Contacts of the helix formed by residues 845 - 873 (chain C) in PDB entry 1S32
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 845 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817C ARG* 4.5 8.9 + - - +
831C HIS* 5.2 4.5 - - - -
843C VAL 3.8 1.2 + - - -
844C GLY* 1.3 72.1 - - - -
846C GLY* 1.3 61.2 + - - +
848C PRO* 3.3 17.7 - - - +
849C VAL* 3.9 11.5 - - - +
1318D TYR* 4.6 20.9 - - + +
257J A 3.2 25.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 846 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
845C ALA* 1.3 77.6 - - - +
847C ALA* 1.3 64.4 + - - +
848C PRO 3.5 0.2 - - - -
849C VAL* 3.3 8.7 + - - +
850C TYR* 2.9 26.9 + - - +
1288D SER* 3.7 11.6 - - - -
1315D VAL* 3.7 13.1 - - - +
1318D TYR* 5.5 4.2 - - - -
1319D THR* 6.2 1.3 - - - -
2018D CL 3.2 13.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 847 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
834C LEU* 4.4 4.7 - - + -
843C VAL* 3.8 7.6 - - + -
844C GLY 3.2 8.7 + - - +
846C GLY* 1.3 78.0 - - - +
848C PRO* 1.3 66.2 - - + +
850C TYR* 3.7 2.4 - - - +
851C LEU* 2.9 29.5 + - - +
1286D ILE* 3.4 27.1 - - + +
1287D THR 3.9 8.1 - - - -
1288D SER* 3.9 11.0 - - - +
1291D ILE* 3.9 11.1 - - + +
2018D CL 3.6 3.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 848 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817C ARG* 4.0 5.8 - - - +
827C VAL* 3.9 9.6 - - + +
830C VAL* 3.7 13.8 - - + +
831C HIS* 3.5 53.4 - - + +
834C LEU* 4.0 3.8 - - + -
843C VAL* 4.0 6.5 - - + -
844C GLY 3.1 15.3 - - - +
845C ALA 3.3 13.0 - - - +
847C ALA* 1.3 93.7 - - + +
849C VAL* 1.3 55.4 + - - +
852C ALA* 2.9 31.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 849 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
821C ALA* 3.9 10.8 - - + -
823C LEU* 3.6 3.9 - - + +
827C VAL* 3.9 27.1 - - + -
845C ALA 3.9 14.1 - - - +
846C GLY* 3.3 8.5 + - - +
847C ALA 3.2 0.8 - - - -
848C PRO* 1.3 75.4 - - - +
850C TYR* 1.3 66.3 + - - +
853C ALA* 3.1 21.8 + - - +
1314D ALA* 3.6 38.6 - - + +
1315D VAL* 3.8 7.9 - - + +
1318D TYR* 3.9 30.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 850 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846C GLY 2.9 16.6 + - - +
847C ALA 3.7 3.8 - - - +
849C VAL* 1.3 77.3 - - - +
851C LEU* 1.3 62.2 + - - +
853C ALA* 3.1 6.1 + - - +
854C VAL* 3.0 35.8 + - + +
1288D SER* 3.9 18.8 - - - -
1291D ILE* 3.6 19.7 - - + -
1292D GLN* 2.6 59.4 + - + +
1295D VAL* 4.4 4.0 - - + -
1307D ALA 4.5 1.6 - - - -
1308D VAL* 3.3 19.3 + - - +
1311D GLY* 3.6 26.0 - - - -
1312D THR* 3.5 14.4 - - - -
1315D VAL* 3.7 14.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 851 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
830C VAL* 3.8 11.9 - - + -
834C LEU* 3.7 22.2 - - + -
847C ALA 2.9 17.2 + - - +
850C TYR* 1.3 74.2 - - - +
852C ALA* 1.3 65.5 + - - +
854C VAL* 3.2 3.6 + - + +
855C LEU* 3.0 43.1 + - + +
1267D PHE* 3.6 35.7 - - + +
1270D ILE* 3.7 44.0 - - + -
1271D ALA* 5.1 1.3 - - + -
1291D ILE* 4.1 15.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 852 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
823C LEU* 4.0 13.0 - - + -
825C PHE* 3.7 18.7 - - + +
827C VAL* 4.1 12.8 - - + -
830C VAL* 4.1 21.5 - - + +
848C PRO 2.9 19.8 + - - +
849C VAL 3.9 3.6 - - - +
851C LEU* 1.3 76.2 - - - +
853C ALA* 1.3 58.3 + - - +
855C LEU* 3.4 4.1 + - - +
856C GLU* 2.9 31.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 853 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
823C LEU* 3.7 18.7 - - + +
849C VAL 3.1 13.9 + - - +
850C TYR 3.3 9.6 - - - +
851C LEU 3.1 0.2 - - - -
852C ALA* 1.3 77.9 - - - +
854C VAL* 1.3 57.8 + - - +
856C GLU* 3.4 2.9 + - - +
857C TYR* 2.9 29.6 + - - +
1310D GLU* 3.8 18.7 - - + +
1311D GLY* 3.8 5.4 - - - -
1314D ALA* 3.7 23.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 854 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
850C TYR* 3.0 32.3 + - + +
851C LEU* 3.2 8.5 + - - +
853C ALA* 1.3 73.9 - - - +
855C LEU* 1.3 58.6 + - - +
857C TYR* 3.2 6.4 + - - +
858C LEU* 2.9 41.2 + - + +
1270D ILE* 3.8 26.2 - - + -
1295D VAL* 4.0 13.7 - - + -
1299D LEU* 4.6 2.0 - - + -
1307D ALA* 3.7 39.9 - - + +
1311D GLY* 4.6 0.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 855 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825C PHE* 3.8 16.4 - - + -
830C VAL* 4.4 14.4 - - + -
851C LEU* 3.0 30.7 + - + +
852C ALA* 3.8 4.3 - - - +
854C VAL* 1.3 75.8 - - - +
856C GLU* 1.3 61.7 + - - +
858C LEU* 3.4 5.3 + - + +
859C THR* 2.9 29.6 + - - -
1234D TYR* 4.5 2.5 - - - +
1262D PHE* 5.6 0.3 - - - -
1263D VAL* 3.8 36.6 - - + +
1266D VAL* 3.8 19.1 - - + -
1267D PHE* 3.8 39.9 - - + +
1270D ILE* 4.9 0.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 856 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
822C GLY 4.8 1.9 - - - +
823C LEU* 3.5 19.9 - - - +
824C GLN* 2.6 45.7 + - - +
825C PHE* 2.9 33.5 + - + -
852C ALA 2.9 17.9 + - - +
853C ALA* 3.6 5.2 - - - +
855C LEU* 1.3 78.0 - - - +
857C TYR* 1.3 62.4 + - - +
859C THR* 3.4 3.1 + - - -
860C ALA* 3.1 22.9 + - + +
1241D VAL* 4.0 12.1 - - + +
1244D GLN* 4.8 4.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 857 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
853C ALA 2.9 18.1 + - - +
854C VAL* 3.2 3.3 + - - +
856C GLU* 1.3 77.9 - - - +
858C LEU* 1.3 81.3 + - + +
860C ALA* 3.3 8.5 + - + +
861C GLU* 3.0 37.1 + - + +
1303D LEU* 3.7 38.1 - - + +
1306D HIS* 3.0 37.3 + + + +
1307D ALA* 3.8 18.4 - - + -
1310D GLU* 3.6 37.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 858 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
854C VAL* 2.9 31.3 + - + +
855C LEU* 4.0 4.7 - - - +
857C TYR* 1.3 97.6 - - + +
859C THR* 1.3 61.7 + - - +
861C GLU* 3.3 5.3 + - - +
862C ILE* 3.0 24.1 + - - +
893C LEU* 5.3 3.6 - - + +
896C LEU* 4.8 4.9 - - + -
1262D PHE* 4.0 19.5 - - + -
1266D VAL* 3.6 36.6 - - + -
1299D LEU* 4.1 27.1 - - + -
1303D LEU* 4.2 21.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 859 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825C PHE* 3.4 22.6 - - + -
855C LEU 2.9 18.6 + - - -
856C GLU 3.5 5.8 - - - -
858C LEU* 1.3 74.9 - - - +
860C ALA* 1.3 60.6 + - - +
862C ILE* 3.1 10.4 - - - +
863C LEU* 2.8 52.1 + - + +
1238D VAL* 4.3 9.4 - - + -
1241D VAL* 4.3 9.0 - - + -
1259D MET* 3.6 13.8 - - + +
1262D PHE* 4.3 4.1 - - - -
1263D VAL* 3.7 13.9 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 860 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
856C GLU* 3.1 11.8 + - + +
857C TYR* 3.4 14.4 - - + +
859C THR* 1.3 78.1 - - - +
861C GLU* 1.3 57.6 + - - +
863C LEU* 3.8 1.6 - - - +
864C GLU* 2.8 33.8 + - - +
1241D VAL* 3.6 22.2 - - + +
1245D VAL* 4.4 13.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 861 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
857C TYR* 3.0 30.9 + - + +
858C LEU* 3.5 12.6 - - + +
859C THR 3.2 0.2 - - - -
860C ALA* 1.3 77.3 - - - +
862C ILE* 1.3 61.6 + - - +
864C GLU* 3.4 6.8 + - - +
865C LEU* 3.2 46.1 + - - +
890C ASP* 4.9 4.7 - - - +
893C LEU* 4.6 13.9 - - + -
1303D LEU* 3.9 27.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 862 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
858C LEU 3.0 16.2 + - - +
859C THR* 3.1 12.3 - - - +
861C GLU* 1.3 76.3 - - - +
863C LEU* 1.3 61.7 + - - +
865C LEU* 3.4 2.6 + - - +
866C ALA* 2.8 27.6 + - - +
883C LEU* 4.2 23.3 - - + +
886C ALA* 4.4 5.3 - - + +
887C VAL* 3.8 29.4 - - + -
893C LEU* 4.3 18.6 - - + +
897C LEU* 4.8 7.2 - - + -
902C ILE* 5.9 1.3 - - + -
1258D ILE* 6.2 2.0 - - + -
1259D MET* 3.5 29.6 - - + -
1262D PHE* 4.2 19.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 863 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
859C THR* 2.8 37.4 + - + +
860C ALA* 3.9 2.9 - - - +
862C ILE* 1.3 75.8 - - - +
864C GLU* 1.3 61.9 + - - +
866C ALA* 4.0 1.5 - - - +
867C GLY* 2.8 25.3 + - - -
878C ILE* 4.3 12.9 - - + +
883C LEU* 4.9 4.3 - - + -
1238D VAL* 3.7 23.8 - - + +
1241D VAL* 4.3 2.7 - - + -
1242D LEU* 3.7 31.6 - - + +
1245D VAL* 4.2 10.5 - - + -
1246D HIS* 3.4 10.2 - - - -
1251D ILE* 4.4 9.9 - - + -
1259D MET* 3.9 28.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 864 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860C ALA 2.8 17.9 + - - +
861C GLU* 3.6 10.1 - - - +
862C ILE 3.3 0.2 - - - -
863C LEU* 1.3 77.1 - - - +
865C LEU* 1.3 70.1 + - + +
868C ASN* 3.1 35.0 + - - +
1245D VAL* 3.6 29.8 - - + +
1246D HIS* 2.8 29.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 865 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
861C GLU* 3.2 28.3 + - - +
862C ILE 3.9 1.8 - - - +
864C GLU* 1.3 83.7 - - + +
866C ALA* 1.3 60.0 + - - +
868C ASN* 3.3 17.2 + - - +
869C ALA* 3.0 26.0 + - - +
886C ALA* 3.6 19.7 - - + +
890C ASP* 3.8 26.2 - - + +
893C LEU* 3.6 29.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 866 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
862C ILE 2.8 21.7 + - - +
863C LEU* 4.0 3.1 - - - +
865C LEU* 1.3 70.2 - - - +
867C GLY* 1.3 61.6 + - - +
869C ALA* 3.1 3.2 + - - +
870C ALA* 2.8 29.1 + - - +
878C ILE* 4.1 16.2 - - + -
882C HIS* 3.8 15.4 - - - +
883C LEU* 3.6 28.9 - - + -
886C ALA* 3.5 8.7 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 867 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
863C LEU 2.8 11.3 + - - -
866C ALA* 1.3 75.9 - - - +
868C ASN* 1.3 57.9 + - - +
870C ALA* 3.2 3.7 + - - +
871C ARG* 2.9 28.6 + - - +
878C ILE* 3.7 16.2 - - - +
1246D HIS* 3.5 28.3 - - - -
1249D THR* 4.5 6.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 868 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
864C GLU* 3.1 33.3 + - - +
865C LEU* 3.5 18.3 - - + +
866C ALA 3.1 0.2 - - - -
867C GLY* 1.3 78.8 - - - +
869C ALA* 1.3 57.0 + - - +
871C ARG* 3.3 8.0 + - - +
872C ASP* 2.9 39.2 + - - +
1246D HIS* 3.1 23.8 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 869 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865C LEU 3.0 14.2 + - - +
866C ALA 3.1 7.8 + - - +
868C ASN* 1.3 77.2 - - - +
870C ALA* 1.3 60.0 + - - +
872C ASP* 3.2 11.7 + - - +
873C ASN* 2.7 33.9 + - - +
882C HIS* 3.9 22.4 - - + +
885C LEU* 4.2 22.2 - - + -
886C ALA* 4.7 2.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 870 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
866C ALA 2.8 12.9 + - - +
867C GLY* 3.4 9.6 - - - +
869C ALA* 1.3 76.9 - - - +
871C ARG* 1.3 63.5 + - - +
873C ASN* 2.9 9.2 + - - -
875C LYS* 2.9 34.2 + - - +
877C ARG 4.4 5.4 - - - +
878C ILE* 4.2 12.3 - - + -
882C HIS* 3.6 32.0 - - + +
1249D THR* 5.1 4.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 871 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
867C GLY 2.9 13.3 + - - +
868C ASN* 3.7 12.6 - - - +
870C ALA* 1.3 75.5 - - - +
872C ASP* 1.3 61.8 + - - +
874C LYS* 2.8 23.1 + - - +
875C LYS 3.8 8.2 + - - +
1246D HIS* 5.5 10.6 + - + -
1249D THR* 5.9 1.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 872 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
868C ASN* 2.9 26.9 + - - +
869C ALA* 3.3 15.4 - - - +
870C ALA 3.2 0.2 - - - -
871C ARG* 1.3 79.5 - - - +
873C ASN* 1.3 62.5 + - - +
874C LYS* 3.2 8.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 873 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
869C ALA* 2.7 27.0 + - - +
870C ALA 2.9 7.2 + - - +
872C ASP* 1.3 80.1 - - - +
874C LYS* 1.3 70.7 + - - +
875C LYS* 3.0 27.5 + - + +
881C ARG* 6.3 0.7 - - - -
882C HIS* 3.7 22.8 - - - +
885C LEU* 3.7 19.6 - - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il