Contacts of the helix formed by residues 325 - 353 (chain A) in PDB entry 1PRH


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 325 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    245A  ARG*     3.1    23.2    +      -       -      -
    247A  PHE*     3.2    38.6    +      -       -      +
    248A  LYS*     3.1    13.6    +      -       -      +
    249A  ASP      4.5     4.0    -      -       -      +
    250A  GLY*     2.9    38.3    +      -       -      +
    251A  LYS      4.5     0.2    -      -       -      +
    324A  GLY*     1.3    67.8    -      -       -      -
    326A  GLU*     1.3    67.6    +      -       -      +
    328A  LEU*     3.1     3.0    +      -       -      -
    329A  PHE*     2.9    20.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 326 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    242A  TYR*     4.3    14.5    +      -       -      -
    245A  ARG*     3.1    34.3    +      -       -      +
    247A  PHE*     4.9     2.4    -      -       -      -
    324A  GLY      3.7     0.6    -      -       -      -
    325A  ASP*     1.3    78.8    +      -       -      +
    327A  GLN*     1.3    58.8    +      -       -      +
    329A  PHE*     3.2     1.7    +      -       -      +
    330A  GLN*     2.9    41.4    +      -       +      +
    133B  ALA      5.8     0.4    -      -       -      +
    134B  HIS*     3.2    26.8    +      -       +      -
    136B  TYR*     3.4    15.7    -      -       -      +
    140B  GLU*     5.4     1.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 327 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    323A  TRP*     3.3    70.8    +      -       +      +
    324A  GLY      3.6     1.8    +      -       -      -
    325A  ASP      3.2     0.4    -      -       -      -
    326A  GLU*     1.3    77.8    -      -       -      +
    328A  LEU*     1.3    56.2    +      -       -      +
    330A  GLN*     4.2     0.2    -      -       -      +
    331A  THR*     2.7    46.8    +      -       -      +
    135B  ASP      5.1     0.6    +      -       -      -
    136B  TYR*     3.4    58.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 328 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    249A  ASP*     3.6    35.9    -      -       -      +
    250A  GLY*     4.0     1.8    -      -       -      -
    313A  CYS*     4.0     7.9    -      -       -      +
    316A  LEU*     3.7    14.5    -      -       +      +
    317A  LYS*     3.6    46.0    -      -       +      +
    323A  TRP*     3.5    26.0    -      -       +      -
    324A  GLY      3.2    27.3    +      -       -      +
    325A  ASP      3.1     6.1    +      -       -      +
    327A  GLN*     1.3    77.4    -      -       -      +
    329A  PHE*     1.3    57.0    +      -       -      +
    331A  THR*     3.3     2.2    +      -       -      -
    332A  ALA*     2.8    31.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 329 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    234A  TYR*     3.6    37.9    -      +       -      -
    241A  GLN*     3.4    41.7    -      -       +      -
    245A  ARG*     3.4    44.4    -      -       +      +
    250A  GLY*     3.4    25.4    -      -       -      +
    252A  LEU*     4.0     3.8    -      -       +      -
    309A  HIS*     3.7     5.3    +      +       -      -
    325A  ASP      2.9     8.3    +      -       -      +
    326A  GLU      3.3     7.0    -      -       -      +
    328A  LEU*     1.3    74.9    -      -       -      +
    330A  GLN*     1.3    84.8    +      -       +      +
    332A  ALA*     3.0     6.8    +      -       -      +
    333A  LYS*     3.0    27.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 330 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    241A  GLN*     4.2     3.2    +      -       -      -
    245A  ARG*     4.9     0.4    -      -       -      +
    326A  GLU*     2.9    39.7    +      -       -      +
    329A  PHE*     1.3    97.8    -      -       +      +
    331A  THR*     1.3    62.4    +      -       -      +
    333A  LYS*     3.1    10.9    +      -       -      +
    334A  LEU*     3.1    29.3    +      -       -      +
    134B  HIS*     4.1     7.2    -      -       +      -
    136B  TYR*     3.9    11.0    -      -       +      -
    137B  ILE      5.5     0.2    -      -       -      -
    138B  SER*     3.4    35.1    -      -       -      -
    139B  TRP*     3.4    14.6    +      -       -      +
    140B  GLU*     3.7    26.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 331 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    316A  LEU*     3.8    18.4    -      -       +      -
    323A  TRP*     4.2     5.9    +      -       -      +
    327A  GLN*     2.7    41.3    +      -       -      +
    328A  LEU*     3.9     3.1    -      -       -      -
    330A  GLN*     1.3    71.5    -      -       -      +
    332A  ALA*     1.3    61.4    -      -       -      +
    334A  LEU*     3.3    11.1    +      -       -      +
    335A  ILE*     3.1    20.4    +      -       -      +
    548A  SER      5.5     0.2    -      -       -      +
    549A  THR      3.7     9.8    +      -       -      +
    550A  PHE      3.3    34.8    -      -       -      +
    551A  GLY*     4.0     4.7    -      -       -      +
    136B  TYR*     5.0     3.5    -      -       -      +
    137B  ILE      5.6     1.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 332 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    234A  TYR*     4.4     0.7    -      -       -      -
    309A  HIS*     3.4    24.0    -      -       +      +
    312A  VAL*     4.3    14.4    -      -       +      -
    313A  CYS*     4.1    12.8    -      -       -      +
    316A  LEU*     4.2     1.5    -      -       +      +
    328A  LEU      2.8    14.9    +      -       -      +
    329A  PHE      3.0     9.4    +      -       -      +
    331A  THR*     1.3    73.9    -      -       -      +
    333A  LYS*     1.3    66.1    +      -       -      +
    335A  ILE*     2.9    10.2    +      -       -      +
    336A  LEU*     2.9    28.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 333 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    229A  ASP*     4.9     2.9    +      -       -      +
    230A  LEU      4.1    18.8    -      -       -      +
    231A  GLY*     5.0     0.6    -      -       -      +
    234A  TYR*     3.6    61.6    +      -       +      +
    235A  GLY      4.9     6.3    +      -       -      -
    241A  GLN*     5.1     8.3    +      -       -      +
    329A  PHE*     3.0    19.8    +      -       +      +
    330A  GLN*     3.1    19.0    +      -       -      +
    332A  ALA*     1.3    73.4    -      -       -      +
    334A  LEU*     1.3    59.7    +      -       +      +
    336A  LEU*     3.4     1.4    +      -       -      +
    337A  ILE*     2.9    44.8    +      -       +      +
    139B  TRP*     4.1    35.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 334 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    330A  GLN      3.1    18.2    +      -       -      +
    331A  THR*     3.5    10.5    -      -       -      +
    333A  LYS*     1.3    79.4    -      -       +      +
    335A  ILE*     1.3    61.2    +      -       -      +
    337A  ILE*     3.3     9.0    +      -       +      +
    338A  GLY      3.0    17.3    +      -       -      -
    539A  ILE*     4.1    22.7    -      -       +      +
    549A  THR*     3.4    38.6    -      -       +      +
    550A  PHE*     3.3    19.7    -      -       +      -
    137B  ILE*     3.5    22.4    -      -       +      +
    138B  SER*     4.0     2.2    -      -       -      +
    139B  TRP*     3.5    35.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 335 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    312A  VAL*     3.6    26.2    -      -       +      -
    316A  LEU*     4.5     2.5    -      -       +      -
    331A  THR*     3.1    15.9    +      -       +      +
    332A  ALA*     2.9     8.5    +      -       -      +
    334A  LEU*     1.3    71.4    -      -       -      +
    336A  LEU*     1.3    60.6    +      -       +      +
    338A  GLY      3.0     3.3    +      -       -      -
    339A  GLU*     2.8    34.2    +      -       +      +
    550A  PHE*     3.2    42.8    -      -       +      +
    555A  GLY*     3.5    16.8    -      -       -      -
    558A  LEU*     3.8    26.9    -      -       +      -
    559A  VAL*     3.3    20.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 336 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    230A  LEU*     3.7    16.6    -      -       +      -
    233A  ILE*     4.7     4.5    -      -       +      -
    234A  TYR*     3.5    19.1    -      -       +      +
    305A  TRP*     3.9    38.1    -      -       +      +
    308A  GLU*     4.3     2.9    -      -       +      +
    309A  HIS*     3.9    18.4    -      -       +      +
    312A  VAL*     4.0    23.6    -      -       +      -
    332A  ALA      2.9    22.0    +      -       -      +
    333A  LYS      3.9     1.8    -      -       -      +
    335A  ILE*     1.3    74.4    -      -       +      +
    337A  ILE*     1.3    64.3    +      -       -      +
    339A  GLU*     3.2    21.6    +      -       -      +
    340A  THR*     2.8    28.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 337 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    228A  VAL*     3.7    26.5    -      -       +      +
    230A  LEU*     3.7    26.7    -      -       +      +
    333A  LYS*     2.9    41.2    +      -       +      +
    334A  LEU*     3.6    10.1    -      -       +      +
    336A  LEU*     1.3    76.5    -      -       -      +
    338A  GLY*     1.3    63.7    +      -       -      +
    340A  THR*     3.1     3.7    +      -       -      -
    341A  ILE*     3.0    24.9    +      -       +      +
    537A  ASN*     3.9    21.5    -      -       -      +
    539A  ILE*     5.0    12.1    -      -       +      -
    139B  TRP*     4.1    27.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 338 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    334A  LEU      3.0     8.7    +      -       -      -
    335A  ILE      3.0     8.0    +      -       -      -
    337A  ILE*     1.3    75.6    -      -       -      +
    339A  GLU*     1.3    61.0    +      -       -      +
    341A  ILE*     3.2    12.1    -      -       -      +
    342A  LYS*     3.1    22.9    +      -       -      +
    361A  PHE*     4.2     4.6    -      -       -      -
    539A  ILE*     4.9     8.0    -      -       -      +
    545A  TRP*     6.3     0.4    -      -       -      -
    550A  PHE*     4.9     3.8    -      -       -      -
    559A  VAL*     3.7    23.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 339 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    305A  TRP*     4.2    11.0    -      -       +      -
    308A  GLU*     2.9    39.2    -      -       -      +
    311A  ARG*     4.5     4.9    +      -       -      -
    335A  ILE*     2.8    21.6    +      -       +      +
    336A  LEU*     3.4    24.4    -      -       -      +
    337A  ILE      3.2     0.2    -      -       -      -
    338A  GLY*     1.3    73.2    -      -       -      +
    340A  THR*     1.3    66.1    +      -       -      +
    342A  LYS*     2.9    14.4    +      -       -      +
    343A  ILE*     3.0    18.1    +      -       +      +
    558A  LEU*     4.0    15.4    -      -       -      +
    559A  VAL*     4.1     4.0    -      -       -      +
    562A  ALA*     3.7    29.0    -      -       +      +
    567A  LEU*     5.4     3.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 340 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201A  PHE*     5.0     4.0    -      -       +      -
    205A  PHE*     4.1    30.1    -      -       +      -
    208A  GLN*     4.8     0.4    -      -       -      +
    228A  VAL*     4.1    11.7    -      -       +      -
    230A  LEU*     3.9    20.2    -      -       +      +
    232A  HIS*     5.5     3.1    -      -       +      +
    305A  TRP*     3.2    30.6    -      -       +      -
    336A  LEU      2.8    17.2    +      -       -      -
    337A  ILE*     3.5     7.0    -      -       -      -
    339A  GLU*     1.3    71.4    -      -       -      +
    341A  ILE*     1.3    58.0    +      -       -      +
    343A  ILE*     3.5     4.4    +      -       -      +
    344A  VAL*     3.0    34.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 341 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    205A  PHE*     6.1     0.2    -      -       -      -
    228A  VAL*     4.9    11.9    -      -       +      -
    337A  ILE*     3.0    19.7    +      -       +      +
    338A  GLY*     3.2    19.1    -      -       -      +
    340A  THR*     1.3    77.3    -      -       -      +
    342A  LYS*     1.3    60.8    +      -       -      +
    344A  VAL*     4.1     5.4    -      -       -      +
    345A  ILE*     3.5    31.4    +      -       +      +
    361A  PHE*     3.4    37.1    -      -       +      -
    534A  LEU*     3.6    44.9    -      -       +      +
    535A  LEU*     5.1     0.2    -      -       +      -
    537A  ASN*     5.3     4.9    -      -       +      +
    539A  ILE*     5.1     6.7    -      -       +      -
    540A  CYS*     4.8     1.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 342 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    338A  GLY      3.1    12.1    +      -       -      +
    339A  GLU      2.9     8.7    +      -       -      +
    341A  ILE*     1.3    75.7    -      -       -      +
    343A  ILE*     1.3    61.0    +      -       -      +
    345A  ILE*     3.0     2.8    +      -       -      +
    346A  GLU*     2.8    68.6    +      -       +      +
    361A  PHE*     3.8    27.5    +      -       +      -
    559A  VAL      3.4    20.4    -      -       -      +
    560A  LYS*     3.3    24.7    +      -       -      +
    561A  THR*     4.2     2.7    -      -       -      +
    562A  ALA*     3.4    27.1    -      -       +      +
    563A  THR*     5.5     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 343 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201A  PHE*     4.0    25.4    -      -       +      -
    305A  TRP*     4.5     9.0    -      -       +      -
    339A  GLU*     3.0    14.9    +      -       +      +
    340A  THR*     3.8     4.5    -      -       -      +
    342A  LYS*     1.3    78.3    -      -       -      +
    344A  VAL*     1.3    62.3    +      -       -      +
    346A  GLU*     5.4     0.7    -      -       -      -
    347A  GLU*     3.0    40.6    +      -       -      +
    348A  TYR      3.0     8.7    +      -       -      -
    562A  ALA*     4.2    17.7    -      -       +      -
    563A  THR      3.8    24.0    -      -       -      +
    564A  LEU*     3.8    10.3    -      -       +      +
    567A  LEU*     4.1    21.3    -      -       +      -
    580A  PHE*     4.5    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 344 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201A  PHE*     3.9    21.8    -      -       +      -
    205A  PHE*     3.7    38.1    -      -       +      -
    340A  THR      3.0    21.9    +      -       -      +
    341A  ILE*     4.1     7.6    -      -       -      +
    343A  ILE*     1.3    77.7    -      -       -      +
    345A  ILE*     1.3    58.8    +      -       -      +
    348A  TYR*     3.8    14.6    -      -       +      -
    349A  VAL*     2.8    40.5    +      -       +      +
    530A  SER*     6.0     1.1    -      -       -      +
    534A  LEU*     3.6    25.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 345 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    113A  MET*     4.5     9.2    -      -       +      -
    341A  ILE*     3.5    22.5    +      -       +      +
    342A  LYS      3.0     3.9    +      -       -      +
    344A  VAL*     1.3    79.3    -      -       -      +
    346A  GLU*     1.3    65.5    +      -       +      +
    347A  GLU      3.4     0.2    +      -       -      -
    349A  VAL*     3.7     9.9    -      -       +      +
    350A  GLN      3.6    13.5    +      -       -      -
    359A  LEU*     3.8    15.5    -      -       +      +
    360A  LYS      3.8    33.4    -      -       -      +
    361A  PHE*     3.6    31.6    -      -       +      +
    531A  LEU*     4.9     7.9    -      -       +      -
    534A  LEU*     3.6    23.8    -      -       +      -
    535A  LEU*     4.0    18.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 346 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    109A  ARG*     3.8    12.7    +      -       -      -
    342A  LYS*     2.8    56.5    +      -       +      +
    343A  ILE*     5.4     0.7    -      -       -      -
    345A  ILE*     1.3    73.0    -      -       +      +
    347A  GLU*     1.3    64.6    +      -       +      +
    350A  GLN*     3.2    21.2    -      -       -      +
    359A  LEU*     3.7    15.2    -      -       -      +
    360A  LYS*     3.6    14.4    -      -       -      +
    361A  PHE*     3.1    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 347 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    343A  ILE*     3.0    22.6    +      -       -      +
    345A  ILE      3.4     0.4    -      -       -      -
    346A  GLU*     1.3    84.8    -      -       +      +
    348A  TYR*     1.3    58.4    +      -       -      +
    349A  VAL      3.5     0.4    -      -       -      -
    350A  GLN*     3.3     1.7    +      -       -      +
    351A  GLN*     2.8    30.1    +      -       -      +
    562A  ALA      4.7     0.7    -      -       -      +
    563A  THR*     3.6    19.6    -      -       -      +
    564A  LEU*     2.9    42.5    +      -       -      +
    565A  LYS*     4.6     1.0    +      -       -      +
    580A  PHE*     3.9    16.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with TYR 348 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    198A  PHE*     3.5    33.5    -      +       -      -
    201A  PHE*     3.3    24.5    -      +       +      -
    202A  ALA*     3.2    43.8    +      -       +      +
    205A  PHE*     4.4     8.9    -      +       -      -
    343A  ILE      3.0     8.9    +      -       -      +
    344A  VAL*     3.4    24.5    -      -       +      +
    347A  GLU*     1.3    69.8    -      -       -      +
    349A  VAL*     1.3    75.4    +      -       +      +
    351A  GLN*     3.0    19.1    +      -       -      +
    352A  LEU*     3.1    19.2    +      -       +      +
    385A  TYR*     2.9    35.1    +      -       -      -
    387A  TRP*     4.5     1.7    -      -       -      -
    530A  SER*     6.1     0.2    -      -       -      -
    580A  PHE*     3.5    18.3    -      +       +      -
----------------------------------------------------------
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Residues in contact with VAL 349 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    344A  VAL*     2.8    32.7    +      -       +      +
    345A  ILE*     3.7     9.2    -      -       +      +
    348A  TYR*     1.3    83.4    -      -       +      +
    350A  GLN*     1.3    60.7    +      -       -      +
    352A  LEU*     4.0    15.5    -      -       +      -
    353A  SER*     2.8    36.1    +      -       -      +
    359A  LEU*     3.8    17.5    -      -       +      -
    530A  SER*     5.6     8.1    -      -       -      +
    531A  LEU*     5.6    10.8    -      -       +      -
    534A  LEU*     5.2     5.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 350 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    345A  ILE      3.6     6.0    +      -       -      +
    346A  GLU      3.2    27.6    -      -       -      +
    347A  GLU      3.3     3.1    +      -       -      +
    348A  TYR      3.2     0.6    -      -       -      -
    349A  VAL*     1.3    78.4    -      -       -      +
    351A  GLN*     1.3    64.8    +      -       -      +
    353A  SER*     3.5     4.8    +      -       -      -
    354A  GLY*     3.4    17.0    +      -       -      -
    355A  TYR*     2.9    25.1    +      -       -      +
    357A  LEU      2.8    21.7    +      -       -      +
    358A  GLN*     3.1    20.6    +      -       -      +
    359A  LEU*     2.8    40.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 351 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  GLN*     3.3    30.7    +      -       -      +
    194A  THR*     3.0    31.4    +      -       -      +
    198A  PHE*     4.0    11.2    -      -       +      -
    347A  GLU      2.8    13.8    +      -       -      +
    348A  TYR      3.0     8.7    +      -       -      +
    350A  GLN*     1.3    78.4    -      -       -      +
    352A  LEU*     1.3    62.9    +      -       -      +
    353A  SER      3.4     0.3    +      -       -      -
    354A  GLY*     3.5     5.4    +      -       -      -
    580A  PHE*     3.7    34.1    -      -       +      +
    581A  HIS*     4.2    24.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 352 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  GLN*     3.0    20.0    +      -       -      +
    194A  THR*     5.5     2.2    -      -       -      +
    198A  PHE*     3.6    30.7    -      -       +      -
    348A  TYR*     3.1    15.8    +      -       +      +
    349A  VAL*     3.9    24.5    -      -       +      +
    351A  GLN*     1.3    79.4    -      -       -      +
    353A  SER*     1.3    66.2    +      -       -      +
    387A  TRP*     3.7    28.9    -      -       +      -
    434A  ILE*     5.6     1.6    -      -       +      -
    517A  ILE*     4.3     8.7    -      -       +      +
    518A  PHE*     3.8    35.9    -      -       +      -
    523A  ILE*     5.5     0.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 353 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     90A  HIS*     4.3    12.8    -      -       -      -
     94A  THR*     5.3     0.3    +      -       -      -
    192A  GLN*     4.0     4.9    +      -       -      +
    349A  VAL*     2.8    35.5    +      -       -      -
    350A  GLN*     3.5     9.2    +      -       -      -
    352A  LEU*     1.3    78.4    -      -       -      +
    354A  GLY*     1.3    69.3    +      -       -      +
    355A  TYR*     3.2    51.8    +      -       -      +
    359A  LEU*     4.5     3.7    -      -       -      +
    518A  PHE*     5.9     0.2    -      -       -      -
    523A  ILE*     5.3     6.9    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il