Contacts of the helix formed by residues 315 - 385 (chain A) in PDB entry 1X8Y
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 315 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A ALA* 1.3 78.4 - - + +
316A LYS* 1.3 57.1 + - - +
317A GLU 3.5 2.2 - - - -
318A ALA* 3.5 11.1 - - + +
319A LYS* 2.7 41.3 + - + +
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Residues in contact with LYS 316 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313A LEU* 3.9 19.5 + - + +
314A ALA 3.7 0.4 - - - -
315A ALA* 1.3 75.8 - - - +
317A GLU* 1.3 57.9 + - - +
318A ALA 3.1 4.0 - - - -
319A LYS* 4.4 3.1 - - - +
320A LEU* 3.3 31.6 + - + +
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Residues in contact with GLU 317 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313A LEU* 3.7 28.2 + - + +
316A LYS* 1.3 76.7 - - - +
318A ALA* 1.3 58.9 + - - +
320A LEU* 4.3 8.4 - - + +
321A ARG* 4.3 11.6 + - - +
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Residues in contact with ALA 318 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313A LEU 4.9 0.8 + - - -
314A ALA 4.4 5.6 - - - +
315A ALA* 3.5 19.7 - - + +
316A LYS 3.1 0.4 - - - -
317A GLU* 1.3 79.0 - - - +
319A LYS* 1.3 60.9 + - - +
320A LEU 3.3 1.6 - - - -
321A ARG* 3.4 14.3 - - - +
322A ASP* 3.2 17.9 - - - -
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Residues in contact with LYS 319 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A ALA* 2.7 25.1 + - + +
316A LYS* 4.5 3.8 - - - +
318A ALA* 1.3 69.1 - - - +
320A LEU* 1.3 59.9 + - - +
321A ARG 3.2 1.6 - - - -
322A ASP* 3.2 14.6 + - + +
323A LEU* 3.0 27.8 + - - +
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Residues in contact with LEU 320 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A LYS* 3.3 19.5 + - + +
317A GLU* 4.6 8.5 - - + +
318A ALA 3.3 0.2 - - - -
319A LYS* 1.3 78.2 - - - +
321A ARG* 1.3 60.3 + - - +
323A LEU* 3.6 9.0 - - + +
324A GLU* 3.2 26.3 + - - +
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Residues in contact with ARG 321 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A GLU 4.3 8.1 + - - +
318A ALA* 3.4 15.3 + - - +
320A LEU* 1.3 78.1 - - - +
322A ASP* 1.3 59.3 + - - +
324A GLU* 3.4 4.6 + - - +
325A ASP* 3.0 49.6 + - - +
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Residues in contact with ASP 322 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A ALA 3.2 19.7 - - - -
319A LYS* 3.6 18.2 - - + +
321A ARG* 1.3 73.2 - - - +
323A LEU* 1.3 61.6 + - - +
325A ASP* 4.0 10.8 - - - +
326A SER* 3.2 23.0 + - - -
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Residues in contact with LEU 323 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319A LYS 3.0 13.3 + - - +
320A LEU* 3.6 15.3 - - + +
321A ARG 3.2 0.2 - - - -
322A ASP* 1.3 77.0 - - - +
324A GLU* 1.3 60.6 + - + +
326A SER* 3.2 8.8 + - - +
327A LEU* 2.9 31.3 + - + +
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Residues in contact with GLU 324 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320A LEU 3.2 14.8 + - - +
321A ARG* 3.4 5.1 + - - +
323A LEU* 1.3 77.0 - - + +
325A ASP* 1.3 61.9 + - - +
327A LEU* 4.1 15.8 - - + +
328A ALA* 3.1 29.3 + - - +
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Residues in contact with ASP 325 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG* 3.0 34.9 + - - +
322A ASP* 4.0 8.9 - - - +
324A GLU* 1.3 79.3 - - - +
326A SER* 1.3 57.9 + - - +
328A ALA* 3.6 5.7 - - - +
329A ARG* 3.0 26.9 + - - +
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Residues in contact with SER 326 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322A ASP 3.2 12.4 + - - -
323A LEU* 3.2 14.5 + - - +
325A ASP* 1.3 76.7 - - - +
327A LEU* 1.3 59.5 + - - +
329A ARG* 3.6 9.9 - - - +
330A GLU* 3.0 38.1 + - - +
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Residues in contact with LEU 327 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323A LEU* 2.9 18.9 + - + +
324A GLU* 4.1 16.2 - - + +
325A ASP 3.3 0.2 - - - -
326A SER* 1.3 76.6 + - - +
328A ALA* 1.3 62.7 + - - +
329A ARG 3.2 0.2 - - - -
330A GLU* 3.5 6.4 + - + +
331A ARG* 3.1 62.8 + - + +
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Residues in contact with ALA 328 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324A GLU 3.1 20.5 + - - +
325A ASP* 3.6 6.7 - - - +
327A LEU* 1.3 78.1 - - - +
329A ARG* 1.3 56.6 + - - +
331A ARG* 3.7 11.1 - - - +
332A ASP* 3.1 27.5 + - - +
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Residues in contact with ARG 329 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A ASP 3.0 18.0 + - - +
326A SER* 3.8 10.1 - - - +
327A LEU 3.2 0.2 - - - -
328A ALA* 1.3 76.3 - - - +
330A GLU* 1.3 59.9 + - - +
332A ASP* 3.5 5.7 + - + +
333A THR* 2.9 40.1 + - - +
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Residues in contact with GLU 330 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326A SER* 3.0 27.9 + - - +
327A LEU* 3.9 7.6 - - + +
328A ALA 3.5 0.2 - - - -
329A ARG* 1.3 72.8 - - - +
331A ARG* 1.3 58.3 + - + +
333A THR* 3.2 5.9 + - - -
334A SER* 2.8 40.3 + - - -
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Residues in contact with ARG 331 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327A LEU* 3.1 57.9 + - + +
328A ALA* 3.7 9.7 - - - +
330A GLU* 1.3 76.7 - - - +
332A ASP* 1.3 63.1 + - - +
334A SER* 3.4 5.5 + - - -
335A ARG* 3.0 69.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 332 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A ALA 3.1 14.9 + - - +
329A ARG* 3.7 7.5 - - + +
330A GLU 3.3 0.2 - - - -
331A ARG* 1.3 80.0 - - - +
333A THR* 1.3 63.9 + - - +
335A ARG* 4.3 4.0 - - - +
336A ARG* 3.1 64.8 + - - +
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Residues in contact with THR 333 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329A ARG* 2.9 26.8 + - - +
330A GLU* 3.2 6.3 + - - -
332A ASP* 1.3 77.4 + - - +
334A SER* 1.3 59.5 + - - +
336A ARG* 3.9 18.6 + - - +
337A LEU* 3.0 38.2 + - + +
----------------------------------------------------------
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Residues in contact with SER 334 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330A GLU* 2.8 21.5 + - - -
331A ARG* 3.4 8.0 + - - -
333A THR* 1.3 78.2 - - - +
335A ARG* 1.3 63.2 + - - +
337A LEU* 3.8 7.8 - - - +
338A LEU* 2.8 40.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 335 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331A ARG* 3.0 65.8 + - - +
332A ASP* 4.3 3.4 - - - +
334A SER* 1.3 78.0 - - - +
336A ARG* 1.3 61.6 + - + +
338A LEU* 3.8 5.8 - - - +
339A ALA* 2.9 28.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 336 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A ASP* 3.1 48.3 + - - +
333A THR* 3.9 18.1 + - - +
335A ARG* 1.3 74.2 - - + +
337A LEU* 1.3 65.2 + - - +
339A ALA* 3.3 7.3 + - - +
340A GLU* 3.0 37.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 337 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333A THR* 3.0 25.3 + - + +
334A SER* 3.8 7.4 - - - +
336A ARG* 1.3 73.6 - - - +
338A LEU* 1.3 66.8 + - + +
340A GLU* 3.0 22.0 + - + +
341A LYS* 2.9 54.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 338 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334A SER* 2.8 30.8 + - - +
335A ARG* 3.8 6.7 - - - +
337A LEU* 1.3 74.7 - - + +
339A ALA* 1.3 62.7 + - - +
341A LYS* 3.1 13.6 + - + +
342A GLU* 2.9 49.9 + - + +
345A MET* 5.7 1.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 339 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335A ARG 2.9 18.3 + - - +
336A ARG* 3.4 9.9 - - - +
338A LEU* 1.3 75.1 - - - +
340A GLU* 1.3 63.1 + - + +
342A GLU* 3.3 6.2 + - - +
343A ARG* 3.0 23.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 340 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
336A ARG* 3.0 27.5 + - - +
337A LEU* 3.0 21.7 + - + +
339A ALA* 1.3 75.6 - - - +
341A LYS* 1.3 58.9 + - + +
343A ARG* 3.1 36.0 + - - +
344A GLU* 2.9 33.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 341 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337A LEU* 2.9 48.4 + - + +
338A LEU* 3.6 16.4 - - + +
340A GLU* 1.3 75.7 - - + +
342A GLU* 1.3 57.1 + - - +
344A GLU* 3.3 20.5 + - - +
345A MET* 2.8 46.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 342 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338A LEU* 2.9 36.2 + - + +
339A ALA* 3.8 6.3 - - - +
341A LYS* 1.3 73.9 - - - +
343A ARG* 1.3 64.0 + - - +
345A MET* 3.4 25.4 - - - +
346A ALA* 3.0 25.3 + - - +
349A ARG* 4.8 10.4 + - - -
----------------------------------------------------------
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Residues in contact with ARG 343 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A ALA 3.0 13.0 + - - +
340A GLU* 3.1 54.7 + - - +
342A GLU* 1.3 75.6 - - - +
344A GLU* 1.3 70.9 + - - +
346A ALA* 3.4 5.7 + - - +
347A GLU* 3.0 49.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU 344 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340A GLU* 2.9 19.0 + - - +
341A LYS* 3.6 21.8 + - - +
343A ARG* 1.3 84.1 + - - +
345A MET* 1.3 57.3 + - + +
347A GLU* 3.4 16.3 + - - +
348A MET* 2.9 54.2 + - + +
351A ARG* 4.9 3.5 + - - +
----------------------------------------------------------
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Residues in contact with MET 345 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338A LEU* 5.7 1.6 - - + -
341A LYS* 2.8 38.5 + - + +
342A GLU* 3.4 34.1 - - - +
344A GLU* 1.3 74.7 - - + +
346A ALA* 1.3 57.2 + - - +
348A MET* 3.2 16.6 + - + +
349A ARG* 2.8 50.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA 346 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342A GLU 3.0 18.3 + - - +
343A ARG* 3.8 6.1 - - - +
345A MET* 1.3 72.7 - - - +
347A GLU* 1.3 60.6 + - + +
349A ARG* 3.5 23.8 + - - +
350A ALA* 3.0 28.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 347 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343A ARG* 3.0 50.7 + - + +
344A GLU* 3.5 14.8 - - - +
346A ALA* 1.3 71.7 - - + +
348A MET* 1.3 65.3 + - - +
350A ALA* 3.3 7.2 + - - +
351A ARG* 3.0 45.9 + - - +
----------------------------------------------------------
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Residues in contact with MET 348 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A GLU* 2.9 44.1 + - + +
345A MET* 3.2 20.2 + - + +
347A GLU* 1.3 76.3 - - - +
349A ARG* 1.3 57.7 + - + +
351A ARG* 3.2 27.6 + - - +
352A MET* 2.9 42.9 + - + +
----------------------------------------------------------
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Residues in contact with ARG 349 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342A GLU* 4.8 11.1 + - - -
345A MET* 2.8 40.9 + - + +
346A ALA* 3.7 30.7 - - - +
348A MET* 1.3 73.7 - - + +
350A ALA* 1.3 57.3 + - - +
352A MET* 3.6 13.2 + - - +
353A GLN* 3.1 27.4 + - - +
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Residues in contact with ALA 350 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
346A ALA 3.0 17.5 + - - +
347A GLU* 3.6 8.3 - - - +
348A MET 3.2 0.4 - - - -
349A ARG* 1.3 75.6 - - - +
351A ARG* 1.3 60.9 + - + +
353A GLN* 3.4 6.4 + - - +
354A GLN* 3.0 27.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 351 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344A GLU* 4.9 3.6 + - - +
347A GLU* 3.0 41.1 + - - +
348A MET* 3.5 44.3 + - - +
350A ALA* 1.3 72.3 - - + +
352A MET* 1.3 61.8 + - + +
354A GLN* 3.3 16.3 + - - +
355A GLN* 2.9 32.3 + - - +
----------------------------------------------------------
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Residues in contact with MET 352 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348A MET* 2.9 30.5 + - + +
349A ARG* 3.8 11.9 - - - +
351A ARG* 1.3 74.3 - - + +
353A GLN* 1.3 59.8 + - - +
355A GLN* 3.3 7.7 + - - +
356A LEU* 2.9 38.3 + - + +
----------------------------------------------------------
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Residues in contact with GLN 353 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
349A ARG 3.1 18.1 + - - +
350A ALA* 3.7 6.5 - - - +
352A MET* 1.3 77.0 - - - +
354A GLN* 1.3 62.5 + - - +
356A LEU* 3.2 22.8 + - - +
357A ASP* 3.1 44.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 354 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
350A ALA 3.0 16.9 + - - +
351A ARG* 3.7 16.4 + - - +
353A GLN* 1.3 75.8 - - - +
355A GLN* 1.3 60.2 + - - +
357A ASP* 3.2 11.7 + - + +
358A GLU* 2.9 53.0 + - + +
----------------------------------------------------------
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Residues in contact with GLN 355 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351A ARG 2.9 17.9 + - - +
352A MET* 3.5 8.3 - - - +
354A GLN* 1.3 79.9 - - - +
356A LEU* 1.3 56.5 + - + +
358A GLU* 3.5 18.7 + - - +
359A TYR* 3.1 30.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 356 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352A MET* 2.9 24.4 + - + +
353A GLN* 3.2 31.1 + - - +
355A GLN* 1.3 76.6 - - + +
357A ASP* 1.3 58.1 + - - +
359A TYR* 3.7 7.4 + - + +
360A GLN* 3.2 26.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 357 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353A GLN* 3.1 38.5 + - - +
354A GLN* 3.2 11.8 + - + +
356A LEU* 1.3 75.3 - - - +
358A GLU* 1.3 62.0 + - + +
360A GLN* 3.3 7.9 + - - +
361A GLU* 3.0 28.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 358 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354A GLN* 2.9 43.6 + - + +
355A GLN* 3.5 29.0 + - - +
357A ASP* 1.3 74.3 - - + +
359A TYR* 1.3 61.0 + - - +
361A GLU* 3.4 16.9 + - - +
362A LEU* 3.0 28.2 + - - +
----------------------------------------------------------
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Residues in contact with TYR 359 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355A GLN* 3.1 19.5 + - + +
356A LEU* 3.7 9.0 - - + +
357A ASP 3.3 0.2 - - - -
358A GLU* 1.3 76.4 - - - +
360A GLN* 1.3 58.2 + - + +
362A LEU* 3.1 14.6 + - + +
363A LEU* 2.8 58.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 360 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356A LEU 3.2 15.7 + - - +
357A ASP* 3.3 8.5 + - - +
359A TYR* 1.3 82.6 - - - +
361A GLU* 1.3 61.8 + - - +
363A LEU* 3.4 24.0 + - - +
364A ASP* 3.1 54.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 361 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357A ASP 3.0 12.7 + - - +
358A GLU* 3.5 22.1 - - - +
360A GLN* 1.3 74.1 - - - +
362A LEU* 1.3 63.9 + - - +
364A ASP* 3.5 9.0 + - - +
365A ILE* 3.3 34.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 362 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358A GLU 3.0 13.9 + - - +
359A TYR* 3.6 17.0 - - + +
361A GLU* 1.3 73.4 - - - +
363A LEU* 1.3 60.8 + - - +
365A ILE* 3.2 21.9 + - + +
366A LYS* 2.8 30.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 363 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359A TYR* 2.8 44.2 + - + +
360A GLN* 3.7 29.8 - - - +
362A LEU* 1.3 73.5 - - - +
364A ASP* 1.3 56.7 + - - +
366A LYS* 3.3 16.4 + - + +
367A LEU* 2.9 60.3 + - + +
----------------------------------------------------------
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Residues in contact with ASP 364 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360A GLN* 3.1 41.8 + - - +
361A GLU* 3.7 7.9 - - - +
362A LEU 3.2 0.2 - - - -
363A LEU* 1.3 73.3 - - - +
365A ILE* 1.3 67.9 + - + +
367A LEU* 3.4 13.4 + - - +
368A ALA* 3.2 22.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 365 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361A GLU* 3.3 28.4 + - + +
362A LEU* 3.2 22.1 + - + +
364A ASP* 1.3 78.1 - - + +
366A LYS* 1.3 63.0 + - - +
368A ALA* 3.2 8.2 + - - +
369A LEU* 3.1 39.7 + - + +
----------------------------------------------------------
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Residues in contact with LYS 366 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A LEU* 2.8 17.2 + - + +
363A LEU* 3.4 21.1 - - + +
364A ASP 3.3 0.2 - - - -
365A ILE* 1.3 78.3 - - - +
367A LEU* 1.3 69.1 + - + +
369A LEU* 3.3 13.6 + - + +
370A ASP* 2.6 51.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 367 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360A GLN* 6.0 0.2 - - - +
363A LEU* 2.9 47.4 + - + +
364A ASP* 4.0 12.3 - - - +
365A ILE 3.3 0.2 - - - -
366A LYS* 1.3 84.5 - - + +
368A ALA* 1.3 59.5 + - - +
370A ASP* 3.4 18.5 - - + +
371A MET* 3.2 25.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 368 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364A ASP 3.2 11.6 + - - +
365A ILE* 3.2 11.1 + - - +
367A LEU* 1.3 75.2 - - - +
369A LEU* 1.3 59.6 + - + +
371A MET* 3.2 11.5 + - - +
372A GLU* 3.0 34.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 369 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
365A ILE* 3.1 33.1 + - + +
366A LYS* 3.5 13.5 - - + +
368A ALA* 1.3 75.2 - - + +
370A ASP* 1.3 64.8 + - - +
372A GLU* 3.3 24.5 + - - +
373A ILE* 2.9 36.8 + - + +
----------------------------------------------------------
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Residues in contact with ASP 370 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366A LYS* 2.6 52.0 + - - +
367A LEU* 3.4 20.0 - - + +
368A ALA 3.3 0.2 - - - -
369A LEU* 1.3 74.3 - - - +
371A MET* 1.3 59.0 + - + +
373A ILE* 3.4 12.4 + - - +
374A HIS* 3.0 39.8 + - + +
377A ARG* 4.8 0.9 + - - -
----------------------------------------------------------
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Residues in contact with MET 371 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A LEU 3.2 12.5 + - - +
368A ALA* 3.2 12.5 + - - +
369A LEU 3.2 0.6 - - - -
370A ASP* 1.3 75.8 - - + +
372A GLU* 1.3 65.7 + - - +
374A HIS* 3.2 15.8 + - + +
375A ALA* 3.0 21.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 372 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
368A ALA* 3.0 20.1 + - - +
369A LEU* 3.4 31.6 - - - +
371A MET* 1.3 74.8 - - + +
373A ILE* 1.3 57.8 + - + +
375A ALA* 3.2 8.4 + - - +
376A TYR* 2.9 52.1 + - + -
----------------------------------------------------------
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Residues in contact with ILE 373 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A LEU* 2.9 28.8 + - + +
370A ASP* 3.7 10.5 - - - +
372A GLU* 1.3 73.9 - - + +
374A HIS* 1.3 60.0 + - - +
376A TYR* 3.3 12.2 + - + +
377A ARG* 2.9 64.3 + - + +
----------------------------------------------------------
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Residues in contact with HIS 374 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ASP* 3.0 33.1 + - + +
371A MET* 3.2 17.0 + - + +
373A ILE* 1.3 75.4 - - - +
375A ALA* 1.3 56.9 + - - +
377A ARG* 3.3 30.9 + - - +
378A LYS* 3.0 36.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 375 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371A MET 3.0 12.9 + - - +
372A GLU* 3.5 11.7 - - - +
373A ILE 3.2 0.2 - - - -
374A HIS* 1.3 74.3 - - - +
376A TYR* 1.3 61.7 + - + +
378A LYS* 3.3 8.3 + - - +
379A LEU* 3.0 31.6 + - + +
----------------------------------------------------------
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Residues in contact with TYR 376 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372A GLU* 2.9 47.0 + - + +
373A ILE* 3.3 12.8 + - + +
375A ALA* 1.3 73.2 - - + +
377A ARG* 1.3 61.1 + - - +
379A LEU* 3.3 20.3 + - + +
380A LEU* 2.9 32.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 377 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ASP 4.8 0.8 + - - -
373A ILE* 2.9 42.1 + - + +
374A HIS* 3.3 45.7 + - - +
376A TYR* 1.3 75.3 - - - +
378A LYS* 1.3 52.8 + - + +
380A LEU* 3.0 10.1 + - - +
381A GLU* 2.8 50.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 378 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374A HIS* 3.0 20.9 + - - +
375A ALA* 3.6 9.4 - - - +
377A ARG* 1.3 79.3 - - + +
379A LEU* 1.3 63.2 + - + +
381A GLU* 3.3 21.1 + - - +
382A GLY* 3.2 17.7 + - - -
----------------------------------------------------------
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Residues in contact with LEU 379 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375A ALA* 3.0 20.1 + - + +
376A TYR* 3.6 24.7 - - + +
378A LYS* 1.3 75.9 - - - +
380A LEU* 1.3 62.3 + - - +
382A GLY* 3.3 4.0 + - - -
383A GLU* 3.2 29.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 380 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376A TYR* 2.9 18.3 + - + +
377A ARG* 3.0 7.6 + - - +
379A LEU* 1.3 75.6 - - - +
381A GLU* 1.3 62.3 + - - +
383A GLU* 3.2 18.9 + - + +
384A GLU* 3.1 41.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 381 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A ARG* 2.8 36.0 + - - +
378A LYS* 3.5 22.3 + - - +
380A LEU* 1.3 73.8 - - - +
382A GLY* 1.3 56.2 + - - +
384A GLU* 4.7 2.5 - - - +
385A GLU* 3.0 34.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY 382 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378A LYS 3.2 9.9 + - - -
379A LEU 3.3 3.5 + - - -
381A GLU* 1.3 77.2 - - - +
383A GLU* 1.3 62.8 + - - +
385A GLU* 3.7 19.9 - - - +
----------------------------------------------------------
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Residues in contact with GLU 383 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379A LEU* 3.2 18.2 + - - +
380A LEU* 3.2 23.0 + - + +
382A GLY* 1.3 80.3 - - - +
384A GLU* 1.3 68.6 + - + +
385A GLU 4.6 2.6 - - - +
----------------------------------------------------------
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Residues in contact with GLU 384 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A LEU* 3.1 31.5 + - + +
381A GLU* 4.6 2.0 - - - +
383A GLU* 1.3 82.6 - - + +
385A GLU* 1.3 68.6 + - - +
386A ARG* 3.4 14.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 385 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381A GLU 3.0 17.5 + - - +
382A GLY* 3.7 20.3 - - - +
383A GLU 3.6 2.6 - - - +
384A GLU* 1.3 78.7 - - - +
386A ARG* 1.3 69.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il