Contacts of the helix formed by residues 1 - 31 (chain H) in PDB entry 1VZJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 1 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2H THR* 1.3 61.9 + - - +
3H LEU* 2.9 21.9 + - - +
4H ASP* 2.6 45.5 + - - +
5H GLU* 2.9 30.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 2 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1H ASP* 1.3 82.3 + - - +
3H LEU* 1.3 69.3 + - - +
5H GLU* 3.8 6.4 - - - +
6H ALA* 3.0 24.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 3 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1H ASP* 2.9 9.6 + - - +
2H THR* 1.3 88.2 - - - +
4H ASP* 1.3 57.2 + - - +
5H GLU 3.1 1.1 - - - -
6H ALA* 3.4 7.8 - - + +
7H GLU* 2.7 36.1 + - - +
14J PHE* 5.2 4.0 - - + +
15J PHE* 3.9 37.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 4 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1H ASP* 2.6 45.2 + - - +
3H LEU* 1.3 75.7 - - - +
5H GLU* 1.3 57.1 - - - +
7H GLU* 3.3 15.2 + - - +
8H ARG* 2.9 31.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 5 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1H ASP 2.9 19.1 + - - +
2H THR* 3.8 7.4 - - - +
4H ASP* 1.3 78.6 - - - +
6H ALA* 1.3 56.4 + - - +
8H ARG* 3.4 36.8 + - - +
9H GLN* 2.9 34.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 6 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2H THR 3.0 20.2 + - - +
3H LEU* 3.1 14.3 + - + +
5H GLU* 1.3 75.8 - - - +
7H GLU* 1.3 60.5 + - - +
9H GLN* 3.4 7.1 + - - +
10H TRP* 2.9 31.2 + - - +
14J PHE 4.3 8.0 - - - +
15J PHE* 4.2 11.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 7 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2G THR* 3.8 13.9 - - - +
3H LEU 2.7 18.8 + - - +
4H ASP* 3.7 14.8 - - - +
6H ALA* 1.3 74.2 - - - +
8H ARG* 1.3 61.4 + - - +
10H TRP* 3.8 0.3 - - - +
11H LYS* 2.7 65.4 + - + +
15J PHE* 3.6 40.3 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 8 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4H ASP 2.9 18.4 + - - +
5H GLU* 3.4 27.2 + - - +
7H GLU* 1.3 78.6 - - - +
9H GLN* 1.3 97.7 + - - +
11H LYS* 4.2 4.5 - - - +
12H ALA* 3.3 28.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 9 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5H GLU* 2.9 22.2 + - - +
6H ALA* 3.9 5.9 - - - +
8H ARG* 1.3 101.4 - - - +
10H TRP* 1.3 65.8 + - - +
12H ALA* 3.5 3.0 + - - +
13H GLU* 3.0 36.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TRP 10 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7E GLU* 6.0 4.0 - - - -
6G ALA* 3.8 25.6 - - + -
9G GLN* 6.4 0.2 - - - -
10G TRP* 4.1 7.0 - + + -
6H ALA 2.9 18.6 + - - +
7H GLU 3.8 2.7 - - - +
9H GLN* 1.3 79.1 - - - +
11H LYS* 1.3 79.0 + - + +
13H GLU* 3.5 2.4 - - - +
14H PHE* 2.6 70.4 + + + +
10J PHE* 3.2 26.5 - + - -
11J PRO* 3.0 26.4 + - + -
12J PRO 3.3 7.6 + - - -
13J PRO* 3.4 45.5 - - + -
14J PHE 4.6 3.1 - - - +
15J PHE* 4.1 12.1 - + + -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 11 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2G THR* 4.1 15.4 + - - +
6G ALA* 5.0 6.7 - - - -
7H GLU* 2.7 52.5 + - + +
8H ARG* 4.2 4.7 - - - +
10H TRP* 1.3 95.9 - - + +
12H ALA* 1.3 62.0 + - - +
14H PHE* 3.1 2.6 + - - +
15H HIS* 2.7 45.4 + - + +
15J PHE* 4.2 10.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 12 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8H ARG* 3.3 24.1 + - + +
9H GLN* 3.8 4.0 - - - +
10H TRP 3.2 0.4 - - - -
11H LYS* 1.3 80.3 - - - +
13H GLU* 1.3 58.9 + - + +
15H HIS* 3.4 6.0 + - - +
16H ARG* 3.1 34.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 13 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10E TRP* 5.7 4.5 - - + -
9H GLN* 3.0 27.7 + - + +
10H TRP* 3.9 1.6 - - - +
12H ALA* 1.3 75.8 - - + +
14H PHE* 1.3 63.4 + - - +
16H ARG* 3.3 40.7 + - - +
17H TRP* 3.0 23.7 + - - +
10J PHE* 3.4 19.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 14 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9G GLN* 3.6 48.7 - - + -
10G TRP* 4.0 12.6 - + - -
13G GLU* 4.1 9.9 - - + -
10H TRP* 2.6 53.8 + + + +
11H LYS 3.1 4.2 + - - +
13H GLU* 1.3 72.5 - - - +
15H HIS* 1.3 77.7 + + - +
17H TRP* 2.8 41.8 + + - +
18H SER* 3.0 20.7 + - - -
10J PHE* 3.7 27.3 - + + -
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 15 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9G GLN* 3.9 19.1 + - - -
10H TRP* 6.1 0.2 - + - -
11H LYS* 2.7 40.0 + - + +
12H ALA* 3.9 4.6 - - - +
14H PHE* 1.3 91.3 - + - +
16H ARG* 1.3 65.3 + - - +
18H SER* 3.2 20.7 + - - -
19H SER* 3.2 17.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 16 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14E PHE* 6.3 0.7 - - - -
12H ALA* 3.1 23.3 + - - +
13H GLU* 3.3 44.5 + - - +
15H HIS* 1.3 76.9 - - - +
17H TRP* 1.3 60.7 + - - +
19H SER* 3.4 13.7 + - - -
20H TYR* 3.1 41.9 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with TRP 17 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10E TRP* 3.7 20.4 - + + -
14E PHE* 4.4 14.4 - + + -
10G TRP* 5.9 0.9 - + - -
13G GLU* 3.2 35.7 - - + -
17G TRP* 4.1 5.2 - + - -
13H GLU* 3.0 13.4 + - - +
14H PHE* 2.8 20.3 + + - +
16H ARG* 1.3 77.7 - - - +
18H SER* 1.3 71.0 + - - +
20H TYR* 3.3 15.3 + - + +
21H MSE 3.3 38.4 + - + +
7J PRO* 3.7 13.1 - - + +
8J PRO 3.0 21.6 + - - -
9J LEU* 4.0 17.3 - - + -
10J PHE* 3.6 44.9 - + + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 18 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13G GLU* 3.8 26.2 + - - +
14H PHE* 3.0 22.1 + - - -
15H HIS* 3.2 15.9 + - - -
17H TRP* 1.3 82.3 - - - +
19H SER* 1.3 60.4 + - - +
21H MSE 3.0 8.0 + - - +
22H VAL* 3.0 31.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 19 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1D ASP 5.1 14.6 + - - -
4D ASP* 5.5 1.0 - - - +
5D GLU* 5.6 3.3 + - - -
15H HIS 3.2 12.8 + - - -
16H ARG* 3.6 11.6 - - - -
17H TRP 3.2 0.2 - - - -
18H SER* 1.3 78.5 - - - +
20H TYR* 1.3 60.8 + - - +
22H VAL* 3.3 9.3 + - - +
23H HIS* 2.8 28.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 20 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14E PHE* 3.8 34.4 - + + -
15E HIS* 5.6 3.1 - - - -
17E TRP* 3.9 31.0 - + + -
18E SER* 4.7 8.1 + - - -
16H ARG* 3.1 43.5 + - + -
17H TRP* 3.3 10.5 + - + +
18H SER 3.2 0.6 - - - -
19H SER* 1.3 78.4 - - - +
21H MSE 1.3 61.6 + - - +
23H HIS* 3.7 14.2 - + + +
24H TRP* 2.8 30.5 + - - +
7J PRO* 4.5 4.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with MSE 21 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13G GLU* 4.3 12.3 - - - +
16G ARG* 5.6 2.2 - - - -
17G TRP* 3.7 20.4 - - + -
20G TYR* 3.9 27.2 - - + -
17H TRP* 3.3 45.5 + - + +
18H SER* 3.0 12.6 + - - +
20H TYR* 1.3 76.3 - - - +
22H VAL* 1.3 57.9 + - + +
24H TRP* 3.2 2.9 + - + +
25H LYS* 2.7 37.7 + - - +
6J PRO* 3.2 20.4 - - + -
7J PRO* 2.8 42.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 22 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4D ASP* 3.8 30.7 - - + +
5D GLU* 4.0 22.2 - - - +
8D ARG* 3.9 30.7 - - + -
13G GLU* 6.0 1.1 - - - +
20G TYR* 5.4 2.2 - - - +
18H SER* 3.0 20.1 + - - +
19H SER* 3.5 9.9 - - - +
21H MSE 1.3 77.1 - - + +
23H HIS* 1.3 62.2 + - - +
25H LYS* 3.4 5.8 + - - +
26H ASN* 3.1 24.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 23 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1D ASP 6.1 0.2 - - - +
4D ASP* 2.5 41.4 + - - +
17E TRP* 5.9 3.6 - + - -
21E MSE 6.1 4.0 - - - -
19H SER 2.8 17.8 + - - +
20H TYR* 3.8 17.0 - + + +
22H VAL* 1.3 78.2 - - - +
24H TRP* 1.3 63.9 + - - +
26H ASN* 3.3 3.8 + - - +
27H GLN* 3.2 59.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TRP 24 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17E TRP* 3.9 6.5 - + + -
21E MSE 3.8 24.7 - - - -
20G TYR* 3.4 53.6 - + + -
24G TRP* 4.0 5.2 - + + -
20H TYR 2.8 19.9 + - - +
21H MSE 3.6 2.0 - - + +
23H HIS* 1.3 79.0 - - - +
25H LYS* 1.3 95.1 + - + +
27H GLN* 3.0 8.2 + - + +
28H PHE* 2.8 60.6 + + + +
3J THR* 3.4 12.3 + - - -
4J PRO 3.0 20.6 + - - -
5J PRO 3.3 11.9 + - - -
6J PRO* 3.5 30.7 - - + -
7J PRO* 3.9 8.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 25 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8D ARG* 6.4 2.7 - - + -
20G TYR* 3.2 49.8 + - + +
23G HIS* 6.0 6.5 - - - -
21H MSE 2.7 20.8 + - - +
22H VAL* 3.8 6.3 - - - +
24H TRP* 1.3 86.6 - - + +
26H ASN* 1.3 63.0 + - - +
28H PHE* 3.7 12.5 - - + +
29H ASP* 3.0 64.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 26 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C THR* 5.5 0.5 + - - -
4D ASP* 3.0 53.4 + - - +
7D GLU* 3.6 37.7 + - - +
8D ARG* 4.1 14.7 + - - +
11D LYS* 4.2 7.3 + - - +
22H VAL* 3.1 16.8 + - - +
23H HIS 3.6 7.2 - - - +
24H TRP 3.1 0.2 - - - -
25H LYS* 1.3 77.3 - - - +
27H GLN* 1.3 71.0 + - - +
29H ASP* 3.6 7.0 + - - +
30H HIS* 3.6 16.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 27 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2C THR* 6.3 0.6 - - - +
4D ASP* 4.6 2.6 + - - -
7D GLU* 5.6 1.6 + - - -
21E MSE 5.7 4.9 - - + -
24E TRP* 3.9 34.5 - - + -
25E LYS* 6.0 1.6 - - - +
23H HIS* 3.2 46.8 + - + +
24H TRP* 3.0 8.7 + - + +
26H ASN* 1.3 83.2 - - - +
28H PHE* 1.3 63.4 + - - +
30H HIS* 3.2 21.5 + - - +
31H TYR* 3.8 3.6 + - - +
3J THR* 4.1 10.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 28 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20G TYR* 6.1 0.2 - - - -
23G HIS* 3.9 19.3 - + + -
24G TRP* 3.7 40.2 - + + -
27G GLN* 3.4 35.0 + - - -
24H TRP* 2.8 50.6 + + + +
25H LYS* 3.7 14.6 - - - +
27H GLN* 1.3 77.9 - - - +
29H ASP* 1.3 73.9 + - - +
31H TYR* 3.0 24.3 + - + +
32H SER* 5.2 2.7 - - - -
2J LEU* 4.1 9.0 - - + -
3J THR* 3.7 19.7 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 29 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11D LYS* 4.2 22.0 + - + +
25H LYS* 3.0 53.0 + - - +
26H ASN* 4.0 6.6 - - - +
27H GLN 3.3 0.4 - - - -
28H PHE* 1.3 77.6 - - - +
30H HIS* 1.3 66.3 + - - +
31H TYR 2.9 2.9 + - - -
32H SER* 3.0 30.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 30 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1C ASP* 4.0 8.5 + - - -
2C THR* 3.3 48.2 + - - +
5C GLU* 4.7 13.8 - - + +
11D LYS* 5.1 4.1 + - - +
24E TRP* 6.4 0.4 - - + -
28E PHE* 5.8 9.7 - + - -
26H ASN 3.6 8.6 + - - +
27H GLN* 3.2 15.3 + - - +
28H PHE 3.2 0.4 - - - -
29H ASP* 1.3 78.3 - - - +
31H TYR* 1.3 60.1 + + + +
32H SER 3.3 4.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 31 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24E TRP* 4.9 11.9 - + + -
27E GLN* 4.8 8.8 + - - -
28E PHE* 5.4 11.0 - + - -
27G GLN* 2.7 30.5 + - - +
31G TYR* 3.3 50.5 + + - -
27H GLN 3.8 3.6 + - - +
28H PHE* 3.0 14.3 + - + +
29H ASP 2.9 1.4 - - - -
30H HIS* 1.3 79.2 - + + +
32H SER* 1.3 53.6 + - - +
1J LEU* 3.9 16.5 + - - +
2J LEU* 3.3 40.6 - - + -
3J THR* 5.4 3.1 - - + -
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il