Contacts of the helix formed by residues 685 - 714 (chain E) in PDB entry 1P3F


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLN 685 (chain E).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    684E  PHE*     1.3    77.2    -      -       -      +
    686E  SER*     1.3    68.2    +      -       -      +
    687E  SER*     3.7    13.9    +      -       -      +
    688E  ALA*     2.9    13.9    +      -       -      +
    689E  VAL      3.4     5.7    +      -       -      -
    280F  THR*     4.4     8.6    -      -       +      +
    281F  VAL      3.1    16.0    +      -       -      +
    282F  THR*     3.2    19.0    -      -       -      +
    283F  ALA*     2.7    30.1    +      -       -      +
    101I    C      5.8     1.0    +      -       -      -
    102I    A      5.3     6.3    +      -       -      -
    195J    C      6.0     2.0    -      -       -      -
    196J    C      3.4    27.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 686 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    668E  GLN*     5.3     7.6    -      -       -      +
    672E  ARG*     6.4     0.2    -      -       -      +
    684E  PHE      3.6     2.9    +      -       -      -
    685E  GLN*     1.3    73.0    -      -       -      +
    687E  SER*     1.3    62.4    +      -       -      +
    689E  VAL*     3.0    22.0    +      -       -      +
    690E  MET*     3.0    18.8    +      -       -      +
    196J    C      3.1    15.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 687 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    685E  GLN*     3.7    14.6    +      -       -      +
    686E  SER*     1.3    77.9    +      -       -      +
    688E  ALA*     1.3    62.7    +      -       -      +
    690E  MET*     3.6     8.7    -      -       -      -
    691E  ALA*     2.8    29.1    +      -       -      +
    283F  ALA*     3.5    18.7    -      -       -      +
    300F  PHE*     3.5    17.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 688 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    684E  PHE*     4.2    10.3    -      -       +      -
    685E  GLN      2.9    11.0    +      -       -      +
    687E  SER*     1.3    78.0    +      -       -      +
    689E  VAL*     1.3    67.3    +      -       -      +
    691E  ALA*     3.8     2.9    -      -       -      +
    692E  LEU*     3.1    31.0    +      -       -      +
    281F  VAL      3.7    10.3    -      -       -      +
    282F  THR      3.6    27.6    -      -       -      +
    283F  ALA*     3.7    10.8    -      -       -      +
    286F  VAL*     4.2     7.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 689 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    664E  LYS      5.7     0.4    -      -       -      +
    667E  PHE*     3.9    14.8    -      -       +      -
    668E  GLN*     3.5    54.3    -      -       +      +
    671E  VAL*     4.3     9.4    -      -       +      -
    672E  ARG*     4.7     0.9    -      -       -      +
    684E  PHE*     4.1    21.8    -      -       +      -
    685E  GLN      4.0     7.2    -      -       -      +
    686E  SER*     3.0    10.7    +      -       -      +
    688E  ALA*     1.3    78.9    -      -       -      +
    690E  MET*     1.3    61.5    +      -       +      +
    692E  LEU*     3.4     8.1    +      -       -      +
    693E  GLN*     3.0    27.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 690 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    660E  LEU*     4.0    12.3    -      -       +      -
    664E  LYS*     3.0    38.6    -      -       -      +
    686E  SER*     3.0    19.8    +      -       -      +
    687E  SER*     3.7     8.7    -      -       -      +
    689E  VAL*     1.3    81.9    -      -       +      +
    691E  ALA*     1.3    56.6    +      -       -      +
    693E  GLN*     3.3    15.3    +      -       -      +
    694E  GLU*     3.0    37.2    +      -       +      +
    300F  PHE*     3.8    16.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 691 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    687E  SER      2.8    17.4    +      -       -      +
    688E  ALA*     3.8     2.2    -      -       -      +
    689E  VAL      3.3     0.2    -      -       -      -
    690E  MET*     1.3    73.2    -      -       -      +
    692E  LEU*     1.3    67.3    +      -       -      +
    694E  GLU      3.2     0.2    +      -       -      -
    695E  ALA*     2.9    25.3    +      -       -      +
    283F  ALA*     5.1     1.6    -      -       +      -
    286F  VAL*     3.8    21.3    -      -       +      -
    287F  VAL*     4.9     2.5    -      -       +      -
    297F  LEU*     3.6    26.9    -      -       +      +
    300F  PHE*     3.7    18.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 692 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    667E  PHE*     3.8    10.5    -      -       +      -
    671E  VAL*     3.7    31.6    -      -       +      -
    684E  PHE*     4.3    10.8    -      -       +      -
    688E  ALA      3.1    20.9    +      -       -      +
    689E  VAL*     3.5     9.6    -      -       -      +
    691E  ALA*     1.3    76.8    -      -       -      +
    693E  GLN*     1.3    57.2    +      -       -      +
    695E  ALA*     3.2     6.4    +      -       -      +
    696E  SER*     2.8    35.9    +      -       -      -
    261F  PHE*     4.9     0.8    -      -       +      -
    262F  LEU*     4.7     7.4    -      -       +      -
    265F  VAL*     4.0    23.3    -      -       +      -
    266F  ILE*     4.0    21.5    -      -       +      -
    286F  VAL*     3.8    26.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 693 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    660E  LEU*     3.8    22.6    -      -       +      +
    662E  ILE*     3.0    35.6    +      -       -      +
    663E  ARG      4.0     6.5    +      -       -      -
    664E  LYS*     4.0    11.8    +      -       -      +
    667E  PHE*     3.4    37.7    -      -       +      +
    689E  VAL*     3.0    14.2    +      -       -      +
    690E  MET*     3.7    18.5    -      -       -      +
    692E  LEU*     1.3    79.5    -      -       -      +
    694E  GLU*     1.3    60.9    +      -       -      +
    696E  SER*     3.9     0.4    -      -       -      -
    697E  GLU*     3.2    41.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 694 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    901C  THR*     4.6     2.1    -      -       -      +
    903C  ALA*     3.4     7.5    -      -       +      -
    904C  GLN*     2.8    58.2    +      -       -      +
    660E  LEU*     3.7    24.3    -      -       +      +
    690E  MET*     3.0    26.0    +      -       +      +
    691E  ALA      3.2     3.1    +      -       -      +
    693E  GLN*     1.3    76.7    -      -       -      +
    695E  ALA*     1.3    63.9    +      -       -      +
    697E  GLU*     4.1     1.0    -      -       -      +
    698E  ALA*     3.1    24.6    +      -       -      +
    297F  LEU*     4.5    11.2    -      -       +      -
    300F  PHE*     3.9    22.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 695 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    901C  THR*     5.3     3.3    +      -       -      -
    691E  ALA      2.9    17.7    +      -       -      +
    692E  LEU*     3.4     6.3    -      -       -      +
    694E  GLU*     1.3    81.9    -      -       -      +
    696E  SER*     1.3    57.2    +      -       -      +
    698E  ALA*     3.5     5.1    +      -       -      +
    699E  TYR*     3.0    26.2    +      -       -      +
    261F  PHE*     3.9     7.9    -      -       +      -
    290F  LEU*     3.7    37.2    -      -       +      -
    295F  ARG*     4.3     5.8    +      -       +      +
    297F  LEU*     4.8     6.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 696 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    662E  ILE*     5.6     0.7    -      -       -      -
    667E  PHE*     3.7    11.6    -      -       -      -
    692E  LEU      2.8    22.6    +      -       -      -
    693E  GLN      3.9     3.8    -      -       -      -
    695E  ALA*     1.3    73.2    -      -       -      +
    697E  GLU*     1.3    57.8    +      -       -      +
    698E  ALA      3.1     1.1    -      -       -      -
    699E  TYR*     3.2     1.4    +      -       -      +
    700E  LEU*     2.7    40.8    +      -       -      +
    258F  LEU*     3.9    18.8    -      -       -      -
    261F  PHE*     3.6    14.9    -      -       -      -
    262F  LEU*     3.4    26.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 697 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    659E  GLU      4.4     0.3    -      -       -      +
    660E  LEU*     3.3    22.9    -      -       +      +
    661E  LEU*     2.6    35.1    +      -       -      +
    662E  ILE*     2.7    52.4    +      -       +      +
    693E  GLN*     3.2    25.2    +      -       +      +
    694E  GLU      4.4     0.7    -      -       -      +
    696E  SER*     1.3    79.1    -      -       -      +
    698E  ALA*     1.3    59.2    +      -       -      +
    700E  LEU*     4.3     5.6    -      -       -      -
    701E  VAL*     2.8    36.4    +      -       +      +
    237F  LEU*     3.9    12.0    -      -       +      +
    240F  ARG*     4.5     3.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 698 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    901C  THR*     3.7    28.9    -      -       +      +
    694E  GLU      3.1    19.5    +      -       -      +
    695E  ALA      3.8     3.8    -      -       -      +
    697E  GLU*     1.3    80.2    -      -       -      +
    699E  TYR*     1.3    58.8    +      -       -      +
    701E  VAL*     4.4     3.7    -      -       -      +
    702E  ALA*     3.3    22.5    +      -       -      +
    295F  ARG*     3.8     5.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 699 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    695E  ALA      3.0    16.5    +      -       -      +
    696E  SER      3.5     4.5    -      -       -      +
    697E  GLU      3.1     0.2    -      -       -      -
    698E  ALA*     1.3    76.5    -      -       -      +
    700E  LEU*     1.3    80.2    +      -       +      +
    701E  VAL      3.2     0.2    -      -       -      -
    702E  ALA*     3.2     3.4    +      -       -      +
    703E  LEU*     2.8    31.1    +      -       +      +
    728E  ARG*     3.6    17.5    +      -       -      -
    731E  ARG*     3.4    23.4    +      -       -      -
    733E  GLU*     2.5    31.3    +      -       -      -
    257F  VAL*     3.9    22.7    -      -       +      +
    258F  LEU*     5.9     0.2    -      -       +      -
    261F  PHE*     3.6    47.1    -      +       +      -
    295F  ARG*     3.4    30.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 700 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    662E  ILE*     4.6     4.3    -      -       +      -
    696E  SER      2.7    21.6    +      -       -      +
    697E  GLU*     3.9     3.8    -      -       -      +
    699E  TYR*     1.3    89.4    -      -       +      +
    701E  VAL*     1.3    62.7    +      -       -      +
    703E  LEU*     3.0    16.0    +      -       +      +
    704E  PHE*     3.0    24.4    +      -       +      -
    229F  ILE*     5.9     1.8    -      -       +      -
    234F  ILE*     6.4     0.2    -      -       +      -
    237F  LEU*     3.6    29.4    -      -       +      -
    254F  THR*     4.2    25.6    -      -       +      -
    257F  VAL*     4.1    21.3    -      -       +      -
    258F  LEU*     3.9    35.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 701 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    907C  VAL*     3.9    18.4    -      -       +      -
    697E  GLU*     2.8    25.7    +      -       +      +
    698E  ALA*     4.4     3.8    -      -       -      +
    700E  LEU*     1.3    73.0    -      -       -      +
    702E  ALA*     1.3    63.0    +      -       -      +
    703E  LEU      3.2     0.7    +      -       -      -
    704E  PHE*     3.3     5.1    +      -       -      +
    705E  GLU*     3.2    24.1    +      -       -      +
    237F  LEU*     3.3    42.6    -      -       +      +
    240F  ARG*     3.8    24.5    -      -       +      -
    241F  GLY*     3.8    22.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 702 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    698E  ALA      3.3    18.5    +      -       -      +
    699E  TYR*     3.2     6.2    +      -       -      +
    701E  VAL*     1.3    80.7    -      -       -      +
    703E  LEU*     1.3    61.0    +      -       -      +
    705E  GLU*     3.6    20.5    -      -       -      +
    706E  ASP*     3.5    15.4    +      -       -      +
    731E  ARG*     3.2    16.7    +      -       -      +
    295F  ARG*     5.1     6.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 703 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    699E  TYR*     2.8    24.8    +      -       +      +
    700E  LEU*     3.3    11.2    -      -       +      +
    701E  VAL      3.0     0.2    -      -       -      -
    702E  ALA*     1.3    77.2    -      -       -      +
    704E  PHE*     1.3    69.7    +      -       +      +
    706E  ASP*     2.9    12.8    +      -       -      +
    707E  THR*     2.9    20.7    +      -       -      +
    724E  ILE*     4.0    23.8    -      -       +      +
    727E  ALA*     4.3     8.5    -      -       +      -
    728E  ARG*     4.1    19.5    -      -       +      -
    731E  ARG*     3.4    34.1    -      -       -      +
    254F  THR*     6.4     0.4    -      -       +      -
    257F  VAL*     3.9    27.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 704 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    700E  LEU*     3.0    27.8    +      -       +      -
    701E  VAL      3.7     6.1    -      -       -      +
    703E  LEU*     1.3    74.8    -      -       +      +
    705E  GLU*     1.3    55.3    +      -       -      +
    707E  THR*     3.4     9.4    -      -       -      -
    708E  ASN*     2.6    37.9    +      -       -      +
    719E  ILE*     3.9    29.4    -      -       +      -
    724E  ILE*     4.3     8.3    -      -       +      -
    234F  ILE*     3.7    31.2    -      -       +      -
    237F  LEU*     3.7    13.9    -      -       +      -
    238F  ALA*     3.5    35.2    -      -       +      -
    241F  GLY*     4.3     4.5    -      -       -      -
    243F  VAL*     4.0    11.0    -      -       +      +
    250F  ILE*     4.1    11.0    -      -       +      -
    254F  THR*     3.9    19.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 705 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    529A  ARG*     4.9    13.2    +      -       -      +
    907C  VAL*     4.5    11.6    -      -       -      +
    701E  VAL*     3.2    26.3    +      -       -      +
    702E  ALA*     3.6    20.1    -      -       -      +
    704E  PHE*     1.3    73.8    -      -       -      +
    706E  ASP*     1.3    70.4    +      -       -      +
    708E  ASN*     3.0     6.6    +      -       -      +
    709E  LEU*     2.8    28.2    +      -       +      +
    240F  ARG      4.8     0.9    -      -       -      +
    241F  GLY*     3.7    22.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 706 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    529A  ARG*     3.4    24.6    +      -       -      -
    530A  ILE*     4.1    24.1    -      -       +      +
    702E  ALA      3.7     7.7    -      -       -      +
    703E  LEU      2.9     8.5    +      -       -      +
    705E  GLU*     1.3    85.7    -      -       -      +
    707E  THR*     1.3    51.2    +      -       -      +
    709E  LEU*     3.1     9.2    +      -       -      +
    710E  CYS*     2.7    37.1    +      -       -      -
    727E  ALA*     3.9    18.8    -      -       +      -
    731E  ARG*     2.9    32.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 707 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    703E  LEU*     2.9    21.4    +      -       -      +
    704E  PHE*     3.4    12.2    -      -       -      -
    706E  ASP*     1.3    72.9    -      -       -      +
    708E  ASN*     1.3    60.7    +      -       -      +
    710E  CYS*     3.0     8.9    +      -       -      +
    711E  ALA*     2.9    27.5    +      -       -      +
    719E  ILE*     3.8    21.1    -      -       +      -
    723E  ASP*     3.4    24.1    -      -       +      +
    724E  ILE*     3.4    40.5    -      -       +      +
    727E  ALA*     4.3     0.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 708 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    912C  GLN*     4.2    13.1    -      -       -      +
    915C  LEU*     4.1    12.8    -      -       -      +
    704E  PHE      2.6    21.7    +      -       -      +
    705E  GLU*     3.3     6.9    -      -       -      +
    707E  THR*     1.3    72.6    -      -       -      +
    709E  LEU*     1.3    60.6    +      -       +      +
    711E  ALA*     3.6     1.9    +      -       -      +
    712E  ILE*     3.0    41.6    +      -       -      +
    717E  VAL      4.9     6.8    -      -       -      +
    719E  ILE*     3.8    15.6    -      -       -      +
    241F  GLY      4.3     2.2    +      -       -      -
    242F  GLY*     2.9    32.7    +      -       -      -
    243F  VAL*     3.8    17.4    -      -       +      +
    244F  LYS      5.0     0.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 709 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    526A  LEU*     4.3    20.7    -      -       +      +
    529A  ARG*     3.2    46.0    -      -       +      +
    530A  ILE*     5.1     1.8    -      -       +      -
    912C  GLN*     3.7    31.4    -      -       +      +
    705E  GLU*     2.8    16.9    +      -       +      +
    706E  ASP*     3.3    12.3    -      -       -      +
    707E  THR      3.1     0.2    -      -       -      -
    708E  ASN*     1.3    79.2    -      -       +      +
    710E  CYS*     1.3    64.7    +      -       -      +
    712E  ILE*     3.5     9.9    +      -       +      +
    713E  HIS*     3.1    20.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 710 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    513A  HIS*     3.2    17.3    +      -       +      +
    526A  LEU*     4.6     5.6    -      -       -      -
    530A  ILE*     3.6    22.4    -      -       -      -
    706E  ASP      2.7    20.8    +      -       -      +
    707E  THR      3.0     8.0    +      -       -      +
    709E  LEU*     1.3    71.2    -      -       -      +
    711E  ALA*     1.3    67.3    +      -       -      +
    713E  HIS*     3.0    21.0    +      -       -      +
    714E  ALA      3.3     0.9    +      -       -      -
    723E  ASP*     3.4    19.5    -      -       +      +
    726E  LEU*     4.0    17.7    -      -       -      -
    727E  ALA*     3.9    22.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 711 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    707E  THR      2.9    13.0    +      -       -      +
    708E  ASN*     3.8     7.6    -      -       -      +
    709E  LEU      3.4     0.2    -      -       -      -
    710E  CYS*     1.3    70.1    -      -       -      +
    712E  ILE*     1.3    56.6    +      -       +      +
    714E  ALA*     2.6    31.4    +      -       -      +
    716E  ARG*     3.2    31.7    +      -       -      +
    717E  VAL      4.9     1.3    -      -       -      -
    718E  THR      4.1    11.0    -      -       -      +
    719E  ILE*     4.1     9.0    -      -       +      +
    723E  ASP*     3.1    27.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 712 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    912C  GLN*     3.8    37.5    -      -       +      +
    914C  VAL*     4.0    32.8    -      -       +      -
    915C  LEU*     4.8     3.1    -      -       +      -
    708E  ASN*     3.0    30.1    -      -       -      +
    709E  LEU*     3.6    10.8    -      -       +      +
    711E  ALA*     1.3    74.8    -      -       +      +
    713E  HIS*     1.3    62.7    +      -       -      +
    715E  LYS*     2.8    15.1    +      -       -      +
    716E  ARG      3.4    17.5    -      -       -      +
    717E  VAL*     5.1     2.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 713 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    510A  CYS*     2.8    33.0    +      -       +      +
    513A  HIS*     4.3    10.1    -      +       -      -
    514A  ALA*     3.8    14.3    -      -       +      +
    516A  ARG*     3.7    11.9    +      -       -      -
    522A  LYS*     4.1    20.2    +      -       +      +
    523A  ASP*     3.0    32.5    +      -       -      -
    526A  LEU*     3.4    30.2    -      -       +      +
    709E  LEU      3.1    12.4    +      -       -      +
    710E  CYS      3.0    12.3    +      -       -      +
    711E  ALA      3.0     1.0    +      -       -      -
    712E  ILE*     1.3    77.1    -      -       -      +
    714E  ALA*     1.3    55.5    +      -       -      +
    715E  LYS*     3.1     9.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 714 (chain E). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    513A  HIS*     4.0    19.3    -      -       +      +
    514A  ALA*     4.4    10.8    -      -       -      +
    710E  CYS      3.9     6.5    -      -       -      +
    711E  ALA      2.6    10.4    +      -       -      +
    713E  HIS*     1.3    76.8    -      -       -      +
    715E  LYS*     1.3    73.8    +      -       -      +
    716E  ARG*     3.2    33.6    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il