Contacts of the helix formed by residues 55 - 88 (chain A) in PDB entry 1QP7


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ALA 55 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51A  ALA      3.0     8.0    +      -       -      +
     52A  ARG*     3.0     8.5    +      -       -      +
     54A  LEU*     1.3    83.7    -      -       -      +
     56A  VAL*     1.3    65.7    +      -       +      +
     57A  ASN*     3.1     5.4    +      -       -      +
    706M    C      5.7     3.1    -      -       -      +
    707M    C      3.6    22.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 56 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  ARG*     2.8    65.2    +      -       +      +
     53A  SER*     3.6     2.7    -      -       -      -
     55A  ALA*     1.3    72.1    -      -       +      +
     57A  ASN*     1.3    70.3    +      -       -      +
     58A  HIS*     3.4    49.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 57 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53A  SER      2.8    19.5    +      -       -      -
     54A  LEU      4.5     5.7    -      -       -      +
     55A  ALA      3.1     6.1    +      -       -      +
     56A  VAL*     1.3    75.2    -      -       -      +
     58A  HIS*     1.3    62.6    +      -       -      +
    707M    C      4.3    16.1    -      -       -      +
    708M    G      4.7     6.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 58 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  ARG*     4.5    12.2    +      -       -      +
     53A  SER*     3.5    17.9    +      -       -      -
     56A  VAL*     3.4    43.1    +      -       +      +
     57A  ASN*     1.3    77.2    +      -       -      +
     59A  THR*     1.3    63.5    +      -       -      +
     60A  LYS*     3.9    35.4    -      -       +      +
    117A  ASP*     3.3    19.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 59 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49A  ALA*     5.9     2.9    -      -       -      +
     53A  SER*     4.1    19.2    +      -       -      -
     58A  HIS*     1.3    74.7    -      -       -      +
     60A  LYS*     1.3    72.9    +      -       -      +
     61A  SER*     2.7    30.9    +      -       -      -
     91A  THR*     5.7     0.2    -      -       -      -
    114A  LYS      3.7    10.5    -      -       -      +
    115A  ARG*     2.7    40.3    +      -       +      +
    117A  ASP*     2.9     7.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 60 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58A  HIS*     3.5    28.3    -      -       +      -
     59A  THR*     1.3    71.6    -      -       -      +
     61A  SER*     1.3    57.7    +      -       -      +
     88A  LYS      4.0     8.9    +      -       -      -
     89A  GLY*     3.8    16.7    +      -       -      +
     90A  TYR*     3.5    46.8    -      -       +      +
     91A  THR*     3.1    19.1    +      -       -      -
    117A  ASP*     2.3    27.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 61 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59A  THR*     2.7    26.6    +      -       -      -
     60A  LYS*     1.3    78.5    -      -       -      +
     62A  ILE*     1.3    62.8    +      -       -      +
     90A  TYR*     3.7     1.4    -      -       -      -
     91A  THR*     2.9    37.2    -      -       -      +
     93A  ILE*     4.7     8.1    -      -       -      +
    114A  LYS      5.3     1.4    +      -       -      -
    116A  VAL*     3.6    11.6    -      -       -      +
    117A  ASP*     2.9    28.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 62 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61A  SER*     1.3    75.5    -      -       -      +
     63A  GLY*     1.3    77.5    +      -       -      +
     64A  LEU      4.3     0.2    -      -       -      +
     85A  CYS*     4.0    18.8    -      -       -      -
     90A  TYR*     3.3    36.3    -      -       +      -
     91A  THR      2.7    12.5    +      -       -      +
     92A  LEU*     3.3     6.7    -      -       +      +
     93A  ILE*     3.0    22.1    +      -       -      +
    116A  VAL*     4.3     3.6    -      -       -      -
    117A  ASP*     4.9     0.2    -      -       +      -
    118A  GLY*     3.8    15.5    -      -       -      +
    120A  LEU*     3.0    36.6    -      -       +      +
    302A  PHE*     4.7     6.5    -      -       +      -
    305A  LEU*     3.9    18.4    -      -       +      -
    306A  LEU*     5.6     0.9    -      -       +      -
    309A  ILE*     5.3     4.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 63 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62A  ILE*     1.3    80.0    -      -       -      +
     64A  LEU*     1.3    54.6    +      -       -      -
     93A  ILE*     3.5     9.4    -      -       -      -
    111A  MET*     3.7    13.2    -      -       -      -
    116A  VAL*     3.8    10.4    -      -       -      +
    118A  GLY      3.3     7.9    +      -       -      -
    119A  LEU*     2.8    28.5    -      -       -      +
    120A  LEU      2.8    19.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 64 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62A  ILE*     5.5     0.2    -      -       +      -
     63A  GLY*     1.3    70.5    -      -       -      -
     65A  LEU*     1.3    63.7    +      -       -      +
     66A  ALA*     3.3     9.3    +      -       +      +
     78A  ILE*     4.0    23.6    -      -       +      -
     81A  VAL*     3.8    34.1    -      -       +      -
     92A  LEU*     3.8    16.4    -      -       +      +
     93A  ILE      2.8    13.5    +      -       -      +
     94A  LEU*     4.2    14.8    -      -       +      +
     95A  GLY*     2.7    32.4    +      -       -      -
    111A  MET*     3.9     2.3    -      -       -      +
    120A  LEU*     3.5    24.7    -      -       +      +
    122A  MET*     4.3    21.1    -      -       +      -
    145A  MET*     4.8     3.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 65 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63A  GLY      3.8     1.0    +      -       -      -
     64A  LEU*     1.3    70.7    -      -       -      +
     66A  ALA*     1.3    67.3    +      -       -      +
     95A  GLY*     3.5    10.1    -      -       -      +
     97A  ALA*     4.1    15.5    -      -       +      -
    104A  GLN*     4.6    11.0    -      -       +      +
    107A  TYR*     4.3    16.8    -      -       +      -
    108A  LEU*     3.6    40.8    -      -       +      +
    111A  MET*     4.6    12.3    -      -       -      -
    119A  LEU*     4.7     5.2    -      -       +      -
    120A  LEU      2.8    14.3    +      -       -      +
    121A  VAL*     4.4    11.7    -      -       +      -
    122A  MET      3.0    23.0    +      -       -      -
    123A  CYS*     3.7    20.0    -      -       -      -
    130A  LEU*     6.2     0.7    -      -       +      -
    134A  LEU*     5.4     1.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 66 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LEU*     3.3    10.5    +      -       +      -
     65A  LEU*     1.3    80.0    -      -       -      +
     67A  THR*     1.3    61.6    +      -       -      +
     68A  SER      4.4     5.4    -      -       -      +
     78A  ILE*     4.7     7.2    -      -       +      -
     94A  LEU*     4.3    13.2    -      -       +      -
     95A  GLY      2.7    16.3    +      -       -      +
     96A  ASN*     3.6    15.5    -      -       -      +
     97A  ALA*     3.1    20.1    +      -       -      +
    122A  MET*     3.2    22.9    -      -       +      +
    123A  CYS*     4.3     3.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 67 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66A  ALA*     1.3    76.6    -      -       -      +
     68A  SER*     1.3    64.9    +      -       -      +
     74A  PHE*     4.2    16.8    -      -       +      -
     96A  ASN*     3.3    13.4    -      -       -      +
     98A  TRP*     3.1    32.2    +      -       +      +
     99A  ASN*     4.4    18.5    +      -       +      +
    122A  MET*     2.6    23.7    +      -       -      +
    123A  CYS*     3.2     9.8    -      -       -      +
    124A  SER*     2.9    29.2    +      -       -      +
    190A  ARG*     4.8     6.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 68 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     66A  ALA*     4.4     0.9    -      -       -      +
     67A  THR*     1.3    84.0    +      -       -      +
     69A  SER*     1.3    61.9    +      -       -      +
     70A  GLU*     3.5    11.8    +      -       -      +
     71A  ALA*     4.0    10.0    +      -       -      +
     74A  PHE*     3.2    33.8    -      -       -      +
     78A  ILE*     4.3     4.2    -      -       -      +
     96A  ASN*     3.2    12.8    +      -       -      +
     98A  TRP*     3.7    33.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with SER 69 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  SER*     1.3    76.7    +      -       -      +
     70A  GLU*     1.3    65.9    +      -       -      +
     71A  ALA      3.5     1.1    -      -       -      -
     74A  PHE*     4.4     0.9    -      -       -      -
     75A  ALA*     3.5    21.7    -      -       -      +
     78A  ILE*     4.0    21.3    -      -       -      -
     94A  LEU*     4.3    16.1    -      -       -      +
     96A  ASN*     3.4    22.7    +      -       -      +
     98A  TRP*     5.2     1.8    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 70 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  SER*     3.5     4.9    +      -       -      +
     69A  SER*     1.3    80.1    +      -       -      +
     71A  ALA*     1.3    73.4    +      -       -      +
     72A  ALA*     3.2     3.3    +      -       -      -
     75A  ALA*     3.6     8.8    -      -       -      +
     98A  TRP*     6.3     1.6    -      -       +      -
    222A  GLU*     5.3     5.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 71 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  SER*     4.0     6.9    +      -       -      +
     70A  GLU*     1.3    82.5    +      -       -      +
     72A  ALA*     1.3    58.5    +      -       -      +
     73A  TYR      3.2     0.9    -      -       -      +
     74A  PHE*     2.8    33.1    +      -       +      +
     75A  ALA      2.5    33.6    +      -       -      -
    222A  GLU*     4.8    13.2    -      -       -      +
    249A  ILE*     6.2     1.6    -      -       +      -
    599A  HPA      4.3    15.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 72 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     70A  GLU      3.2     6.3    +      -       -      -
     71A  ALA*     1.3    70.1    -      -       -      +
     73A  TYR*     1.3    55.6    +      -       -      +
     75A  ALA*     3.1     4.3    +      -       -      +
     76A  GLU*     2.7    45.1    +      -       -      +
    249A  ILE*     4.0    24.8    -      -       +      +
    277A  VAL*     3.7    29.2    -      -       +      -
    279A  ASN*     5.5     3.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 73 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     71A  ALA      3.2     0.4    -      -       -      -
     72A  ALA*     1.3    80.1    -      -       -      +
     74A  PHE*     1.3    86.4    +      +       -      +
     76A  GLU*     3.1     9.5    +      -       -      +
     77A  ILE*     3.2    34.8    +      -       +      +
    122A  MET*     5.2     2.7    -      -       -      -
    146A  ASP*     6.0     2.4    -      -       -      +
    160A  ASP*     4.9     0.7    +      -       -      -
    192A  THR*     4.0    11.3    -      -       +      +
    196A  ARG*     3.8     4.5    -      -       -      -
    249A  ILE*     5.7     1.9    -      -       +      +
    275A  ASP*     3.2    26.0    -      -       -      +
    277A  VAL*     4.2     8.8    -      -       +      +
    292A  GLN*     3.3    30.4    +      -       +      -
    294A  LYS*     4.4    16.5    -      -       +      +
    297A  LEU*     4.5     6.5    -      -       +      +
    599A  HPA      3.2    57.4    -      +       -      +
----------------------------------------------------------
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Residues in contact with PHE 74 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67A  THR*     4.2     8.5    -      -       +      -
     68A  SER*     3.2    44.0    -      -       -      +
     69A  SER*     4.4     2.9    -      -       -      -
     71A  ALA*     2.8    27.1    +      -       +      +
     73A  TYR*     1.3    99.8    -      +       -      +
     75A  ALA*     1.3    67.0    +      -       -      +
     77A  ILE*     3.0    15.9    +      -       -      +
     78A  ILE*     3.0    20.6    +      -       +      +
    122A  MET*     4.1    26.0    -      -       +      -
    124A  SER*     3.8    17.9    -      -       -      -
    190A  ARG*     4.8     2.0    -      -       -      -
    599A  HPA      3.5    32.8    -      +       -      -
----------------------------------------------------------
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Residues in contact with ALA 75 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69A  SER      3.5    20.6    +      -       -      +
     70A  GLU      3.6     9.0    -      -       -      +
     71A  ALA      2.5    20.0    +      -       -      +
     72A  ALA*     3.5     6.3    -      -       -      +
     74A  PHE*     1.3    75.3    -      -       -      +
     76A  GLU*     1.3    62.5    +      -       +      +
     78A  ILE*     3.4     5.9    +      -       -      +
     79A  GLU*     3.0    24.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 76 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     72A  ALA*     2.7    22.7    +      -       -      +
     73A  TYR      3.5     4.7    -      -       -      +
     75A  ALA*     1.3    73.8    -      -       +      +
     77A  ILE*     1.3    65.7    +      -       -      +
     79A  GLU*     3.4     5.9    +      -       -      +
     80A  ALA*     3.1    20.1    +      -       -      +
    277A  VAL*     3.5    13.7    -      -       -      +
    278A  ARG*     2.7    68.9    +      -       +      +
    294A  LYS*     3.2    35.1    -      -       +      +
    295A  ASP*     5.6     1.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 77 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     73A  TYR*     3.2    49.7    +      -       +      +
     74A  PHE*     3.0     6.7    +      -       -      +
     76A  GLU*     1.3    78.4    -      -       -      +
     78A  ILE*     1.3    65.8    +      -       -      +
     80A  ALA*     2.8    16.6    +      -       -      +
     81A  VAL*     2.9    19.4    +      -       +      -
    122A  MET*     4.0    26.7    -      -       +      -
    145A  MET*     3.9    26.2    -      -       +      -
    294A  LYS*     4.3    26.5    -      -       +      +
    297A  LEU*     5.0    11.4    -      -       +      -
    298A  GLY*     4.9     4.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 78 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LEU*     4.0    25.1    -      -       +      -
     66A  ALA*     4.7     7.4    -      -       +      -
     68A  SER      4.3     5.4    -      -       -      +
     69A  SER*     4.0    29.2    -      -       -      -
     74A  PHE*     3.0    22.4    +      -       +      +
     75A  ALA*     3.8     4.9    -      -       -      +
     77A  ILE*     1.3    79.9    -      -       -      +
     79A  GLU*     1.3    68.0    +      -       -      +
     81A  VAL*     2.9     8.1    +      -       -      +
     82A  GLU*     2.9    23.8    +      -       +      +
     92A  LEU*     5.1     7.4    -      -       +      -
     94A  LEU*     4.4    23.6    -      -       +      -
    122A  MET*     4.5    10.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 79 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     75A  ALA      3.0    17.5    +      -       -      +
     76A  GLU*     3.7     7.4    -      -       -      +
     78A  ILE*     1.3    79.5    -      -       -      +
     80A  ALA*     1.3    65.5    +      -       -      +
     82A  GLU*     3.3    25.4    -      -       +      +
     83A  LYS*     3.3    22.6    +      -       +      +
    278A  ARG*     3.2    26.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 80 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76A  GLU      3.1     9.3    +      -       -      +
     77A  ILE*     2.8    12.7    +      -       -      +
     79A  GLU*     1.3    76.3    -      -       -      +
     81A  VAL*     1.3    69.9    +      -       -      +
     83A  LYS*     2.7    30.7    +      -       -      +
     84A  ASN*     3.2    12.9    +      -       -      +
    295A  ASP*     4.0    34.8    -      -       +      +
    298A  GLY*     4.5     4.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 81 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LEU*     3.8    28.3    -      -       +      -
     77A  ILE*     2.9    32.1    +      -       +      +
     78A  ILE      3.3     7.0    -      -       -      +
     80A  ALA*     1.3    72.3    -      -       -      +
     82A  GLU*     1.3    67.1    +      -       -      +
     84A  ASN*     2.9    19.8    +      -       -      +
     85A  CYS*     3.1    25.5    +      -       -      -
     92A  LEU*     4.5     5.6    -      -       +      -
    120A  LEU*     4.4    16.6    -      -       +      -
    145A  MET*     4.4    15.7    -      -       +      -
    298A  GLY*     4.4    13.2    -      -       -      +
    301A  ALA*     5.9     0.2    -      -       +      -
    302A  PHE*     5.0     5.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 82 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     78A  ILE*     2.9    13.9    +      -       +      +
     79A  GLU*     3.3    20.4    -      -       +      +
     81A  VAL*     1.3    79.3    -      -       -      +
     83A  LYS*     1.3    76.3    +      -       +      +
     85A  CYS*     3.0     8.8    +      -       -      +
     86A  PHE*     2.8    33.4    +      -       -      +
     92A  LEU*     4.3    20.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 83 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     79A  GLU*     3.6    28.3    +      -       +      +
     80A  ALA*     2.7    19.2    +      -       -      +
     82A  GLU*     1.3    87.3    -      -       +      +
     84A  ASN*     1.3    68.2    +      -       -      +
     86A  PHE*     3.3     6.2    +      -       -      +
     87A  GLN*     3.1    25.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 84 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     80A  ALA*     3.2    18.6    +      -       -      +
     81A  VAL*     2.9     8.3    +      -       -      +
     83A  LYS*     1.3    82.6    -      -       -      +
     85A  CYS*     1.3    67.5    +      -       -      +
     87A  GLN*     3.3    20.5    +      -       -      +
     88A  LYS*     3.3    22.2    +      -       -      +
    295A  ASP      5.2     0.4    +      -       -      -
    299A  GLU*     3.6    43.1    -      -       -      +
    302A  PHE*     3.7    26.3    -      -       +      -
    303A  ASN*     5.0     3.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 85 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62A  ILE*     4.0    20.9    -      -       -      -
     81A  VAL*     3.1    26.3    +      -       -      -
     82A  GLU*     3.0    10.1    +      -       -      +
     84A  ASN*     1.3    74.3    -      -       -      +
     86A  PHE*     1.3    63.7    +      -       -      +
     88A  LYS      3.0     8.3    +      -       -      -
     90A  TYR*     2.8    42.5    +      -       +      +
     92A  LEU*     4.2    17.0    -      -       +      -
    302A  PHE*     3.5    29.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 86 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     82A  GLU*     2.8    27.0    +      -       -      +
     83A  LYS*     3.4    12.3    -      -       -      +
     85A  CYS*     1.3    73.1    -      -       -      +
     87A  GLN*     1.3    63.3    -      -       +      +
     89A  GLY*     3.1    19.4    +      -       -      -
     90A  TYR      3.8     6.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 87 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83A  LYS      3.3    14.7    -      -       -      +
     84A  ASN*     3.5    17.4    -      -       -      +
     86A  PHE*     1.3    86.2    -      -       +      +
     88A  LYS*     1.3    88.9    +      -       -      +
     89A  GLY      3.4     1.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 88 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  LYS*     4.0     6.4    +      -       -      -
     84A  ASN*     3.5    19.1    -      -       -      +
     85A  CYS      3.0     3.5    +      -       -      +
     87A  GLN*     1.3   103.3    -      -       -      +
     89A  GLY*     1.3    58.8    +      -       -      +
     90A  TYR*     2.9    28.8    -      -       +      -
    302A  PHE*     3.7    18.6    -      -       +      -
    303A  ASN*     4.9     8.7    -      -       -      -
    306A  LEU*     4.0    21.1    -      -       +      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il