - -
866C ILE* 3.3 11.0 + - - +
867C LYS* 2.9 26.2 + - - +
860D LEU* 4.0 11.4 - - + +
863D THR* 3.4 23.1 - - + -
864D GLU* 4.1 20.5 + - + +
867D LYS* 3.4 26.7 + - + +
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Residues in contact with GLU 864 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
897A GLU* 6.0 2.7 - - + -
901A LYS* 3.6 26.8 + - - -
860C LEU* 3.0 21.5 + - + +
861C ALA* 3.7 7.0 - - - +
862C LYS 3.3 0.2 - - - -
863C THR* 1.3 77.3 - - - +
865C ARG* 1.3 61.0 + - - +
867C LYS* 3.0 39.3 + - - +
868C LYS* 3.2 41.6 + - - +
863D THR* 3.7 20.8 + - + +
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Residues in contact with ARG 865 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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861C ALA 3.0 13.7 + - - +
862C LYS* 3.0 52.1 - - - +
863C THR 3.1 0.2 - - - -
864C GLU* 1.3 74.9 - - - +
866C ILE* 1.3 78.2 + - - +
868C LYS* 3.0 12.4 + - - +
869C GLU* 2.9 51.2 + - + +
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Residues in contact with ILE 866 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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862C LYS* 3.1 24.5 + - + +
863C THR* 3.7 8.1 - - - +
865C ARG* 1.3 98.7 - - - +
867C LYS* 1.3 57.2 + - - +
869C GLU* 3.2 14.8 + - + +
870C LEU* 2.9 48.3 + - + +
867D LYS* 4.0 25.6 - - - +
871D GLU* 4.9 2.0 - - - +
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Residues in contact with LYS 867 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
901A LYS* 4.7 12.9 - - - +
904A HIS* 4.9 2.4 - - - -
906B GLU* 5.8 1.8 + - - -
863C THR 2.9 13.5 + - - +
864C GLU* 3.0 39.9 + - - +
866C ILE* 1.3 76.2 - - - +
868C LYS* 1.3 68.1 + - - +
870C LEU* 3.4 2.9 + - - -
871C GLU* 3.0 65.0 + - - +
863D THR* 4.5 12.3 - - + +
866D ILE* 4.5 20.6 - - + -
867D LYS* 4.5 17.7 - - + +
870D LEU* 3.5 15.2 - - + +
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Residues in contact with LYS 868 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
897A GLU 4.9 0.2 + - - -
900A SER* 3.1 39.8 + - - -
901A LYS* 3.7 12.7 - - - +
904A HIS* 3.7 46.9 - - + +
864C GLU* 3.2 36.8 + - + +
865C ARG* 3.0 11.2 + - - +
867C LYS* 1.3 77.1 - - - +
869C GLU* 1.3 66.2 + - - +
871C GLU* 3.1 5.4 + - - +
872C GLU* 3.0 23.6 + - - +
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Residues in contact with GLU 869 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865C ARG* 2.9 47.6 + - + +
866C ILE* 3.2 19.9 + - + +
868C LYS* 1.3 78.0 - - + +
870C LEU* 1.3 58.3 + - + +
872C GLU* 3.4 7.9 - - - +
873C GLN* 3.0 25.8 + - - +
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Residues in contact with LEU 870 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
866C ILE* 2.9 37.3 + - + +
867C LYS* 3.7 4.7 - - - +
868C LYS 3.1 0.2 - - - -
869C GLU* 1.3 76.0 - - + +
871C GLU* 1.3 65.6 + - - +
872C GLU 3.0 1.8 - - - -
873C GLN* 3.8 13.7 - - + +
874C ASN* 2.8 25.8 + - - +
867D LYS* 3.9 18.8 - - + +
870D LEU* 4.0 9.9 - - + -
871D GLU* 3.5 35.2 - - + +
874D ASN* 3.3 26.1 + - + +
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Residues in contact with GLU 871 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
904A HIS* 2.6 43.3 + - - +
905A LEU* 5.6 2.3 - - - +
908A GLU* 3.8 20.7 - - - +
906B GLU* 5.7 0.7 - - - +
913B LYS* 5.3 0.2 + - - -
867C LYS* 3.0 43.9 + - - +
868C LYS* 3.6 1.6 - - - +
870C LEU* 1.3 76.1 - - - +
872C GLU* 1.3 61.6 + - - +
874C ASN* 3.3 8.1 - - - +
875C VAL* 3.2 29.0 + - - +
866D ILE* 5.2 3.5 - - - +
870D LEU* 3.3 23.0 - - + +
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Residues in contact with GLU 872 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
904A HIS* 3.0 33.4 + - - +
907A ASN* 5.1 10.3 - - - +
908A GLU* 4.8 9.7 - - - +
911A ARG* 2.9 45.7 + - - +
868C LYS 3.0 8.8 + - - +
869C GLU* 3.4 12.1 - - - +
870C LEU 3.0 0.2 - - - -
871C GLU* 1.3 76.0 - - - +
873C GLN* 1.3 66.0 + - - +
875C VAL* 3.2 2.7 + - - +
876C THR* 3.0 19.8 + - - +
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Residues in contact with GLN 873 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
869C GLU 3.0 15.6 + - - +
870C LEU* 3.2 14.8 + - + +
872C GLU* 1.3 74.5 - - - +
874C ASN* 1.3 53.7 + - - +
876C THR* 3.0 9.6 + - + -
877C LEU* 2.8 48.6 + - + +
874D ASN* 3.2 31.3 + - - +
878D LEU* 4.7 14.2 - - + +
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Residues in contact with ASN 874 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913B LYS* 3.3 32.9 - - - +
870C LEU 2.8 15.2 + - - +
871C GLU* 3.3 11.0 - - - +
873C GLN* 1.3 77.2 - - - +
875C VAL* 1.3 60.6 + - - +
877C LEU* 3.2 4.6 + - - +
878C LEU* 3.1 32.3 + - - +
870D LEU* 4.7 4.0 - - + +
873D GLN* 3.6 27.7 + - - +
874D ASN* 2.9 24.7 + - - +
877D LEU* 3.6 16.5 - - - +
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Residues in contact with VAL 875 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
908A GLU* 3.7 28.3 - - + +
911A ARG* 4.1 35.4 - - + +
912A LEU* 3.9 23.6 - - + +
915A LEU* 5.3 0.2 - - + -
913B LYS* 3.8 15.0 - - - +
871C GLU 3.2 15.7 - - - +
872C GLU* 3.2 6.6 + - - +
874C ASN* 1.3 73.4 - - - +
876C THR* 1.3 66.1 + - - +
878C LEU* 3.2 9.6 + - - +
879C GLU* 3.1 29.3 + - + +
----------------------------------------------------------
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Residues in contact with THR 876 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
911A ARG* 3.1 23.9 + - - +
872C GLU* 3.0 10.0 + - - +
873C GLN* 3.4 13.4 - - + +
875C VAL* 1.3 76.7 - - - +
877C LEU* 1.3 65.2 + - + +
879C GLU* 3.1 13.9 + - - +
880C GLN* 2.9 53.6 + - + +
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Residues in contact with LEU 877 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
873C GLN* 2.8 21.6 + - + +
874C ASN 3.4 7.0 - - - +
876C THR* 1.3 77.2 - - + +
878C LEU* 1.3 52.2 + - - +
880C GLN* 3.1 19.7 + - - +
881C LYS* 2.7 41.4 + - + +
874D ASN* 3.6 18.2 - - + +
877D LEU* 3.3 39.0 - - + +
878D LEU* 3.4 38.8 - - + +
881D LYS* 4.1 17.3 - - + -
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Residues in contact with LEU 878 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912A LEU* 4.1 24.5 - - + -
915A LEU* 4.0 15.2 - - + +
913B LYS* 4.4 14.6 - - + +
916B VAL* 4.6 21.7 - - + +
874C ASN* 3.1 29.5 + - - +
875C VAL* 3.4 9.6 - - - +
877C LEU* 1.3 80.2 - - - +
879C GLU* 1.3 55.4 + - - +
881C LYS* 3.5 10.0 + - + +
882C ASN* 3.0 28.6 + - - +
877D LEU* 4.3 22.7 - - + -
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Residues in contact with GLU 879 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
911A ARG* 2.8 56.5 + - - +
914A LYS* 6.1 0.3 - - - +
915A LEU* 4.1 27.8 - - + +
875C VAL* 3.1 15.1 + - + +
876C THR* 3.1 10.7 + - - +
878C LEU* 1.3 73.2 - - - +
880C GLN* 1.3 67.2 + - + +
882C ASN* 3.2 3.6 + - - +
883C ASP* 3.0 29.0 + - - +
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Residues in contact with GLN 880 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
876C THR* 2.9 37.9 + - + +
877C LEU* 3.5 16.9 - - - +
879C GLU* 1.3 74.3 - - + +
881C LYS* 1.3 65.6 + - - +
883C ASP* 3.0 10.8 + - - +
884C LEU* 3.0 27.7 + - + +
881D LYS* 3.4 34.2 - - + +
----------------------------------------------------------
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Residues in contact with LYS 881 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877C LEU* 2.7 23.8 + - + +
878C LEU* 3.8 11.0 - - + +
880C GLN* 1.3 71.8 - - - +
882C ASN* 1.3 65.1 + - - +
884C LEU* 3.1 8.1 + - - +
885C PHE* 2.9 49.4 + - + -
877D LEU* 4.3 20.0 - - + +
880D GLN* 2.6 44.8 + - + +
881D LYS* 4.3 17.9 - - + +
884D LEU* 4.2 19.6 - - + +
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Residues in contact with ASN 882 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
915A LEU* 3.7 30.2 + - + +
916B VAL* 5.6 7.2 - - + +
878C LEU 3.0 15.9 + - - +
879C GLU 3.3 9.9 - - - +
880C GLN 3.1 0.2 - - - -
881C LYS* 1.3 75.9 - - - +
883C ASP* 1.3 60.2 + - - +
885C PHE* 3.4 17.1 + - - +
886C GLY* 3.0 22.3 + - - -
----------------------------------------------------------
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Residues in contact with ASP 883 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
879C GLU* 3.0 20.8 + - - +
880C GLN* 3.0 10.0 + - - +
882C ASN* 1.3 80.4 - - - +
884C LEU* 1.3 58.4 + - + +
886C GLY* 2.7 21.6 + - - +
887C SER* 2.8 18.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 884 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
880C GLN* 3.0 17.7 + - + +
881C LYS* 3.5 7.0 - - - +
883C ASP* 1.3 75.6 - - + +
885C PHE* 1.3 57.5 + - - +
887C SER* 3.1 5.9 + - - +
888C MET* 2.8 37.1 + - - +
881D LYS* 3.4 44.0 - - + +
884D LEU* 3.6 25.6 - - + -
885D PHE* 3.4 34.1 - - + +
888D MET* 3.9 20.0 - - + -
----------------------------------------------------------
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Residues in contact with PHE 885 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
881C LYS* 2.9 49.7 + - + -
882C ASN* 3.5 16.2 - - - +
883C ASP 3.1 0.2 - - - -
884C LEU* 1.3 75.9 - - - +
886C GLY* 1.3 66.0 + - - +
888C MET* 3.5 9.2 + - + +
889C LYS* 3.3 20.4 + - - +
884D LEU* 3.8 32.8 - - + -
----------------------------------------------------------
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Residues in contact with GLY 886 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
882C ASN 3.0 10.9 + - - -
883C ASP* 2.7 11.0 + - - -
885C PHE* 1.3 80.9 - - - +
887C SER* 1.3 60.4 + - - -
889C LYS* 3.2 11.7 + - - +
890C GLN* 3.3 20.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 887 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
883C ASP* 2.8 16.1 + - - +
884C LEU* 3.1 8.2 + - - -
886C GLY* 1.3 72.4 - - - +
888C MET* 1.3 62.1 + - - +
890C GLN* 3.1 18.4 + - - +
891C LEU* 2.9 29.2 + - - +
888D MET* 3.8 25.3 - - - -
----------------------------------------------------------
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Residues in contact with MET 888 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
884C LEU 2.8 23.9 + - - +
885C PHE* 4.0 9.4 - - + +
887C SER* 1.3 72.2 - - - +
889C LYS* 1.3 58.5 + - - +
891C LEU* 3.2 3.1 + - - +
892C GLU* 2.7 48.0 + - - +
884D LEU* 3.6 44.2 - - + +
887D SER* 3.8 20.0 - - - -
888D MET* 4.1 16.2 - - + -
891D LEU* 4.1 23.6 - - + -
----------------------------------------------------------
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Residues in contact with LYS 889 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
885C PHE 3.3 10.0 + - - +
886C GLY* 3.2 10.4 + - - +
887C SER 3.2 0.6 - - - -
888C MET* 1.3 77.8 - - - +
890C GLN* 1.3 69.2 + - + +
892C GLU* 3.3 14.7 + - - +
893C ASP* 2.6 51.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 890 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
886C GLY 3.5 12.3 - - - +
887C SER* 3.1 19.1 + - - +
889C LYS* 1.3 83.3 - - + +
891C LEU* 1.3 63.7 + - + +
893C ASP* 3.5 6.1 + - - +
894C LYS* 3.0 22.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 891 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
887C SER* 2.9 17.2 + - - +
888C MET* 3.5 6.7 - - - +
890C GLN* 1.3 75.8 - - + +
892C GLU* 1.3 67.2 + - - +
894C LYS* 2.9 8.5 + - + +
895C VAL* 2.9 27.1 + - - +
888D MET* 3.4 44.9 - - + +
891D LEU* 3.7 24.2 - - + -
892D GLU* 3.7 18.2 - - + +
895D VAL* 4.2 19.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 892 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
888C MET* 2.7 40.1 + - - +
889C LYS* 3.6 18.3 - - + +
891C LEU* 1.3 70.2 - - - +
893C ASP* 1.3 67.9 + - - +
895C VAL* 3.1 11.3 + - - +
896C GLU* 3.0 27.6 + - + +
891D LEU* 4.0 20.8 - - + +
----------------------------------------------------------
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Residues in contact with ASP 893 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
889C LYS* 2.6 56.1 + - - +
890C GLN* 3.7 6.5 - - - +
892C GLU* 1.3 78.5 - - - +
894C LYS* 1.3 57.8 + - - +
896C GLU* 3.4 10.4 + - - +
897C GLU* 2.9 26.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 894 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
890C GLN 3.0 12.7 + - - +
891C LEU* 2.9 13.5 + - + +
893C ASP* 1.3 72.9 - - - +
895C VAL* 1.3 61.4 + - - +
897C GLU* 3.0 33.3 + - - +
898C LEU* 2.8 50.0 + - + +
901C LYS* 5.3 2.2 - - - +
895D VAL* 4.0 27.1 - - + -
899D LEU* 5.4 7.5 - - - +
----------------------------------------------------------
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Residues in contact with VAL 895 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891C LEU 2.9 16.2 + - - +
892C GLU* 3.1 9.4 + - - +
894C LYS* 1.3 77.9 - - - +
896C GLU* 1.3 74.5 + - - +
898C LEU* 3.4 2.4 + - - +
899C LEU* 3.0 34.9 + - + +
891D LEU* 4.2 15.0 - - + +
894D LYS* 4.0 25.8 - - + -
895D VAL* 3.6 20.6 - - + -
898D LEU* 3.9 15.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 896 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
892C GLU* 3.0 18.4 + - + +
893C ASP* 3.6 11.7 - - - +
895C VAL* 1.3 89.7 - - - +
897C GLU* 1.3 65.3 + - - +
899C LEU* 3.4 16.2 + - - +
900C SER* 3.2 22.9 + - - -
----------------------------------------------------------
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Residues in contact with GLU 897 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
893C ASP 2.9 14.2 + - - +
894C LYS* 3.0 40.6 + - - +
896C GLU* 1.3 78.2 - - - +
898C LEU* 1.3 59.1 + - - +
900C SER* 3.2 5.2 + - - -
901C LYS* 2.9 59.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 898 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894C LYS* 2.8 35.5 + - + +
895C VAL 3.7 4.0 - - - +
897C GLU* 1.3 76.9 - - - +
899C LEU* 1.3 59.9 + - - +
901C LYS* 3.3 12.4 + - + +
902C ASN* 2.8 36.7 + - - +
895D VAL* 3.7 32.5 - - + +
898D LEU* 3.6 32.8 - - + -
899D LEU* 4.1 24.7 - - + +
902D ASN* 4.5 18.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 899 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
895C VAL* 3.0 29.3 + - + +
896C GLU* 3.8 26.5 - - - +
897C GLU 3.4 0.2 - - - -
898C LEU* 1.3 75.4 - - - +
900C SER* 1.3 58.1 + - - +
902C ASN* 3.8 6.3 - - + +
903C TYR* 3.0 28.6 + - - +
894D LYS* 5.4 5.8 - - - -
898D LEU* 4.0 27.6 - - + -
901D LYS* 6.2 0.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 900 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896C GLU 3.2 10.7 + - - -
897C GLU* 3.5 9.4 - - - -
898C LEU 3.2 0.2 - - - -
899C LEU* 1.3 77.1 - - - +
901C LYS* 1.3 67.2 + - - +
903C TYR* 3.0 14.8 + - - +
904C HIS* 3.0 35.3 + - - -
----------------------------------------------------------
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Residues in contact with LYS 901 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894C LYS* 5.3 2.2 - - - +
897C GLU* 2.9 50.8 + - + +
898C LEU* 3.8 11.7 - - + +
900C SER* 1.3 75.7 + - - +
902C ASN* 1.3 58.3 + - - +
904C HIS* 3.4 6.5 + - - +
905C LEU* 3.0 34.2 + - + +
902D ASN* 4.0 18.6 - - - +
----------------------------------------------------------
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Residues in contact with ASN 902 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
898C LEU* 2.8 20.1 + - - +
899C LEU* 3.8 7.9 - - + +
901C LYS* 1.3 75.0 - - - +
903C TYR* 1.3 60.9 + - - +
905C LEU* 3.6 6.6 - - - +
906C GLU* 2.9 39.8 + - + +
898D LEU* 3.5 15.7 + - - +
901D LYS* 3.5 37.0 - - - +
902D ASN* 2.9 37.5 + - - +
905D LEU* 4.1 7.7 - - + +
----------------------------------------------------------
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Residues in contact with TYR 903 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
899C LEU 3.0 15.9 + - - +
900C SER* 3.0 8.9 + - - +
902C ASN* 1.3 77.2 - - - +
904C HIS* 1.3 100.7 + + - +
905C LEU 3.2 0.2 + - - -
906C GLU* 3.3 13.2 + - - +
907C ASN* 3.1 51.1 + - - -
----------------------------------------------------------
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Residues in contact with HIS 904 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
900C SER* 3.0 27.9 + - - +
901C LYS* 3.9 8.3 - - - +
903C TYR* 1.3 112.3 - + - +
905C LEU* 1.3 61.4 + - - +
907C ASN* 3.5 8.5 + - - +
908C GLU* 3.1 24.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 905 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
901C LYS* 3.0 19.5 + - + +
902C ASN* 3.6 6.3 - - - +
903C TYR 3.1 0.2 - - - -
904C HIS* 1.3 76.6 - - - +
906C GLU* 1.3 67.2 + - - +
908C GLU* 3.1 5.8 + - + +
909C VAL* 3.0 27.5 + - - +
902D ASN* 3.6 33.9 - - - +
905D LEU* 3.6 31.4 - - + -
906D GLU* 3.7 33.9 - - + +
909D VAL* 4.1 19.5 - - + +
----------------------------------------------------------
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Residues in contact with GLU 906 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
902C ASN* 2.9 30.7 + - - +
903C TYR* 3.7 12.1 - - - +
905C LEU* 1.3 74.6 - - - +
907C ASN* 1.3 66.9 + - - +
909C VAL* 3.2 12.4 + - - +
910C ALA* 3.1 21.7 + - - +
905D LEU* 3.8 21.0 - - + +
----------------------------------------------------------
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Residues in contact with ASN 907 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
903C TYR* 3.1 49.8 + - - +
904C HIS* 3.6 8.4 - - - +
905C LEU 3.1 0.8 - - - -
906C GLU* 1.3 80.5 - - - +
908C GLU* 1.3 58.0 + - - +
910C ALA* 3.1 9.5 + - - +
911C ARG* 3.0 26.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 908 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
904C HIS 3.1 16.0 + - - +
905C LEU* 3.1 8.2 + - + +
907C ASN* 1.3 73.6 - - - +
909C VAL* 1.3 60.3 + - - +
911C ARG* 3.7 32.9 + - + +
912C LEU* 3.0 38.1 + - - +
909D VAL* 3.7 19.8 - - + +
913D LYS* 3.5 30.4 + - - -
----------------------------------------------------------
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Residues in contact with VAL 909 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905C LEU 3.0 17.5 + - - +
906C GLU* 3.2 11.4 + - - +
908C GLU* 1.3 77.4 - - - +
910C ALA* 1.3 57.0 + - - +
913C LYS* 2.8 53.0 + - + +
905D LEU* 4.3 18.4 - - + +
908D GLU* 4.0 24.2 - - + +
909D VAL* 3.9 19.7 - - + +
912D LEU* 3.7 11.6 - - + +
----------------------------------------------------------
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Residues in contact with ALA 910 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
906C GLU 3.1 11.0 + - - +
907C ASN* 3.5 12.1 - - - +
908C GLU 3.1 0.2 - - - -
909C VAL* 1.3 76.9 - - - +
911C ARG* 1.3 64.3 + - - +
912C LEU 3.3 0.2 - - - -
913C LYS* 3.8 6.6 - - - +
914C LYS* 3.0 32.9 + - + +
----------------------------------------------------------
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Residues in contact with ARG 911 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
907C ASN 3.0 14.7 + - - +
908C GLU* 3.8 29.4 + - + +
910C ALA* 1.3 78.0 - - - +
912C LEU* 1.3 88.0 + - - +
914C LYS* 3.7 2.7 + - - +
915C LEU* 3.3 29.6 + - + +
913D LYS* 5.0 0.6 - - - +
918D GLU* 2.8 31.8 + - - -
----------------------------------------------------------
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Residues in contact with LEU 912 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
908C GLU* 3.0 30.4 + - - +
911C ARG* 1.3 94.6 - - - +
913C LYS* 1.3 60.7 + - - +
915C LEU* 3.7 8.5 - - + -
916C VAL* 3.0 33.8 + - - +
909D VAL* 4.0 7.6 - - + +
912D LEU* 3.4 30.9 - - + +
913D LYS* 3.4 28.9 - - + +
916D VAL* 3.9 13.5 - - + -
918D GLU* 3.0 30.1 - - - +
----------------------------------------------------------
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Residues in contact with LYS 913 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
909C VAL* 2.8 37.5 + - + +
910C ALA* 3.8 7.6 - - - +
911C ARG 3.3 0.4 - - - -
912C LEU* 1.3 73.0 - - - +
914C LYS* 1.3 57.9 + - + +
915C LEU 3.0 4.5 - - - -
916C VAL* 5.2 0.9 - - - -
917C GLY 2.9 23.6 + - - -
918C GLU* 3.3 34.0 + - + +
919C ARG* 4.1 36.8 - - - +
908D GLU* 3.7 21.4 + - - -
911D ARG* 4.7 2.0 - - - +
912D LEU* 4.2 11.2 - - + +
----------------------------------------------------------
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Residues in contact with LYS 914 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
910C ALA* 3.0 21.4 + - + +
911C ARG* 4.0 2.9 - - - +
913C LYS* 1.3 74.5 - - + +
915C LEU* 1.3 59.9 + - - +
917C GLY* 4.1 5.5 + - - -
918C GLU 5.4 0.2 - - - +
919C ARG 4.4 24.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 915 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
911C ARG* 3.3 24.5 + - + +
912C LEU* 3.5 13.7 - - + +
913C LYS 3.0 0.6 - - - -
914C LYS* 1.3 79.9 - - - +
916C VAL* 1.3 64.6 + - - +
917C GLY* 3.2 1.0 + - - -
916D VAL* 3.4 32.1 - - + -
918D GLU* 3.8 10.5 - - - +
----------------------------------------------------------
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Residues in contact with VAL 916 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912C LEU 3.0 15.0 + - - +
913C LYS* 4.5 0.9 - - - +
915C LEU* 1.3 75.2 - - - +
917C GLY* 1.3 62.6 + - - +
918C GLU* 3.9 14.4 - - + +
912D LEU* 4.4 11.0 - - + +
915D LEU* 3.9 30.1 - - + +
916D VAL* 3.1 37.9 - - + +
----------------------------------------------------------
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Residues in contact with GLY 917 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913C LYS 2.9 11.7 + - - -
914C LYS* 4.7 5.2 - - - -
915C LEU 3.2 2.9 - - - -
916C VAL* 1.3 82.1 - - - +
918C GLU* 1.3 69.4 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il