Contacts of the helix formed by residues 846 - 917 (chain A) in PDB entry 1NKN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 846 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
847A LYS* 1.3 72.3 + - + +
848A GLU* 3.4 4.2 - - - +
849A GLN* 2.7 44.2 + - + +
850A LEU* 3.6 12.3 + - + +
843B GLU 5.8 2.7 - - - +
846B MET* 4.5 26.5 - - + -
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Residues in contact with LYS 847 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846A MET* 1.3 86.9 - - + +
848A GLU* 1.3 69.8 + - + +
850A LEU* 3.2 19.7 + - - +
851A LYS* 3.3 10.4 + - - +
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Residues in contact with GLU 848 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846A MET 3.4 2.1 - - - +
847A LYS* 1.3 84.0 - - + +
849A GLN* 1.3 51.8 + - - +
851A LYS* 2.9 18.4 + - + +
852A GLN* 2.4 53.2 + - + +
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Residues in contact with GLN 849 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846A MET* 2.7 42.7 + - + +
848A GLU* 1.3 76.6 - - - +
850A LEU* 1.3 76.6 + - - +
852A GLN* 2.9 5.6 + - - -
853A MET* 2.5 41.6 + - - +
846B MET* 4.6 2.9 - - - +
849B GLN* 4.0 27.3 + - - +
850B LEU* 3.7 41.0 + - + +
853B MET* 3.0 21.9 - - + +
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Residues in contact with LEU 850 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846A MET* 4.2 13.0 - - + +
847A LYS* 3.2 13.6 + - - +
849A GLN* 1.3 95.8 - - - +
851A LYS* 1.3 65.8 + - + +
853A MET* 3.7 14.5 - - + +
854A ASP* 3.0 29.6 + - + +
849B GLN* 5.6 4.7 - - - +
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Residues in contact with LYS 851 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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847A LYS 3.3 6.3 + - - +
848A GLU* 2.9 21.4 + - + +
850A LEU* 1.3 83.1 - - + +
852A GLN* 1.3 60.5 + - - +
853A MET 3.0 1.3 - - - -
854A ASP* 2.8 27.3 + - + +
855A LYS* 2.9 15.3 + - + +
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Residues in contact with GLN 852 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
848A GLU* 2.4 42.1 + - + +
849A GLN* 3.5 7.8 - - - +
851A LYS* 1.3 75.2 - - - +
853A MET* 1.3 56.6 + - - +
855A LYS* 3.7 6.8 + - - +
856A MET* 3.2 36.8 + - + +
853B MET* 3.7 14.3 - - + +
857B LYS* 3.7 31.7 - - - +
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Residues in contact with MET 853 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849A GLN* 2.5 27.0 + - - +
850A LEU* 3.7 16.2 - - + +
852A GLN* 1.3 73.6 - - - +
854A ASP* 1.3 59.5 + - - +
856A MET* 4.0 2.5 - - - -
857A LYS* 2.8 60.5 + - + +
849B GLN* 3.5 33.7 - - - +
852B GLN* 4.1 19.5 - - - +
853B MET* 3.3 23.8 - - + +
856B MET* 3.0 25.0 - - + +
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Residues in contact with ASP 854 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
850A LEU* 3.0 22.6 + - + +
851A LYS* 2.8 14.6 + - + +
853A MET* 1.3 78.0 - - - +
855A LYS* 1.3 63.7 + - - +
857A LYS* 3.3 21.5 + - - +
858A GLU* 3.4 16.5 + - - +
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Residues in contact with LYS 855 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
851A LYS* 2.9 14.2 + - + +
852A GLN* 3.9 7.4 - - - +
854A ASP* 1.3 77.8 + - - +
856A MET* 1.3 59.1 + - - +
858A GLU* 2.9 25.2 + - + +
859A ASP* 3.0 26.7 + - - +
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Residues in contact with MET 856 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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852A GLN* 3.2 36.3 + - + +
853A MET 3.4 0.2 - - - +
855A LYS* 1.3 80.1 - - - +
857A LYS* 1.3 55.1 + - - +
859A ASP* 3.3 8.0 + - - +
860A LEU* 2.9 30.5 + - - +
853B MET* 3.8 19.3 - - - +
856B MET* 3.2 26.0 - - + +
857B LYS* 3.7 46.4 - - + -
860B LEU* 4.3 20.5 - - + +
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Residues in contact with LYS 857 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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853A MET* 2.8 53.0 + - + +
854A ASP* 3.5 13.7 - - - +
855A LYS 3.1 0.2 - - - -
856A MET* 1.3 76.7 - - - +
858A GLU* 1.3 61.1 + - + +
860A LEU* 3.9 3.7 - - - +
861A ALA* 3.0 28.4 + - - +
852B GLN* 5.7 3.5 + - - -
856B MET* 3.1 20.8 - - + +
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Residues in contact with GLU 858 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
854A ASP* 3.4 13.4 + - - +
855A LYS* 2.9 11.6 + - + +
857A LYS* 1.3 77.7 - - + +
859A ASP* 1.3 61.9 + - - +
861A ALA* 3.8 15.6 - - - +
862A LYS* 3.0 27.9 + - - +
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Residues in contact with ASP 859 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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855A LYS* 3.0 34.7 + - - +
856A MET* 3.7 9.1 - - - +
857A LYS 3.3 0.2 - - - -
858A GLU* 1.3 76.3 - - - +
860A LEU* 1.3 60.1 + - - +
862A LYS* 3.2 12.2 + - - +
863A THR* 2.8 35.5 + - - +
860B LEU* 3.9 20.4 - - + -
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Residues in contact with LEU 860 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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856A MET 2.9 17.7 + - - +
857A LYS* 3.9 4.9 - - - +
859A ASP* 1.3 75.7 - - - +
861A ALA* 1.3 54.4 + - - +
863A THR* 3.2 0.9 + - - -
864A GLU* 2.7 61.1 + - + +
856B MET* 4.1 25.8 - - + -
859B ASP* 3.7 25.1 - - + +
860B LEU* 3.5 39.9 - - + +
863B THR* 3.9 9.9 - - - +
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Residues in contact with ALA 861 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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857A LYS 3.0 20.2 + - - +
858A GLU* 3.8 17.7 - - - +
859A ASP 3.2 0.2 - - - -
860A LEU* 1.3 78.2 - - - +
862A LYS* 1.3 56.5 + - - +
864A GLU* 3.8 10.9 - - - +
865A ARG* 3.0 29.3 + - - +
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Residues in contact with LYS 862 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
858A GLU 3.0 18.8 + - - +
859A ASP* 3.5 12.1 - - - +
861A ALA* 1.3 74.7 - - - +
863A THR* 1.3 69.1 + - - +
865A ARG* 3.1 29.0 + - - +
866A ILE* 2.9 48.7 + - + +
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Residues in contact with THR 863 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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859A ASP* 2.8 23.2 + - - +
860A LEU 3.7 2.9 - - - -
862A LYS* 1.3 76.3 - - - +
864A GLU* 1.3 56.9 + - - +
866A ILE* 3.8 7.3 - - - +
867A LYS* 2.9 27.9 + - - +
860B LEU* 3.8 14.6 - - - +
863B THR* 3.3 25.8 - - + +
864B GLU* 3.7 39.6 + - + +
867B LYS* 4.2 9.2 + - + +
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Residues in contact with GLU 864 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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860A LEU* 2.7 46.1 + - + +
861A ALA* 3.8 11.2 - - - +
863A THR* 1.3 71.0 - - - +
865A ARG* 1.3 66.8 + - - +
867A LYS* 3.1 5.7 + - + +
868A LYS* 2.9 23.0 + - - +
859B ASP* 5.8 1.2 - - - +
863B THR* 3.9 22.3 + - + +
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Residues in contact with ARG 865 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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861A ALA 3.0 19.3 + - - +
862A LYS* 3.6 29.4 - - - +
864A GLU* 1.3 75.9 - - - +
866A ILE* 1.3 82.1 + - - +
868A LYS* 3.3 7.7 + - - +
869A GLU* 2.9 49.3 + - + +
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Residues in contact with ILE 866 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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862A LYS* 2.9 48.4 + - + +
863A THR* 3.9 4.3 - - - +
865A ARG* 1.3 92.3 - - - +
867A LYS* 1.3 67.1 + - - +
869A GLU* 3.2 16.9 + - + +
870A LEU* 3.1 33.6 + - + +
867B LYS* 3.7 31.6 - - + +
871B GLU* 5.8 1.1 - - - +
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Residues in contact with LYS 867 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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863A THR 2.9 19.1 + - - +
864A GLU* 3.4 7.9 - - + +
866A ILE* 1.3 77.8 - - - +
868A LYS* 1.3 57.2 + - - +
870A LEU* 3.3 12.1 + - - +
871A GLU* 2.8 59.6 + - + +
863B THR* 4.0 21.1 - - + +
866B ILE* 3.6 39.9 - - + -
867B LYS* 4.5 9.4 - - + +
870B LEU* 3.9 7.5 - - + +
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Residues in contact with LYS 868 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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864A GLU 2.9 12.7 + - - +
865A ARG* 3.6 11.2 - - + +
866A ILE 3.2 0.2 - - - -
867A LYS* 1.3 79.6 - - - +
869A GLU* 1.3 60.8 + - - +
871A GLU* 2.8 45.3 + - - +
872A GLU* 3.1 41.6 + - + +
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Residues in contact with GLU 869 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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865A ARG* 2.9 51.3 + - + +
866A ILE* 3.2 22.5 + - - +
868A LYS* 1.3 76.7 - - - +
870A LEU* 1.3 58.8 + - + +
872A GLU* 3.3 7.6 + - - +
873A GLN* 2.8 29.0 + - - +
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Residues in contact with LEU 870 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
866A ILE* 3.1 23.2 + - + +
867A LYS* 3.6 6.5 - - - +
869A GLU* 1.3 76.1 - - + +
871A GLU* 1.3 54.8 + - - +
873A GLN* 3.8 19.5 - - + +
874A ASN* 2.7 34.1 + - - +
867B LYS* 3.5 47.1 - - + +
870B LEU* 3.9 16.4 - - + -
871B GLU* 3.7 21.8 - - + +
874B ASN* 3.2 14.3 + - - +
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Residues in contact with GLU 871 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
867A LYS* 2.8 56.4 + - - +
868A LYS* 2.8 42.6 + - - +
869A GLU 3.3 0.2 - - - -
870A LEU* 1.3 74.5 - - - +
872A GLU* 1.3 67.2 + - - +
874A ASN* 3.1 10.1 + - - +
875A VAL* 2.9 27.3 + - + +
866B ILE* 5.3 0.5 - - - +
870B LEU* 3.8 17.1 - - + +
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Residues in contact with GLU 872 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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868A LYS* 3.1 37.8 + - + +
869A GLU* 3.6 9.4 - - - +
871A GLU* 1.3 78.1 - - - +
873A GLN* 1.3 63.4 + - - +
875A VAL* 3.0 19.6 + - - +
876A THR* 3.0 24.8 + - - +
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Residues in contact with GLN 873 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
869A GLU 2.8 20.7 + - - +
870A LEU* 3.2 16.9 + - - +
872A GLU* 1.3 73.1 - - - +
874A ASN* 1.3 64.0 + - - +
876A THR* 3.1 8.6 + - - +
877A LEU* 3.0 39.8 + - + +
874B ASN* 2.9 29.0 + - - +
878B LEU* 5.1 11.1 - - - +
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Residues in contact with ASN 874 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
870A LEU 2.7 18.2 + - - +
871A GLU* 3.3 9.4 - - - +
873A GLN* 1.3 75.3 - - - +
875A VAL* 1.3 64.9 + - + +
877A LEU* 3.3 3.6 + - - +
878A LEU* 3.2 36.7 + - - +
870B LEU* 4.5 11.3 - - + +
873B GLN* 4.1 21.3 + - - +
874B ASN* 2.6 29.0 + - - +
877B LEU* 3.4 18.1 - - - +
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Residues in contact with VAL 875 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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871A GLU* 2.9 18.4 + - + +
872A GLU* 3.5 20.0 - - - +
874A ASN* 1.3 81.2 - - + +
876A THR* 1.3 63.5 + - - +
878A LEU* 3.4 10.1 + - + +
879A GLU* 3.2 32.6 + - + +
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Residues in contact with THR 876 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
872A GLU 3.0 13.2 + - - -
873A GLN* 3.1 11.1 + - - -
875A VAL* 1.3 75.8 - - - +
877A LEU* 1.3 59.5 + - + +
879A GLU* 2.9 22.9 + - + +
880A GLN* 2.9 57.4 + - + +
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Residues in contact with LEU 877 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
873A GLN* 3.0 41.6 + - + +
874A ASN 3.3 3.6 + - - +
876A THR* 1.3 75.1 - - + +
878A LEU* 1.3 66.9 + - - +
880A GLN* 3.0 19.4 + - - +
881A LYS* 2.8 29.1 + - + +
874B ASN* 3.7 33.2 - - + +
877B LEU* 4.0 19.7 - - + +
878B LEU* 4.5 21.3 - - + +
881B LYS* 3.9 20.1 - - + +
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Residues in contact with LEU 878 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
874A ASN* 3.2 31.1 + - - +
875A VAL* 3.4 11.2 + - + +
876A THR 3.3 0.2 - - - -
877A LEU* 1.3 76.1 - - - +
879A GLU* 1.3 61.9 + - - +
881A LYS* 3.4 11.5 + - + +
882A ASN* 3.2 24.3 + - - +
877B LEU* 3.8 28.3 - - + -
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Residues in contact with GLU 879 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
875A VAL* 3.2 24.5 + - + +
876A THR* 2.9 36.1 + - - +
878A LEU* 1.3 77.8 - - - +
880A GLN* 1.3 61.5 + - + +
882A ASN* 3.5 6.6 - - - +
883A ASP* 2.7 38.6 + - - +
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Residues in contact with GLN 880 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
876A THR* 2.9 43.0 + - + +
877A LEU* 3.6 16.5 - - - +
879A GLU* 1.3 80.3 - - + +
881A LYS* 1.3 65.7 + - - +
883A ASP* 3.1 14.0 + - - +
884A LEU* 3.0 28.6 + - + +
881B LYS* 3.1 38.3 + - + +
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Residues in contact with LYS 881 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877A LEU* 2.8 16.9 + - + +
878A LEU* 3.8 12.0 - - + +
880A GLN* 1.3 76.4 - - - +
882A ASN* 1.3 57.6 + - - +
884A LEU* 3.2 13.1 + - - +
885A PHE* 3.0 46.0 + - + -
877B LEU* 4.0 27.1 - - + +
880B GLN* 3.0 35.6 + - + +
881B LYS* 4.1 17.4 - - + +
884B LEU* 4.0 24.0 - - + +
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Residues in contact with ASN 882 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
878A LEU 3.2 15.5 + - - +
879A GLU* 3.5 9.2 - - - +
881A LYS* 1.3 77.8 - - - +
883A ASP* 1.3 67.0 + - - +
885A PHE* 3.2 13.8 + - - +
886A GLY* 3.0 19.6 + - - -
845D GLU* 4.4 13.4 - - - +
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Residues in contact with ASP 883 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
879A GLU* 2.7 27.2 + - - +
880A GLN* 3.1 15.3 + - - +
882A ASN* 1.3 78.9 - - - +
884A LEU* 1.3 57.7 + - + +
886A GLY* 3.2 3.1 + - - +
887A SER* 2.9 30.7 + - - -
845D GLU* 5.1 5.7 - - - +
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Residues in contact with LEU 884 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
880A GLN* 3.0 20.1 + - + +
881A LYS* 3.2 6.9 + - - +
883A ASP* 1.3 74.4 - - + +
885A PHE* 1.3 60.4 + - - +
887A SER* 3.2 4.6 + - - +
888A MET* 2.9 36.8 + - - +
881B LYS* 3.6 43.3 - - + +
884B LEU* 4.3 17.3 - - + -
885B PHE* 3.7 35.0 - - + +
888B MET* 3.8 23.1 - - + -
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Residues in contact with PHE 885 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
881A LYS* 3.0 38.8 + - + -
882A ASN* 3.2 12.8 + - - +
884A LEU* 1.3 76.1 - - - +
886A GLY* 1.3 62.5 + - - +
888A MET* 3.4 13.8 + - + +
889A LYS* 3.1 24.1 + - - +
884B LEU* 3.6 42.4 - - + -
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Residues in contact with GLY 886 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
882A ASN 3.0 13.9 + - - -
883A ASP* 3.2 4.7 + - - -
884A LEU 3.2 0.4 - - - -
885A PHE* 1.3 78.9 - - - +
887A SER* 1.3 58.3 + - - +
889A LYS* 3.6 6.8 + - - +
890A GLN* 3.4 27.7 + - - +
845D GLU* 6.1 1.3 - - - -
852D GLN* 5.2 2.3 + - - -
----------------------------------------------------------
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Residues in contact with SER 887 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
883A ASP 2.9 17.0 + - - -
884A LEU* 3.2 6.0 + - - -
886A GLY* 1.3 75.0 - - - +
888A MET* 1.3 64.2 + - - +
890A GLN* 3.2 16.6 + - - +
891A LEU* 3.1 29.6 + - - +
888B MET* 4.0 22.0 - - - -
----------------------------------------------------------
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Residues in contact with MET 888 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
884A LEU* 2.9 22.5 + - - +
885A PHE* 3.4 13.2 + - + +
887A SER* 1.3 76.3 - - - +
889A LYS* 1.3 58.2 + - - +
891A LEU* 3.2 2.3 + - - -
892A GLU* 2.8 46.9 + - + +
884B LEU* 3.8 37.9 - - + +
887B SER* 3.6 22.4 - - - +
888B MET* 4.0 16.8 - - + -
891B LEU* 3.6 24.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 889 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
885A PHE 3.1 16.6 + - - +
886A GLY* 3.8 7.9 - - - +
887A SER 3.2 0.2 - - - -
888A MET* 1.3 76.2 - - - +
890A GLN* 1.3 62.3 + - + +
892A GLU* 3.5 19.0 + - - +
893A ASP* 3.3 51.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 890 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
886A GLY 3.4 15.2 + - - +
887A SER* 3.2 18.0 + - - +
888A MET 3.2 0.4 - - - -
889A LYS* 1.3 80.2 - - + +
891A LEU* 1.3 57.9 + - + +
893A ASP* 3.5 7.3 + - - +
894A LYS* 3.1 26.2 + - - +
848D GLU* 4.4 5.2 + - - +
852D GLN* 2.7 51.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 891 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
887A SER* 3.1 20.7 + - - +
888A MET* 3.2 7.4 + - - +
890A GLN* 1.3 75.2 - - + +
892A GLU* 1.3 61.7 + - - +
894A LYS* 3.2 8.1 + - + +
895A VAL* 2.8 34.2 + - - +
888B MET* 3.4 43.7 - - + +
891B LEU* 3.8 15.5 - - + -
892B GLU* 4.1 19.5 - - + +
895B VAL* 4.0 23.7 - - + +
----------------------------------------------------------
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Residues in contact with GLU 892 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
888A MET* 2.8 35.5 + - - +
889A LYS* 3.8 24.9 + - + +
890A GLN 3.3 0.4 - - - -
891A LEU* 1.3 77.6 - - - +
893A ASP* 1.3 61.5 + - - +
895A VAL* 3.3 7.7 + - - +
896A GLU* 3.0 30.9 + - - +
891B LEU* 3.8 24.4 - - + +
----------------------------------------------------------
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Residues in contact with ASP 893 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
889A LYS* 3.3 47.2 + - - +
890A GLN* 3.9 6.4 - - - +
891A LEU 3.2 0.4 - - - -
892A GLU* 1.3 75.7 - - - +
894A LYS* 1.3 66.7 + - - +
896A GLU* 3.1 12.4 + - - +
897A GLU* 2.9 24.1 + - - +
857C LYS* 6.2 2.0 - - - +
----------------------------------------------------------
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Residues in contact with LYS 894 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
890A GLN 3.1 14.6 + - - +
891A LEU* 3.4 14.6 - - + +
893A ASP* 1.3 77.1 - - - +
895A VAL* 1.3 62.6 + - - +
897A GLU* 3.2 35.9 + - - +
898A LEU* 2.9 50.6 + - + +
901A LYS* 5.6 0.8 - - - +
895B VAL* 4.3 18.2 - - + -
899B LEU* 4.9 7.0 - - - +
855D LYS* 6.3 0.8 - - - +
859D ASP* 4.8 13.3 + - - -
862D LYS* 5.9 2.2 - - - +
----------------------------------------------------------
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Residues in contact with VAL 895 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891A LEU 2.8 21.1 + - - +
892A GLU* 3.6 7.4 - - - +
893A ASP 3.2 0.2 - - - -
894A LYS* 1.3 76.2 - - - +
896A GLU* 1.3 65.9 + - + +
898A LEU* 4.6 2.2 - - - -
899A LEU* 2.9 36.0 + - + +
891B LEU* 4.3 15.3 - - + +
894B LYS* 4.2 25.8 - - + -
895B VAL* 3.8 21.3 - - + +
898B LEU* 3.8 18.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 896 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
892A GLU 3.0 18.0 + - - +
893A ASP* 3.1 16.4 + - - +
895A VAL* 1.3 77.1 - - + +
897A GLU* 1.3 63.4 + - - +
899A LEU* 3.0 29.5 + - - +
900A SER* 3.1 16.9 + - - -
----------------------------------------------------------
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Residues in contact with GLU 897 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
893A ASP 2.9 11.8 + - - +
894A LYS* 3.5 29.7 + - - +
896A GLU* 1.3 77.2 - - - +
898A LEU* 1.3 93.5 + - - +
900A SER* 3.3 9.3 + - - -
901A LYS* 3.1 48.7 + - - +
860C LEU* 6.1 0.5 - - - +
864C GLU* 6.0 3.6 - - + -
868C LYS* 4.9 0.3 + - - -
859D ASP* 4.8 9.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 898 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894A LYS* 2.9 32.2 + - + +
895A VAL* 4.8 0.2 - - - -
897A GLU* 1.3 94.0 - - - +
899A LEU* 1.3 54.9 + - - +
901A LYS* 3.2 10.8 + - + +
902A ASN* 2.7 34.7 + - - +
895B VAL* 3.6 41.1 - - + +
898B LEU* 3.7 25.5 - - + +
899B LEU* 3.3 31.2 - - + -
902B ASN* 3.3 12.6 - - - +
----------------------------------------------------------
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Residues in contact with LEU 899 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
895A VAL* 2.9 27.9 + - + +
896A GLU* 3.0 23.1 + - - +
898A LEU* 1.3 74.7 - - - +
900A SER* 1.3 59.6 + - - +
902A ASN* 3.2 9.5 + - - +
903A TYR* 2.9 67.3 + - + +
894B LYS* 5.3 6.5 - - - -
898B LEU* 3.8 24.5 - - + -
----------------------------------------------------------
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Residues in contact with SER 900 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
896A GLU 3.1 12.6 + - - -
897A GLU* 3.6 9.7 - - - -
899A LEU* 1.3 76.6 - - - +
901A LYS* 1.3 56.0 - - - +
903A TYR* 3.2 8.6 + - - +
904A HIS* 2.9 31.0 + - - +
868C LYS* 3.1 24.2 + - - -
----------------------------------------------------------
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Residues in contact with LYS 901 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894A LYS* 5.6 1.4 - - - +
897A GLU* 3.1 52.3 + - - +
898A LEU* 3.2 15.0 + - + +
900A SER* 1.3 77.0 - - - +
902A ASN* 1.3 57.9 + - - +
904A HIS* 3.8 3.3 - - - +
905A LEU* 2.9 40.7 + - + +
902B ASN* 3.9 9.4 - - - +
864C GLU* 3.6 37.5 + - - +
867C LYS* 4.7 9.6 - - - +
868C LYS* 4.2 10.5 - - - +
862D LYS* 6.1 2.0 - - - +
863D THR* 5.8 0.4 + - - -
----------------------------------------------------------
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Residues in contact with ASN 902 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
898A LEU 2.7 18.4 + - - +
899A LEU* 3.4 14.1 - - + +
900A SER 3.2 0.2 - - - -
901A LYS* 1.3 74.5 - - - +
903A TYR* 1.3 80.2 + - - +
905A LEU* 3.4 3.4 + - - +
906A GLU* 3.0 36.8 + - - +
898B LEU* 5.2 5.6 - - + -
901B LYS* 4.1 18.3 - - - +
902B ASN* 3.0 29.7 + - - +
905B LEU* 3.5 15.3 - - - +
----------------------------------------------------------
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Residues in contact with TYR 903 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
899A LEU* 2.9 49.0 + - + +
900A SER* 3.9 6.1 - - - +
902A ASN* 1.3 92.5 - - - +
904A HIS* 1.3 65.8 + - - +
906A GLU* 3.3 9.2 + - + +
907A ASN* 3.2 30.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 904 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
900A SER 2.9 17.7 + - - +
901A LYS* 3.8 5.2 - - - +
903A TYR* 1.3 75.8 - - - +
905A LEU* 1.3 69.0 + - + +
907A ASN* 3.2 10.9 + - - +
908A GLU* 3.1 30.4 + - + +
867C LYS* 4.9 2.7 - - - -
868C LYS* 3.7 46.3 + - + +
871C GLU* 2.6 39.7 + - + +
872C GLU* 3.0 31.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 905 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
901A LYS* 2.9 25.6 + - + +
902A ASN 3.7 4.7 - - - +
904A HIS* 1.3 80.7 - - + +
906A GLU* 1.3 64.3 + - - +
908A GLU* 3.2 21.7 + - - +
909A VAL* 3.0 29.2 + - - +
902B ASN* 3.9 28.9 - - + +
905B LEU* 3.9 12.3 - - + -
906B GLU* 3.7 39.9 - - + +
909B VAL* 4.0 17.0 - - + -
871C GLU* 5.6 3.1 - - - +
----------------------------------------------------------
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Residues in contact with GLU 906 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
902A ASN* 3.0 32.8 + - - +
903A TYR* 3.6 9.9 - - + +
904A HIS 3.3 0.2 - - - -
905A LEU* 1.3 76.0 - - - +
907A ASN* 1.3 62.6 + - - +
909A VAL* 3.6 7.3 + - - +
910A ALA* 3.0 29.6 + - - +
905B LEU* 3.8 26.8 - - + +
----------------------------------------------------------
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Residues in contact with ASN 907 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
903A TYR* 3.2 17.1 + - - +
904A HIS* 3.2 13.6 + - - +
906A GLU* 1.3 80.6 + - - +
908A GLU* 1.3 64.3 + - - +
910A ALA* 3.9 5.5 - - - +
911A ARG* 3.1 31.7 + - + +
872C GLU* 5.1 9.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU 908 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
904A HIS* 3.1 31.7 + - + +
905A LEU* 3.2 24.1 + - - +
907A ASN* 1.3 74.7 - - - +
909A VAL* 1.3 67.5 + - - +
911A ARG* 3.1 7.0 + - - +
912A LEU* 2.9 30.1 + - + +
909B VAL* 3.8 19.3 - - + +
913B LYS* 3.6 22.5 + - - -
871C GLU* 3.8 27.6 - - - +
872C GLU* 4.8 7.4 + - - +
875C VAL* 3.7 20.8 - - + +
----------------------------------------------------------
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Residues in contact with VAL 909 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905A LEU 3.0 16.7 + - - +
906A GLU* 3.9 11.0 - - - +
908A GLU* 1.3 79.6 - - - +
910A ALA* 1.3 51.9 + - - +
912A LEU* 3.3 6.6 + - - +
913A LYS* 2.7 65.2 + - + +
905B LEU* 3.8 33.2 - - + +
908B GLU* 3.9 21.8 - - + +
909B VAL* 3.9 12.1 - - + +
912B LEU* 4.6 5.5 - - + +
----------------------------------------------------------
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Residues in contact with ALA 910 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
906A GLU 3.0 19.0 + - - +
907A ASN* 3.9 8.7 - - - +
909A VAL* 1.3 78.0 - - - +
911A ARG* 1.3 63.5 + - + +
913A LYS* 3.2 18.9 + - - +
914A LYS* 3.2 20.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 911 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
907A ASN* 3.1 21.7 + - + +
908A GLU* 3.1 5.8 + - - +
910A ALA* 1.3 75.4 - - + +
912A LEU* 1.3 63.1 + - - +
914A LYS* 3.3 9.4 + - - +
915A LEU* 3.1 21.5 + - - +
872C GLU* 2.9 60.8 + - - +
875C VAL* 4.1 18.8 - - + +
876C THR* 3.1 16.3 + - - +
879C GLU* 2.8 49.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 912 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
908A GLU* 2.9 23.6 + - - +
909A VAL* 3.8 3.6 - - - +
911A ARG* 1.3 74.8 - - - +
913A LYS* 1.3 65.7 + - - +
915A LEU* 3.7 15.2 - - + +
916A VAL* 3.2 28.3 + - + +
909B VAL* 4.0 23.1 - - + +
912B LEU* 3.9 29.2 - - + +
913B LYS* 3.9 22.7 - - + +
916B VAL* 4.8 7.4 - - + -
875C VAL* 3.9 24.9 - - + -
878C LEU* 4.1 22.2 - - + -
----------------------------------------------------------
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Residues in contact with LYS 913 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
909A VAL* 2.7 48.9 + - + +
910A ALA* 3.3 10.8 - - - +
911A ARG 3.2 0.2 - - - -
912A LEU* 1.3 74.8 - - - +
914A LYS* 1.3 73.5 + - - +
916A VAL* 3.4 0.5 + - - -
917A GLY 3.1 4.2 + - - -
918A GLU* 2.9 68.7 + - + +
919A ARG* 5.0 4.4 - - - +
908B GLU* 4.4 11.4 - - - -
911B ARG* 4.6 0.9 - - - +
912B LEU* 4.7 7.2 - - + +
----------------------------------------------------------
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Residues in contact with LYS 914 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
910A ALA* 3.2 13.8 + - - +
911A ARG* 3.6 8.1 - - - +
913A LYS* 1.3 90.3 - - - +
915A LEU* 1.3 55.2 + - - +
917A GLY* 2.8 25.2 + - - -
918A GLU 3.4 17.5 + - - -
919A ARG 4.2 9.5 - - - -
879C GLU* 6.1 0.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 915 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
911A ARG 3.1 12.8 + - - +
912A LEU* 3.7 18.2 - - + +
914A LYS* 1.3 78.8 - - - +
916A VAL* 1.3 58.5 + - - +
917A GLY 3.9 0.2 + - - -
916B VAL* 3.9 26.9 - - + -
878C LEU* 4.0 27.6 - - + +
879C GLU* 4.1 25.4 - - + +
882C ASN* 3.7 42.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 916 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912A LEU 3.2 17.7 + - - +
913A LYS 4.2 1.3 - - - +
914A LYS 3.0 0.8 - - - -
915A LEU* 1.3 77.0 - - - +
917A GLY* 1.3 63.4 + - - +
918A GLU* 5.0 6.2 - - + +
912B LEU* 4.3 15.3 - - + +
915B LEU* 3.4 39.3 - - + -
916B VAL* 3.1 37.2 - - + +
----------------------------------------------------------
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Residues in contact with GLY 917 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913A LYS 3.1 0.2 + - - -
914A LYS* 2.8 15.6 + - - -
915A LEU 3.5 0.2 - - - -
916A VAL* 1.3 80.9 - - - +
918A GLU* 1.3 60.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il