Contacts of the helix formed by residues 1010 - 1047 (chain C) in PDB entry 1OW8
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR1010 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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981B ARG* 3.7 27.2 + - - +
985B MET* 3.7 20.0 - - + -
1007C TYR* 3.4 23.3 + - + +
1008C VAL 3.1 14.9 + - - -
1009C MET* 1.3 74.7 + - - +
1011C SER* 1.3 74.2 + - - +
1012C LEU* 3.1 17.3 - - + +
1013C GLN* 3.4 11.8 + - - +
1014C GLN* 4.4 2.6 + - - +
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Residues in contact with SER1011 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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981B ARG* 5.7 2.9 + - - +
982B GLU* 5.8 4.8 - - - +
985B MET* 3.2 28.9 - - - +
1010C THR* 1.3 76.7 - - - +
1012C LEU* 1.3 61.6 + - - +
1013C GLN 3.4 1.4 + - - -
1014C GLN* 3.6 14.6 + - - +
1015C GLU* 4.0 7.3 + - - +
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Residues in contact with LEU1012 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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985B MET* 3.7 27.6 - - + +
986B ALA 5.2 0.2 - - - +
988B LYS* 4.1 21.3 - - + -
989B LEU* 4.1 23.1 - - + +
1007C TYR* 4.0 25.8 - - + -
1010C THR* 3.1 9.6 - - + -
1011C SER* 1.3 80.5 + - - +
1013C GLN* 1.3 63.1 + - - +
1014C GLN 3.4 0.2 - - - -
1015C GLU* 3.4 15.3 + - + +
1016C TYR* 3.2 57.8 + - + +
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Residues in contact with GLN1013 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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946C PRO* 5.7 2.6 - - - +
947C PRO* 5.3 1.0 - - - +
950C TYR* 4.6 4.6 + - - +
1004C ALA* 4.0 16.4 - - - +
1007C TYR* 3.0 24.8 + - - +
1008C VAL* 3.3 24.6 - - + +
1009C MET* 3.6 11.7 + - - +
1010C THR 3.4 11.0 + - - +
1011C SER 3.3 1.6 - - - -
1012C LEU* 1.3 75.8 - - - +
1014C GLN* 1.3 70.2 + - - +
1015C GLU 3.2 0.9 + - - -
1016C TYR* 3.5 3.5 + - - +
1017C LYS* 3.3 54.3 + - + +
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Residues in contact with GLN1014 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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943C GLN* 5.9 7.2 - - - +
1010C THR 4.4 2.1 + - - +
1011C SER 3.6 9.2 + - - +
1012C LEU 3.4 0.2 - - - -
1013C GLN* 1.3 86.7 - - - +
1015C GLU* 1.3 66.5 + - - +
1017C LYS* 3.4 10.8 - - + +
1018C LYS* 3.3 53.1 + - + +
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Residues in contact with GLU1015 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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989B LEU* 4.0 24.5 - - + +
1030B ASP* 5.3 2.3 - - - +
1011C SER 4.0 3.1 + - - +
1012C LEU* 3.4 22.5 + - + +
1013C GLN 3.1 0.6 - - - -
1014C GLN* 1.3 80.9 + - - +
1016C TYR* 1.3 60.7 + - + +
1017C LYS 2.9 4.9 - - - -
1018C LYS* 2.9 32.7 + - - +
1019C GLN* 2.8 40.6 + - - +
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Residues in contact with TYR1016 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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988B LYS 3.9 2.9 + - - -
989B LEU* 3.9 13.9 - - + -
992B SER* 3.1 37.2 + - - -
1000C LYS* 3.6 15.5 - - + +
1003C LEU* 3.4 41.7 - - + +
1004C ALA* 3.7 24.0 - - - +
1007C TYR* 3.7 20.4 - + + -
1012C LEU* 3.2 51.6 + - + +
1013C GLN 3.5 0.4 + - - +
1015C GLU* 1.3 76.4 - - + +
1017C LYS* 1.3 57.6 + - - +
1019C GLN* 3.7 28.8 - - + +
1020C MET* 3.1 21.0 + - - +
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Residues in contact with LYS1017 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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942C ILE* 3.0 32.0 + - + +
943C GLN* 2.6 35.6 + - - +
944C PRO 3.5 3.8 + - - -
945C ALA 3.1 13.9 + - - -
950C TYR* 3.9 20.2 - - + -
1004C ALA* 4.8 8.3 - - + -
1013C GLN* 3.3 41.3 + - - +
1014C GLN* 3.4 16.2 - - + +
1015C GLU 2.9 0.6 - - - -
1016C TYR* 1.3 78.4 - - - +
1018C LYS* 1.3 65.4 + - + +
1019C GLN 3.1 0.2 - - - -
1020C MET* 3.0 17.7 + - - +
1021C LEU* 3.0 19.8 + - - +
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Residues in contact with LYS1018 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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943C GLN* 5.5 12.6 - - - +
1014C GLN* 3.3 34.0 + - + +
1015C GLU* 2.9 21.3 + - - +
1017C LYS* 1.3 78.8 - - + +
1019C GLN* 1.3 57.9 + - + +
1021C LEU* 3.4 10.7 + - + +
1022C THR* 3.0 30.6 + - - -
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Residues in contact with GLN1019 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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989B LEU* 4.0 11.5 - - - +
992B SER* 4.5 3.1 + - - -
993B ASP* 4.7 6.9 + - - +
996B GLU* 3.8 5.7 - - - +
996C GLU* 4.9 0.7 - - - +
1000C LYS* 3.1 46.7 + - + +
1015C GLU* 2.8 45.3 + - - +
1016C TYR* 3.7 27.1 - - - +
1017C LYS 3.1 0.2 - - - -
1018C LYS* 1.3 76.7 - - + +
1020C MET* 1.3 63.5 + - - +
1022C THR* 3.4 9.6 - - + +
1023C ALA* 3.0 22.5 + - - +
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Residues in contact with MET1020 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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938C MET* 4.6 6.1 - - - -
942C ILE* 3.2 34.3 - - + -
950C TYR* 4.1 18.2 - - + -
954C VAL* 4.1 20.4 - - + -
997C LEU* 3.7 22.2 - - + +
1000C LYS* 3.7 34.1 - - + +
1001C MET* 3.7 10.8 - - + -
1004C ALA* 4.2 11.2 - - - -
1016C TYR 3.1 10.8 + - - +
1017C LYS* 3.0 12.0 + - - +
1019C GLN* 1.3 74.0 - - - +
1021C LEU* 1.3 70.3 + - + +
1022C THR 2.9 1.1 - - - -
1023C ALA* 2.8 15.0 + - - +
1024C ALA* 2.8 14.6 + - - +
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Residues in contact with LEU1021 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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938C MET* 4.6 6.5 - - + -
939C SER* 3.6 39.6 - - - +
942C ILE* 3.6 30.3 - - + -
943C GLN* 5.3 14.4 - - + +
1017C LYS 3.0 15.5 + - - +
1018C LYS* 3.7 10.3 - - + +
1020C MET* 1.3 80.4 - - + +
1022C THR* 1.3 63.3 + - - +
1024C ALA* 3.4 5.7 + - + +
1025C HIS* 3.0 25.4 + - - +
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Residues in contact with THR1022 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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996C GLU* 4.4 8.5 - - - +
1018C LYS 3.0 16.3 + - - -
1019C GLN* 3.4 14.0 - - + +
1020C MET 2.9 1.2 + - - -
1021C LEU* 1.3 77.1 - - - +
1023C ALA* 1.3 64.4 + - - +
1025C HIS* 3.1 9.3 + - - +
1026C ALA* 3.1 22.0 + - + +
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Residues in contact with ALA1023 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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993C ASP* 4.2 7.4 - - - +
996C GLU* 3.4 30.1 - - + +
997C LEU* 3.7 32.7 - - - +
1000C LYS* 4.8 0.9 - - + -
1019C GLN 3.0 9.3 + - - +
1020C MET* 2.8 12.4 + - - +
1022C THR* 1.3 76.8 - - - +
1024C ALA* 1.3 59.7 + - - +
1026C ALA* 3.4 6.6 - - - +
1027C LEU* 3.1 20.4 + - - +
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Residues in contact with ALA1024 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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935C VAL* 3.5 30.6 - - + +
938C MET* 4.2 16.6 - - + -
939C SER* 5.5 2.0 - - - -
957C VAL* 5.9 0.2 - - + -
997C LEU* 4.0 20.8 - - + +
1020C MET 2.8 17.0 + - - +
1021C LEU* 3.8 6.5 - - - +
1023C ALA* 1.3 71.3 - - - +
1025C HIS* 1.3 66.1 + - - +
1027C LEU* 3.3 9.3 - - - +
1028C ALA 3.1 17.5 + - - -
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Residues in contact with HIS1025 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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935C VAL* 4.5 6.0 - - - +
1021C LEU 3.0 14.1 + - - +
1022C THR* 3.1 11.2 + - - +
1024C ALA* 1.3 73.3 - - - +
1026C ALA* 1.3 68.2 + - - +
1028C ALA* 3.3 5.9 + - + +
1029C VAL* 2.9 46.8 + - + +
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Residues in contact with ALA1026 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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993C ASP* 3.7 15.3 - - - +
996C GLU* 5.4 4.3 - - - +
1022C THR* 3.1 13.4 + - + +
1023C ALA* 3.4 13.5 - - - +
1025C HIS* 1.3 78.2 + - - +
1027C LEU* 1.3 65.1 + - - +
1029C VAL* 3.0 8.0 + - - +
1030C ASP* 2.9 27.6 + - - +
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Residues in contact with LEU1027 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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931C LEU* 4.2 14.4 - - + -
935C VAL* 4.2 9.4 - - + -
957C VAL* 3.3 33.9 - - + +
961C LEU* 4.3 13.5 - - + -
990C LEU* 3.5 38.0 - - + +
993C ASP* 3.6 17.6 + - + -
994C LEU* 4.1 15.3 - - + +
997C LEU* 4.9 6.1 - - + -
1023C ALA 3.1 10.4 + - - +
1024C ALA* 3.3 10.1 - - - +
1026C ALA* 1.3 79.6 - - - +
1028C ALA* 1.3 51.6 + - - +
1030C ASP* 3.2 3.1 + - - +
1031C ALA* 2.8 34.8 + - - +
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Residues in contact with ALA1028 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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931C LEU* 5.5 2.0 - - - -
932C VAL* 4.1 28.2 - - + +
935C VAL* 4.2 17.4 - - + +
1024C ALA 3.1 10.1 + - - +
1025C HIS* 3.7 8.5 - - + +
1027C LEU* 1.3 76.3 - - - +
1029C VAL* 1.3 67.4 + - + +
1031C ALA* 3.1 8.7 + - - +
1032C LYS* 3.0 30.2 + - + +
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Residues in contact with VAL1029 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1025C HIS* 2.9 49.4 + - + +
1026C ALA* 3.5 9.0 - - - +
1028C ALA* 1.3 75.1 - - + +
1030C ASP* 1.3 63.2 + - - +
1032C LYS* 3.1 14.9 + - - +
1033C ASN* 3.1 37.5 + - - +
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Residues in contact with ASP1030 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1015B GLU* 5.0 4.2 - - - +
1019B GLN* 5.6 0.3 + - - -
986C ALA* 5.3 1.8 - - - +
989C LEU* 3.6 29.0 - - + +
990C LEU* 3.5 14.4 - - + +
993C ASP* 2.7 31.2 - - - +
1026C ALA* 2.9 13.7 + - - +
1027C LEU 3.6 2.0 - - - +
1029C VAL* 1.3 79.3 - - - +
1031C ALA* 1.3 64.2 + - - +
1032C LYS 3.1 1.8 - - - -
1033C ASN* 3.1 18.3 + - - +
1034C LEU* 3.0 20.4 + - - +
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Residues in contact with ALA1031 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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928C VAL* 3.5 26.4 - - + +
931C LEU* 3.6 29.6 - - + -
932C VAL* 4.6 2.5 - - + -
964C LEU* 4.5 4.7 - - + -
990C LEU* 3.4 13.9 - - + +
1027C LEU 2.8 16.9 + - - +
1028C ALA* 3.1 11.9 + - - +
1030C ASP* 1.3 72.1 - - - +
1032C LYS* 1.3 62.0 + - - +
1034C LEU* 3.4 11.3 + - - +
1035C LEU 3.4 8.8 + - - -
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Residues in contact with LYS1032 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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928C VAL* 4.2 17.7 - - + -
932C VAL* 4.2 19.1 - - + +
1028C ALA* 3.0 18.8 + - + +
1029C VAL* 3.3 14.1 - - - +
1030C ASP 3.1 0.2 - - - -
1031C ALA* 1.3 78.0 - - - +
1033C ASN* 1.3 61.2 + - - +
1035C LEU* 3.7 9.1 + - + +
1036C ASP* 3.2 22.7 + - - +
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Residues in contact with ASN1033 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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910C SER* 4.5 14.8 + - - -
986C ALA* 5.6 0.9 - - - -
1029C VAL* 3.1 26.2 + - - +
1030C ASP* 3.1 22.2 + - - +
1032C LYS* 1.3 82.6 + - - +
1034C LEU* 1.3 66.9 + - - +
1036C ASP* 3.2 6.6 + - + +
1037C VAL* 2.9 29.6 + - + +
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Residues in contact with LEU1034 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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924C VAL* 5.7 0.7 - - + -
928C VAL* 5.4 0.9 - - + -
964C LEU* 4.0 14.4 - - + -
965C LEU* 5.2 1.1 - - + -
968C VAL* 3.7 24.5 - - + -
983C ILE* 4.0 17.7 - - + +
986C ALA* 3.4 34.5 - - + +
987C GLN* 4.2 11.4 - - + +
990C LEU* 3.8 24.2 - - + -
1030C ASP 3.0 11.4 + - - +
1031C ALA* 3.5 9.6 - - - +
1033C ASN* 1.3 73.5 - - - +
1035C LEU* 1.3 68.0 + - - +
1037C VAL* 2.9 14.7 + - + +
1038C ILE* 3.0 29.8 + - + +
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Residues in contact with LEU1035 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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913C PRO* 4.6 11.2 - - + -
919C ARG* 3.9 8.1 - - - +
922C ASP* 5.2 0.7 - - - +
924C VAL* 4.2 26.0 - - + -
925C TYR* 3.6 34.8 - - + +
928C VAL* 4.0 20.6 - - + +
1031C ALA 3.4 9.6 + - - +
1032C LYS* 3.8 11.2 - - + +
1034C LEU* 1.3 78.8 - - - +
1036C ASP* 1.3 65.0 + - - +
1038C ILE* 3.4 3.3 + - + +
1039C ASP* 3.0 46.9 + - - +
1042C ARG* 4.9 1.6 - - - +
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Residues in contact with ASP1036 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
910C SER* 3.6 29.1 + - - +
911C PRO* 5.7 0.9 - - - +
1032C LYS 3.2 12.7 + - - +
1033C ASN* 3.4 13.0 + - - +
1034C LEU 3.1 0.4 - - - -
1035C LEU* 1.3 81.3 - - - +
1037C VAL* 1.3 62.6 + - - +
1039C ASP* 3.4 7.3 + - - +
1040C GLN* 3.1 36.6 + - - +
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Residues in contact with VAL1037 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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979C THR* 6.4 0.7 - - - -
982C GLU* 4.1 38.6 - - + +
983C ILE* 4.0 24.0 - - + +
986C ALA* 4.7 10.8 - - + -
1033C ASN* 2.9 23.4 + - + +
1034C LEU* 3.3 9.9 - - + +
1036C ASP* 1.3 73.9 - - + +
1038C ILE* 1.3 68.9 + - - +
1040C GLN* 2.9 28.9 + - - +
1041C ALA* 2.9 10.9 + - + +
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Residues in contact with ILE1038 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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924C VAL* 4.3 17.5 - - + -
968C VAL* 4.0 33.2 - - + -
971C THR* 5.1 4.5 - - + -
975C LEU* 4.8 10.3 - - + -
983C ILE* 3.8 23.6 - - + -
1034C LEU* 3.0 27.5 + - + +
1035C LEU* 3.7 4.3 - - + +
1037C VAL* 1.3 79.5 - - - +
1039C ASP* 1.3 63.7 + - - +
1041C ALA* 2.9 10.8 + - - +
1042C ARG* 2.9 54.7 + - + +
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Residues in contact with ASP1039 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
913C PRO* 4.4 4.0 - - - +
914C THR* 4.1 13.4 + - + +
917C LEU* 3.6 8.4 - - + +
919C ARG* 2.7 35.7 + - - -
1035C LEU* 3.0 30.8 + - - +
1036C ASP* 3.7 10.0 - - - +
1038C ILE* 1.3 74.5 - - - +
1040C GLN* 1.3 56.7 + - + +
1042C ARG* 2.7 52.7 + - - +
1043C LEU* 2.8 17.1 + - + +
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Residues in contact with GLN1040 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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982C GLU* 5.2 4.3 + - - +
1036C ASP* 3.1 41.0 + - - +
1037C VAL* 2.9 23.3 + - - +
1039C ASP* 1.3 77.6 - - + +
1041C ALA* 1.3 56.0 + - - +
1043C LEU* 3.6 13.2 - - + +
1044C LYS* 2.9 31.0 + - - +
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Residues in contact with ALA1041 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
975C LEU* 3.6 22.8 - - + +
976C PRO* 3.7 5.4 - - - +
979C THR* 3.9 26.0 - - - +
983C ILE* 4.2 10.1 - - + -
1037C VAL* 2.9 8.7 + - + +
1038C ILE* 2.9 19.9 + - - +
1039C ASP 2.9 0.2 - - - -
1040C GLN* 1.3 77.3 - - - +
1042C ARG* 1.3 60.7 + - - +
1044C LYS* 3.9 4.9 - - - +
1045C MET* 3.4 17.8 + - - +
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Residues in contact with ARG1042 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
917C LEU* 4.1 24.2 - - + +
919C ARG* 3.8 2.0 - - - +
922C ASP* 2.9 43.1 + - - +
924C VAL* 3.9 18.6 - - - +
971C THR* 4.5 11.3 - - - +
974C LEU* 6.4 0.7 - - + -
975C LEU* 3.7 17.8 - - + +
1035C LEU* 4.9 2.2 - - - +
1038C ILE* 2.9 33.6 + - - +
1039C ASP* 2.7 32.2 + - - +
1041C ALA* 1.3 71.4 - - - +
1043C LEU* 1.3 71.8 + - - +
1045C MET* 3.3 7.5 + - - +
1046C LEU* 3.1 26.8 + - + +
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Residues in contact with LEU1043 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
914C THR* 4.4 21.5 - - + +
916C ASN* 4.8 17.7 - - + +
917C LEU* 3.9 28.7 - - + -
1039C ASP* 2.8 18.2 + - + +
1040C GLN* 3.6 14.4 - - + +
1042C ARG* 1.3 76.1 - - - +
1044C LYS* 1.3 65.3 + - - +
1046C LEU* 2.9 19.1 + - + +
1047C GLY* 3.0 11.1 + - - -
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Residues in contact with LYS1044 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
976C PRO* 4.9 8.3 - - + -
978C SER* 3.6 20.9 + - - +
979C THR* 4.3 15.8 - - + +
1040C GLN 2.9 17.8 + - - +
1041C ALA* 3.9 7.6 - - - +
1043C LEU* 1.3 76.6 - - - +
1045C MET* 1.3 56.1 + - - +
1046C LEU 2.7 11.4 + - - -
1047C GLY 3.1 23.7 + - - +
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Residues in contact with MET1045 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
974C LEU* 3.3 44.0 - - + +
975C LEU* 4.3 7.6 - - - -
976C PRO* 3.6 29.0 - - + +
1041C ALA 3.4 9.9 + - - +
1042C ARG* 3.3 8.4 + - - +
1044C LYS* 1.3 78.8 - - - +
1046C LEU* 1.3 67.4 + - + +
1047C GLY 5.1 0.2 - - - -
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Residues in contact with LEU1046 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
916C ASN 5.5 3.6 - - - +
917C LEU* 4.5 19.7 - - + -
1042C ARG* 3.1 16.3 + - + +
1043C LEU* 2.9 13.8 + - + +
1044C LYS 2.7 4.6 + - - -
1045C MET* 1.3 83.4 - - + +
1047C GLY* 1.3 60.8 + - - +
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Residues in contact with GLY1047 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1043C LEU 3.0 9.2 + - - +
1044C LYS* 3.4 16.4 - - - +
1045C MET 5.1 0.4 - - - -
1046C LEU* 1.3 83.3 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il