Contacts of the helix formed by residues 44 - 99 (chain A) in PDB entry 1UCU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 44 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A LYS* 3.9 20.2 - - + +
42A ASP 2.3 27.4 + - - +
43A ASP* 1.3 63.3 - - - +
45A ALA* 1.3 52.7 + - - +
47A GLN* 3.0 4.8 + - - +
48A ALA* 2.3 43.6 + - + +
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Residues in contact with ALA 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A ASP* 2.9 2.9 - - - +
44A ALA* 1.3 79.9 - - - +
46A GLY* 1.3 56.5 + - - +
48A ALA* 3.0 8.8 + - - +
49A ILE* 2.9 35.6 + - - +
52A ARG* 3.7 13.0 + - - +
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Residues in contact with GLY 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A ASP* 2.4 25.5 + - - +
45A ALA* 1.3 72.2 - - - +
47A GLN* 1.3 59.1 + - - -
49A ILE* 3.3 28.0 - - - +
453A ILE* 3.7 10.0 - - - +
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Residues in contact with GLN 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40A ALA 4.0 8.9 + - - +
41A LYS* 2.9 58.7 - - + +
42A ASP* 4.7 1.3 - - - +
43A ASP* 2.8 16.9 + - + +
44A ALA 3.7 4.7 - - - +
46A GLY* 1.3 73.0 - - - +
48A ALA* 1.3 64.7 + - - +
49A ILE 3.1 1.6 - - - -
50A ALA* 3.1 20.4 + - - +
51A ASN* 3.4 8.8 + - - -
453A ILE* 2.9 47.2 - - + +
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Residues in contact with ALA 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A ALA* 2.3 35.1 + - + +
45A ALA* 3.2 9.0 - - - +
47A GLN* 1.3 65.4 - - - +
49A ILE* 1.3 54.8 + - - +
50A ALA 3.0 2.5 - - - -
51A ASN* 2.9 19.1 + - + +
52A ARG* 2.8 46.8 + - + +
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Residues in contact with ILE 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A ALA 2.9 16.6 + - - +
46A GLY* 3.3 19.5 - - - +
47A GLN 3.1 0.4 - - - -
48A ALA* 1.3 79.0 - - - +
50A ALA* 1.3 50.5 + - - +
52A ARG* 2.8 41.0 + - + +
53A PHE* 2.7 59.4 + - + -
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Residues in contact with ALA 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46A GLY 4.0 1.2 + - - -
47A GLN 3.1 14.2 + - - +
48A ALA 3.0 0.2 - - - -
49A ILE* 1.3 80.0 - - - +
51A ASN* 1.3 59.9 + - - +
53A PHE* 3.0 31.4 + - + +
54A THR* 3.1 16.3 + - - +
449A VAL* 6.5 0.2 - - + -
450A ARG* 4.3 18.0 - - + +
453A ILE* 3.4 34.3 - - + +
454A GLU* 5.0 1.1 - - + +
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Residues in contact with ASN 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A LYS* 5.2 10.5 + - - +
47A GLN 3.4 20.8 + - - -
48A ALA* 2.9 16.5 + - - +
50A ALA* 1.3 75.3 - - - +
52A ARG* 1.3 61.3 + - - +
54A THR* 3.3 8.9 + - - +
55A ALA* 2.9 25.8 + - - +
58A LYS* 5.0 2.8 + - - -
453A ILE* 5.6 0.8 - - - +
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Residues in contact with ARG 52 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A ALA* 3.7 21.5 + - - +
48A ALA* 2.8 24.4 + - + +
49A ILE* 2.8 55.4 + - + +
51A ASN* 1.3 76.3 - - - +
53A PHE* 1.3 51.8 + - - +
55A ALA* 3.1 9.4 + - + +
56A ASN* 2.5 47.0 + - - +
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Residues in contact with PHE 53 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ILE* 2.7 43.2 + - + -
50A ALA* 3.0 21.3 + - + +
52A ARG* 1.3 75.6 - - - +
54A THR* 1.3 61.7 + - + +
56A ASN* 2.7 33.7 + - - +
57A ILE* 3.1 19.3 + - + +
446A LEU* 3.6 49.5 - - + +
449A VAL* 4.2 22.2 - - + -
450A ARG* 4.8 15.3 - - + -
453A ILE* 6.1 1.8 - - + -
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Residues in contact with THR 54 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50A ALA 3.1 15.4 + - - +
51A ASN* 3.3 7.3 + - - -
52A ARG 3.2 0.2 - - - -
53A PHE* 1.3 75.8 - - - +
55A ALA* 1.3 58.0 + - - +
57A ILE* 3.1 14.1 + - + +
58A LYS* 2.8 54.0 + - - +
450A ARG* 4.7 24.9 - - + +
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Residues in contact with ALA 55 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51A ASN 2.9 14.3 + - - +
52A ARG* 3.2 15.5 - - + +
54A THR* 1.3 77.1 + - - +
56A ASN* 1.3 51.9 + - - +
58A LYS* 3.2 20.8 + - + +
59A GLY* 2.8 29.6 + - - -
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Residues in contact with ASN 56 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A ARG* 2.5 37.6 + - - +
53A PHE* 2.7 36.0 + - - +
55A ALA* 1.3 74.6 - - - +
57A ILE* 1.3 51.4 + - - +
59A GLY* 3.1 3.5 + - - -
60A LEU* 2.5 44.1 + - + +
149A ALA* 3.5 29.7 - - + +
150A ASN* 4.5 8.1 + - - +
446A LEU* 4.7 8.5 - - + +
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Residues in contact with ILE 57 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53A PHE* 3.1 12.0 + - + +
54A THR* 3.1 14.2 + - + +
56A ASN* 1.3 73.4 - - + +
58A LYS* 1.3 56.0 - - + +
60A LEU* 3.4 16.8 - - + -
61A THR* 2.5 45.8 + - + -
443A VAL* 3.5 44.0 - - + +
446A LEU* 4.9 6.7 - - + -
447A THR* 4.2 16.4 - - + +
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Residues in contact with LYS 58 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51A ASN 5.0 2.2 + - - -
54A THR* 2.8 37.0 + - - +
55A ALA* 3.2 24.3 - - + +
56A ASN 3.1 0.2 - - - -
57A ILE* 1.3 75.6 - - - +
59A GLY* 1.3 62.7 + - - +
61A THR* 2.6 21.8 + - - -
62A GLN* 3.1 28.8 + - - +
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Residues in contact with GLY 59 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55A ALA 2.8 14.1 + - - -
56A ASN* 3.3 4.9 - - - -
58A LYS* 1.3 76.1 - - - +
60A LEU* 1.3 51.0 + - - +
62A GLN* 3.4 13.6 + - - +
63A ALA* 2.6 33.7 + - - +
146A GLN* 5.9 1.0 - - - +
148A GLY 4.8 6.4 - - - +
149A ALA* 5.3 5.8 - - - -
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Residues in contact with LEU 60 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56A ASN* 2.5 33.8 + - + +
57A ILE* 3.1 18.1 + - + +
59A GLY* 1.3 73.9 - - - +
61A THR* 1.3 58.9 + - - +
62A GLN 3.3 0.4 - - - -
63A ALA* 3.3 6.4 - - + +
64A SER* 2.8 25.5 + - - -
147A VAL 4.0 7.2 - - - +
148A GLY* 4.9 0.2 - - - -
149A ALA* 4.8 11.2 - - + +
439A LEU* 3.6 46.4 - - + +
442A THR* 5.6 1.3 - - - +
443A VAL* 3.5 28.7 - - + -
446A LEU* 5.1 6.3 - - + -
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Residues in contact with THR 61 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57A ILE* 2.5 31.6 + - + +
58A LYS* 2.6 27.1 + - - -
60A LEU* 1.3 72.0 - - - +
62A GLN* 1.3 62.5 + - - +
63A ALA 3.1 0.2 - - - -
64A SER* 3.3 6.7 + - - -
65A ARG* 3.0 46.4 + - - +
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Residues in contact with GLN 62 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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58A LYS* 3.1 27.1 + - - +
59A GLY* 3.6 11.0 - - - +
61A THR* 1.3 76.3 - - - +
63A ALA* 1.3 53.1 + - - +
65A ARG* 3.3 29.2 + - - +
66A ASN* 2.7 49.5 + - - +
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Residues in contact with ALA 63 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59A GLY 2.6 18.9 + - - +
60A LEU* 3.3 17.0 - - + +
62A GLN* 1.3 75.1 - - - +
64A SER* 1.3 53.9 + - - +
66A ASN* 3.1 3.1 + - - +
67A ALA* 2.6 36.3 + - - +
146A GLN* 3.9 12.8 - - + +
147A VAL* 3.2 35.1 - - - +
148A GLY 4.2 3.4 - - - +
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Residues in contact with SER 64 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60A LEU 2.8 18.8 + - - -
61A THR* 3.3 7.8 + - - -
63A ALA* 1.3 75.6 - - - +
65A ARG* 1.3 58.0 + - - +
67A ALA* 3.3 9.0 + - - +
68A ASN* 2.8 43.6 + - - -
436A ILE* 5.2 14.6 - - - +
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Residues in contact with ARG 65 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61A THR* 3.0 36.3 + - - +
62A GLN* 3.4 29.9 - - - +
64A SER* 1.3 76.1 - - - +
66A ASN* 1.3 54.0 + - - +
68A ASN* 3.0 13.2 + - - +
69A ASP* 2.7 41.1 + - - +
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Residues in contact with ASN 66 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A GLN* 2.7 35.6 + - - +
63A ALA* 3.3 5.4 - - - +
65A ARG* 1.3 70.8 - - - +
67A ALA* 1.3 58.2 - - - +
69A ASP* 3.1 20.9 + - - +
70A GLY 2.7 28.9 + - - -
145A ILE* 3.3 20.4 - - + +
146A GLN* 3.5 28.2 + - - +
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Residues in contact with ALA 67 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63A ALA 2.6 19.8 + - - +
64A SER* 3.3 11.7 - - - +
66A ASN* 1.3 74.9 - - - +
68A ASN* 1.3 51.4 + - - +
70A GLY* 3.0 2.4 + - - -
71A ILE* 2.6 40.7 + - - +
147A VAL* 4.1 22.0 - - + +
432A PHE* 4.2 9.6 - - + -
436A ILE* 4.0 26.5 - - + -
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Residues in contact with ASN 68 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A SER* 2.8 31.9 + - - -
65A ARG* 3.2 12.9 - - - +
67A ALA* 1.3 75.1 - - - +
69A ASP* 1.3 56.1 + - - +
71A ILE* 3.6 19.0 - - - +
72A SER* 2.7 34.7 + - - -
436A ILE* 5.2 4.0 - - - +
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Residues in contact with ASP 69 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A ARG* 2.7 28.1 + - - +
66A ASN* 3.2 22.9 - - - +
68A ASN* 1.3 72.8 - - - +
70A GLY* 1.3 53.8 + - - +
72A SER* 3.1 2.8 + - - -
73A ILE* 2.8 43.9 + - + +
131A PHE* 4.0 24.5 - - + -
132A ASN* 5.9 0.3 + - - -
145A ILE* 5.4 4.5 - - + -
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Residues in contact with GLY 70 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A ASN 2.7 14.4 + - - -
67A ALA 3.4 3.4 - - - -
69A ASP* 1.3 75.8 - - - +
71A ILE* 1.3 50.9 + - - +
73A ILE* 3.1 7.5 + - - +
74A ALA* 2.7 35.0 + - - +
145A ILE* 4.6 7.2 - - - +
157A ILE* 3.8 12.7 - - - +
432A PHE* 3.8 22.7 - - - -
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Residues in contact with ILE 71 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67A ALA 2.6 22.1 + - - +
68A ASN* 3.6 18.6 - - - +
70A GLY* 1.3 70.4 - - - +
72A SER* 1.3 59.6 + - - +
74A ALA* 3.1 8.7 + - - +
75A GLN* 2.8 54.0 + - + +
429A GLN* 4.7 11.0 - - + +
432A PHE* 3.7 20.4 - - + -
433A ASN* 3.6 23.6 - - - +
436A ILE* 3.9 20.6 - - + -
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Residues in contact with SER 72 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A ASN 2.7 21.7 + - - -
69A ASP* 3.7 4.9 - - - -
71A ILE* 1.3 75.0 - - - +
73A ILE* 1.3 50.5 + - - +
75A GLN* 3.0 18.2 + - - +
76A THR* 2.6 48.3 + - - +
131A PHE* 4.0 16.4 - - - -
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Residues in contact with ILE 73 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A ASP* 2.8 27.3 + - + +
70A GLY* 3.5 7.9 - - - +
72A SER* 1.3 69.3 - - - +
74A ALA* 1.3 65.2 + - - +
76A THR* 2.7 19.1 + - - +
77A THR* 2.9 16.8 + - - +
131A PHE* 3.0 41.7 - - + +
134A VAL* 5.5 2.9 - - + -
136A VAL* 3.9 26.2 - - + -
143A LEU* 4.4 25.1 - - + -
145A ILE* 5.0 7.2 - - + -
157A ILE* 4.6 10.5 - - + +
159A LEU* 4.9 6.3 - - + -
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Residues in contact with ALA 74 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70A GLY 2.7 17.2 + - - +
71A ILE* 3.1 11.6 + - - +
73A ILE* 1.3 76.6 - - - +
75A GLN* 1.3 63.7 + - - +
77A THR* 3.1 11.3 + - - -
78A GLU* 3.2 21.7 + - - +
157A ILE* 4.9 5.6 - - + +
425A LEU* 3.7 31.1 - - + +
428A VAL* 4.9 4.5 - - + -
429A GLN* 4.0 15.5 - - + +
432A PHE* 4.9 2.7 - - + -
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Residues in contact with GLN 75 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A ILE* 2.8 34.3 + - + +
72A SER* 3.3 21.7 + - - +
74A ALA* 1.3 74.2 - - - +
76A THR* 1.3 56.9 + - + +
78A GLU* 3.4 11.5 + - - +
79A GLY* 2.8 25.1 + - - -
429A GLN* 4.6 13.5 + - + +
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Residues in contact with THR 76 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A SER* 2.6 33.4 + - - +
73A ILE* 2.7 33.8 + - - +
75A GLN* 1.3 69.8 - - + +
77A THR* 1.3 60.8 + - - +
79A GLY* 2.9 3.2 + - - +
80A ALA* 2.9 32.2 + - - +
129A THR* 4.9 6.1 - - - +
130A GLN 5.5 4.5 - - - +
131A PHE* 4.3 21.2 - - + +
136A VAL* 4.9 3.3 - - - +
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Residues in contact with THR 77 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A ILE* 2.9 20.1 + - - +
74A ALA* 3.6 4.5 - - - -
76A THR* 1.3 75.5 + - - +
78A GLU* 1.3 56.5 + - - +
80A ALA* 3.9 2.7 - - - +
81A LEU* 2.9 43.4 + - + +
136A VAL* 3.4 30.7 - - - +
137A LEU* 4.4 9.9 - - + +
159A LEU* 3.7 15.3 - - + +
425A LEU* 3.0 36.3 - - + -
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Residues in contact with GLU 78 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74A ALA 3.2 19.8 + - - +
75A GLN* 3.6 7.7 - - - +
77A THR* 1.3 72.5 - - - +
79A GLY* 1.3 59.7 + - - +
81A LEU* 3.5 9.2 - - - +
82A ASN* 2.8 42.0 + - - +
422A ARG* 4.2 17.0 + - + +
425A LEU* 3.3 18.0 - - + +
426A GLY* 3.0 31.4 + - - -
429A GLN* 3.1 21.8 + - - -
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Residues in contact with GLY 79 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A GLN 2.8 15.9 + - - -
76A THR* 2.9 7.1 + - - -
78A GLU* 1.3 76.9 - - - +
80A ALA* 1.3 60.1 + - - +
82A ASN* 3.1 27.9 + - - +
83A GLU* 3.8 6.9 + - - +
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Residues in contact with ALA 80 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A THR 2.9 13.0 + - - +
77A THR 4.0 2.9 - - - +
79A GLY* 1.3 71.9 - - - -
81A LEU* 1.3 62.5 + - - +
83A GLU* 3.3 21.8 - - - +
84A ILE* 3.7 1.0 - - - +
125A VAL* 3.4 15.1 - - + +
129A THR* 3.1 44.4 - - + +
137A LEU* 4.2 7.6 - - + -
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Residues in contact with LEU 81 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A THR* 2.9 40.3 + - + +
78A GLU* 3.5 5.6 - - - +
79A GLY 3.1 0.2 - - - -
80A ALA* 1.3 77.3 - - - +
82A ASN* 1.3 53.6 + - - +
84A ILE* 2.7 43.7 + - + +
85A ASN 3.1 0.2 + - - -
137A LEU* 3.7 23.8 - - + -
162A ILE* 4.3 7.0 - - + -
418A VAL* 3.7 25.1 - - + +
421A LEU* 4.9 6.7 - - + -
422A ARG* 2.4 51.8 + - + +
425A LEU* 4.4 6.3 - - + -
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Residues in contact with ASN 82 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78A GLU* 2.8 38.7 + - - +
79A GLY* 3.1 14.3 + - - +
81A LEU* 1.3 72.7 - - - +
83A GLU* 1.3 53.8 + - + +
85A ASN* 3.3 5.2 + - - +
86A ASN* 2.7 42.5 + - - +
422A ARG* 3.9 18.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 83 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLY 3.8 6.0 + - - +
80A ALA* 3.3 15.7 - - - +
82A ASN* 1.3 73.9 - - + +
84A ILE* 1.3 53.3 + - - +
86A ASN* 3.1 23.1 + - - +
87A ASN* 2.7 56.4 + - - +
121A GLU* 4.9 7.1 - - - +
125A VAL* 4.8 9.6 - - + -
----------------------------------------------------------
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Residues in contact with ILE 84 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A ALA 3.7 9.9 - - - +
81A LEU* 2.7 39.4 + - + +
83A GLU* 1.3 71.7 - - - +
85A ASN* 1.3 58.6 + - - +
87A ASN* 3.2 8.7 + - - +
88A LEU* 2.9 42.5 + - + +
122A ILE* 3.9 25.6 - - + +
125A VAL* 3.7 27.8 - - + -
126A SER 5.0 0.4 - - - +
137A LEU* 4.0 10.1 - - + -
162A ILE* 4.2 19.3 - - + +
167A LEU* 4.4 7.2 - - + -
418A VAL* 4.6 5.8 - - + -
422A ARG* 4.1 1.6 - - - +
----------------------------------------------------------
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Residues in contact with ASN 85 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A LEU 3.1 0.2 + - - -
82A ASN* 3.4 6.3 - - - +
84A ILE* 1.3 72.4 - - - +
86A ASN* 1.3 59.0 + - - +
87A ASN 3.1 0.3 + - - -
88A LEU 3.2 0.5 + - - -
89A GLN* 2.8 71.2 + - - +
415A LEU* 3.9 24.2 - - - +
418A VAL* 4.6 1.6 - - - +
419A ASP* 3.2 22.4 + - - -
422A ARG* 2.6 45.2 - - - +
----------------------------------------------------------
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Residues in contact with ASN 86 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A ASN* 2.7 34.4 + - - +
83A GLU* 3.1 32.2 + - - +
85A ASN* 1.3 77.7 - - - +
87A ASN* 1.3 59.3 + - - +
89A GLN* 4.5 10.4 - - - +
90A ARG* 3.6 16.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 87 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A GLU* 2.7 43.3 + - - +
84A ILE* 3.6 9.3 - - - +
85A ASN 3.1 0.2 - - - -
86A ASN* 1.3 74.0 - - - +
88A LEU* 1.3 64.9 + - - +
90A ARG* 3.2 9.5 - - - +
91A VAL* 3.1 23.4 + - - +
118A ARG* 3.3 37.6 + - + +
121A GLU* 3.8 23.5 - - - +
122A ILE* 3.8 20.6 - - + +
125A VAL* 4.9 2.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 88 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84A ILE* 2.9 23.1 + - + +
87A ASN* 1.3 74.6 - - - +
89A GLN* 1.3 61.0 + - - +
91A VAL* 2.8 26.2 + - + +
92A ARG* 2.8 16.0 + - - +
119A LEU* 4.3 7.2 - - + -
122A ILE* 3.2 24.2 - - + +
167A LEU* 3.7 27.8 - - + -
169A LEU* 3.1 35.0 - - + -
411A ILE* 4.1 7.7 - - + +
414A ALA* 5.0 2.7 - - + -
415A LEU* 3.8 30.1 - - + -
418A VAL* 4.3 2.9 - - + -
----------------------------------------------------------
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Residues in contact with GLN 89 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A ASN* 2.8 58.6 + - - +
86A ASN* 4.3 9.6 - - - +
88A LEU* 1.3 72.4 - - - +
90A ARG* 1.3 57.3 + - - +
92A ARG* 2.9 37.3 - - - +
93A GLU* 3.0 16.5 + - - +
415A LEU* 3.8 11.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 90 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A ASN 3.6 12.5 + - - +
87A ASN* 3.2 14.0 + - - +
89A GLN* 1.3 75.4 - - - +
91A VAL* 1.3 65.3 + - - +
93A GLU* 2.9 52.2 + - - +
94A LEU* 3.0 22.2 + - - +
97A GLN* 5.7 3.2 - - - +
114A GLU* 2.7 33.1 + - - +
118A ARG* 4.1 8.5 - - - -
----------------------------------------------------------
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Residues in contact with VAL 91 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A ASN 3.1 16.2 + - - +
88A LEU* 2.8 20.3 + - + +
90A ARG* 1.3 76.8 - - - +
92A ARG* 1.3 47.8 + - - +
94A LEU* 2.7 30.0 + - - +
95A ALA* 2.7 16.0 + - - +
115A ILE* 3.9 23.6 - - + +
118A ARG* 3.5 26.7 - - + -
119A LEU* 4.7 10.8 - - + -
122A ILE* 5.6 0.2 - - + -
172A LEU* 3.7 31.0 - - + -
411A ILE* 4.2 8.5 - - + -
----------------------------------------------------------
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Residues in contact with ARG 92 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88A LEU 2.8 7.5 + - - +
89A GLN* 2.9 21.1 - - - +
91A VAL* 1.3 74.8 - - - +
93A GLU* 1.3 54.2 + - + +
95A ALA* 2.8 28.9 + - - +
96A VAL* 2.9 19.0 + - + +
408A LEU* 4.0 6.9 - - + +
411A ILE* 3.4 27.0 - - + +
412A ASP* 2.6 56.5 + - - +
415A LEU* 3.1 42.1 - - - +
----------------------------------------------------------
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Residues in contact with GLU 93 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A GLN* 3.0 17.2 + - - +
90A ARG* 2.9 49.0 + - - +
92A ARG* 1.3 77.4 - - + +
94A LEU* 1.3 54.5 + - - +
96A VAL* 3.5 9.2 + - - +
97A GLN* 3.2 31.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 94 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ARG* 3.0 30.5 + - - +
91A VAL* 2.7 18.0 + - - +
93A GLU* 1.3 73.6 - - - +
95A ALA* 1.3 54.3 - - - +
97A GLN* 3.4 17.1 - - - +
98A SER* 2.8 36.1 + - - -
111A ILE* 3.6 25.0 - - + +
114A GLU* 3.1 41.7 - - + +
115A ILE* 3.3 34.1 - - + +
----------------------------------------------------------
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Residues in contact with ALA 95 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A VAL* 2.7 10.7 + - + +
92A ARG 2.8 11.2 + - - +
94A LEU* 1.3 75.3 - - - +
96A VAL* 1.3 62.8 + - - +
98A SER* 3.3 19.3 + - - -
99A ALA* 3.4 9.4 + - - +
115A ILE* 5.0 1.5 - - + +
172A LEU* 6.2 0.4 - - + -
174A VAL* 5.3 5.4 - - + -
407A PRO* 4.9 11.3 - - + +
408A LEU* 3.1 30.2 - - + +
411A ILE* 3.7 17.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 96 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A ARG* 2.9 17.9 + - + +
93A GLU* 3.7 8.5 - - - +
94A LEU 3.2 0.2 - - - -
95A ALA* 1.3 75.8 - - - +
97A GLN* 1.3 66.1 + - + +
98A SER 3.1 1.2 + - - -
99A ALA* 3.1 18.5 + - + +
100A ASN* 3.6 9.7 + - - +
408A LEU* 4.5 18.4 - - + -
----------------------------------------------------------
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Residues in contact with GLN 97 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ARG* 5.7 3.6 - - - +
93A GLU* 3.2 20.2 + - + +
94A LEU* 3.4 21.1 - - + +
96A VAL* 1.3 80.1 - - + +
98A SER* 1.3 50.6 + - - +
100A ASN* 3.1 18.5 + - - +
103A ASN* 2.7 32.6 + - - +
111A ILE* 4.1 17.3 - - + +
----------------------------------------------------------
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Residues in contact with SER 98 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A LEU 2.8 17.6 + - - -
95A ALA* 3.3 9.2 + - - -
96A VAL 3.1 0.4 - - - -
97A GLN* 1.3 73.1 - - - +
99A ALA* 1.3 56.2 + - - +
100A ASN 2.7 27.1 + - - +
103A ASN* 3.4 6.6 + - - +
108A LEU* 4.0 13.0 - - - +
111A ILE* 4.3 7.4 - - - -
174A VAL* 3.5 40.2 - - - +
407A PRO* 5.3 4.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 99 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A ALA 3.4 7.5 + - - +
96A VAL* 3.1 13.4 + - + +
98A SER* 1.3 78.8 + - - +
100A ASN* 1.3 60.3 + - - +
101A SER* 3.2 8.8 + - - -
408A LEU* 6.0 4.0 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il