Contacts of the helix formed by residues 794 - 823 (chain A) in PDB entry 2AA2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 794 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792A ASN 4.4 1.6 - - - +
793A LEU* 1.3 87.0 - - + +
795A LEU* 1.3 66.8 + - - +
796A GLU* 4.3 8.1 - - + +
797A ASP* 2.8 43.2 + - - +
798A GLN* 3.1 9.0 + - - +
887A LYS* 4.3 12.6 - - + -
888A SER* 3.7 23.1 - - - -
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Residues in contact with LEU 795 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
793A LEU 3.4 3.3 + - - -
794A PRO* 1.3 71.4 - - - +
796A GLU* 1.3 62.7 + - + +
798A GLN* 3.4 19.6 + - - +
799A ILE* 3.1 48.2 + - + +
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Residues in contact with GLU 796 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
794A PRO* 2.9 7.4 + - + +
795A LEU* 1.3 80.2 - - + +
797A ASP* 1.3 65.9 + - - +
799A ILE* 3.7 7.8 + - - +
800A THR* 3.0 28.7 + - - -
887A LYS* 4.1 16.8 - - - +
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Residues in contact with ASP 797 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
793A LEU* 4.4 11.4 - - + +
794A PRO* 2.8 33.4 + - + +
796A GLU* 1.3 72.2 - - - +
798A GLN* 1.3 58.2 + - - +
800A THR* 3.4 3.0 + - - -
801A LEU* 2.9 36.7 + - + +
886A LEU* 3.2 27.9 - - + +
887A LYS* 2.7 29.6 + - - +
888A SER* 2.9 27.0 + - - +
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Residues in contact with GLN 798 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
785A LYS* 5.5 7.7 - - - +
790A PHE* 3.1 58.4 - - + +
791A LYS* 3.3 12.8 - - - +
793A LEU* 2.7 27.2 - - + +
794A PRO 3.1 10.3 + - - +
795A LEU* 3.7 21.6 + - + +
796A GLU 3.4 0.2 - - - -
797A ASP* 1.3 72.7 - - - +
799A ILE* 1.3 67.4 + - + +
801A LEU 3.2 1.6 + - - -
802A ILE* 3.0 31.6 + - + +
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Residues in contact with ILE 799 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
795A LEU* 3.1 44.5 + - + +
796A GLU* 4.0 6.1 - - - +
798A GLN* 1.3 76.1 - - - +
800A THR* 1.3 63.3 + - - +
802A ILE* 3.4 9.4 + - + +
803A GLN* 3.0 50.9 + - + +
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Residues in contact with THR 800 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
796A GLU 3.0 16.7 + - - -
797A ASP* 3.6 7.4 + - - -
798A GLN 3.2 0.4 - - - -
799A ILE* 1.3 81.3 - - - +
801A LEU* 1.3 59.6 + - + +
803A GLN* 3.4 11.9 + - - +
804A TYR* 3.0 45.5 + - + -
882A PRO* 3.6 34.2 - - + +
886A LEU* 4.1 5.4 - - + -
970A LYS* 5.7 4.7 - - + -
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Residues in contact with LEU 801 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790A PHE* 3.8 24.5 - - + -
793A LEU* 3.9 20.2 - - + -
797A ASP* 2.9 21.2 + - + +
798A GLN 3.2 4.0 + - - +
800A THR* 1.3 75.3 - - + +
802A ILE* 1.3 56.7 + - - +
804A TYR* 3.4 3.6 + - - +
805A SER* 2.8 33.8 + - - -
877A LEU* 3.7 20.0 - - + +
878A LEU* 4.2 6.7 - - + -
880A THR 3.6 21.3 - - - +
881A ILE* 4.0 7.4 - - + -
886A LEU* 4.3 12.1 - - + -
892A PHE* 4.0 29.6 - - + -
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Residues in contact with ILE 802 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777A MET* 3.9 24.5 - - + -
780A VAL* 5.4 4.7 - - + -
781A VAL* 4.6 27.6 - - + +
784A ALA* 4.2 15.0 - - + -
790A PHE* 4.1 14.4 - - + -
798A GLN* 3.0 24.5 + - + +
799A ILE* 3.8 7.4 - - - +
801A LEU* 1.3 75.6 - - - +
803A GLN* 1.3 61.8 + - + +
805A SER* 3.8 4.7 + - - -
806A TRP* 3.0 30.7 + - - +
809A LEU* 5.4 1.7 - - + +
877A LEU* 4.1 15.3 - - + -
963A ILE* 5.6 4.7 - - + -
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Residues in contact with GLN 803 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799A ILE* 3.0 39.0 + - + +
800A THR* 3.7 11.0 + - - +
801A LEU 3.3 0.2 - - - -
802A ILE* 1.3 79.9 - - + +
804A TYR* 1.3 63.2 + - + +
806A TRP* 3.1 25.6 - - - -
962A GLU 5.1 2.9 - - - +
963A ILE* 4.2 27.3 - - + +
966A ASP* 2.6 38.6 + - - +
967A GLN* 3.5 17.6 - - + +
970A LYS* 3.9 11.3 - - - +
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Residues in contact with TYR 804 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
800A THR* 3.0 42.8 + - + +
801A LEU 3.9 2.2 - - - +
802A ILE 3.3 0.2 - - - -
803A GLN* 1.3 83.6 - - + +
805A SER* 1.3 57.9 + - - +
806A TRP* 3.7 0.7 - - - -
807A MET* 5.2 1.0 + - - +
808A SER* 5.6 0.5 - - - -
880A THR* 3.6 45.3 + - + +
881A ILE 4.0 4.7 - - - -
882A PRO* 3.9 19.9 - - + +
935A VAL* 5.7 3.3 - - - +
939A LEU* 5.4 4.7 - - - +
967A GLN* 4.2 14.7 - - + +
970A LYS* 3.3 42.9 - - + +
971A VAL* 4.3 10.8 - - + -
975A ASN* 3.3 17.5 + - - +
976A ALA* 3.6 27.1 - - + -
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Residues in contact with SER 805 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
801A LEU 2.8 20.8 + - - -
802A ILE 3.8 1.7 + - - -
804A TYR* 1.3 79.1 - - - +
806A TRP* 1.3 65.2 + - - +
807A MET 3.3 2.9 - - - -
808A SER* 3.0 10.4 + - - -
809A LEU* 2.9 26.7 + - - +
876A LEU 3.5 26.2 - - - -
877A LEU* 3.4 26.1 - - - +
879A SER 5.5 0.4 - - - -
880A THR* 5.4 4.7 - - - -
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Residues in contact with TRP 806 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A AS4 3.9 25.1 - - + -
773A ALA* 4.4 1.6 - - + -
777A MET* 3.6 37.0 - - + +
802A ILE 3.0 15.9 + - - +
803A GLN 3.1 24.0 - - - -
804A TYR 5.0 0.4 - - - -
805A SER* 1.3 75.8 - - - +
807A MET* 1.3 89.5 + - + +
809A LEU* 3.4 7.0 + - - +
810A SER* 2.7 43.1 + - - -
939A LEU* 4.3 2.7 - - + +
942A CYS* 3.9 21.1 - - - -
960A LEU* 4.2 30.1 - - + -
963A ILE* 3.6 20.2 - - + +
964A ILE* 4.2 10.8 - - + -
967A GLN* 2.8 27.7 + - - +
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Residues in contact with MET 807 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A AS4 3.8 46.0 - - + -
804A TYR 5.2 1.1 + - - +
805A SER 3.3 0.8 - - - -
806A TRP* 1.3 115.7 - - + +
808A SER* 1.3 58.9 + - - +
810A SER* 3.6 1.8 - - - -
811A SER* 2.9 31.1 + - - -
935A VAL* 3.9 13.7 - - + -
938A LEU* 3.8 35.9 - - + +
939A LEU* 3.8 22.9 - - + -
942A CYS* 3.9 16.2 - - + -
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Residues in contact with SER 808 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804A TYR 5.6 0.6 + - - -
805A SER* 3.0 16.5 + - - -
807A MET* 1.3 79.8 - - - +
809A LEU* 1.3 56.6 + - - +
811A SER* 3.3 1.4 + - - -
812A PHE* 3.0 32.4 + - - +
876A LEU* 3.5 35.5 + - - +
879A SER* 5.9 0.6 - - - -
931A MET* 3.8 5.9 - - - +
932A HIS* 6.2 1.1 - - - -
935A VAL* 3.6 28.1 - - - +
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Residues in contact with LEU 809 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A GOL 5.2 2.5 + - - +
777A MET* 5.3 2.0 - - + -
780A VAL* 3.8 35.7 - - + -
783A TRP* 4.5 7.0 - - + -
802A ILE* 5.4 2.5 - - - +
805A SER* 2.9 34.1 + - - +
806A TRP* 3.7 8.1 - - - +
808A SER* 1.3 75.3 - - - +
810A SER* 1.3 63.3 + - - +
812A PHE* 4.0 4.1 - - - +
813A ALA* 3.0 28.1 + - - +
873A LYS* 3.3 45.9 - - + +
876A LEU* 4.2 4.7 - - + -
877A LEU* 3.9 25.1 - - + +
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Residues in contact with SER 810 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A AS4 3.7 42.2 - - - +
204A GOL 5.1 3.9 + - - -
773A ALA* 5.6 0.7 - - - +
776A GLN* 4.5 9.9 + - - -
777A MET* 4.4 8.5 - - - +
806A TRP* 2.7 29.5 + - - -
807A MET* 3.6 6.1 - - - -
809A LEU* 1.3 79.2 - - - +
811A SER* 1.3 57.9 + - - +
813A ALA* 3.5 3.1 + - - +
814A LEU* 2.9 28.6 + - - +
817A ARG* 4.8 0.5 + - - -
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Residues in contact with SER 811 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A AS4 4.2 5.3 - - - +
807A MET 2.9 18.5 + - - -
808A SER* 3.3 1.6 + - - -
810A SER* 1.3 76.2 - - - +
812A PHE* 1.3 59.6 + - - +
814A LEU* 3.2 9.3 + - - +
815A SER* 3.0 31.1 + - - -
852A MET* 3.8 16.4 - - - +
931A MET* 3.2 21.9 - - - +
934A LEU* 4.7 2.6 - - - +
935A VAL* 4.1 1.6 - - - +
938A LEU* 3.7 26.1 - - - +
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Residues in contact with PHE 812 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808A SER 3.0 20.8 + - - +
809A LEU* 4.0 3.6 - - - +
811A SER* 1.3 78.4 + - - +
813A ALA* 1.3 57.0 + - - +
815A SER* 3.3 6.6 + - - -
816A TRP* 3.1 25.6 + - - +
855A ILE* 4.8 2.0 - - + -
859A PHE* 3.6 29.3 - + - -
864A LEU* 4.8 1.6 - - + -
869A TYR* 3.5 39.9 - + - -
872A MET* 3.6 43.5 - - + -
873A LYS* 3.9 11.0 - - + -
876A LEU* 3.3 23.6 - - + -
927A LEU* 4.0 16.2 - - + -
928A LEU* 4.7 1.8 - - + -
931A MET* 4.0 17.5 - - + -
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Residues in contact with ALA 813 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A GOL 4.1 21.3 - - - +
809A LEU 3.0 19.3 + - - +
810A SER 3.9 2.2 - - - +
812A PHE* 1.3 73.7 - - - +
814A LEU* 1.3 63.7 - - - +
816A TRP* 3.4 1.2 + - - +
817A ARG* 3.1 47.2 + - + +
869A TYR* 3.5 25.5 + - - +
873A LYS* 4.9 2.0 - - + +
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Residues in contact with LEU 814 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A AS4 4.2 4.9 - - + -
810A SER 2.9 15.0 + - - +
811A SER* 3.2 7.2 + - - +
813A ALA* 1.3 78.6 - - - +
815A SER* 1.3 60.6 + - - +
817A ARG* 3.4 12.9 + - - +
818A SER* 2.8 36.4 + - - +
827A LEU* 4.0 14.6 - - + -
828A TYR 3.4 33.9 - - - +
829A PHE* 3.5 43.3 - - + +
852A MET* 3.7 32.3 - - + -
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Residues in contact with SER 815 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811A SER* 3.0 14.9 + - - -
812A PHE* 3.3 8.7 + - - -
814A LEU* 1.3 77.6 - - - +
816A TRP* 1.3 57.5 + - - +
819A TYR* 3.0 28.9 + - - +
827A LEU* 5.7 0.2 - - - -
852A MET* 2.9 26.9 + - - +
855A ILE* 3.4 28.6 - - - +
856A SER* 3.1 20.5 + - - -
859A PHE* 3.6 7.7 - - - -
931A MET* 6.2 0.2 - - - +
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Residues in contact with TRP 816 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A SO4 2.7 31.1 + - - -
812A PHE 3.1 7.1 + - - +
813A ALA 3.7 5.6 - - - +
814A LEU 3.2 0.4 - - - -
815A SER* 1.3 77.9 - - - +
817A ARG* 1.3 60.9 + - + +
819A TYR* 3.2 33.5 + + - +
820A LYS* 2.8 47.2 + - + +
859A PHE* 3.4 9.3 - + + -
864A LEU* 4.0 16.6 - - + -
865A THR 3.7 6.5 - - - -
866A PHE* 3.5 45.1 - + + -
869A TYR* 3.4 66.9 - + + -
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Residues in contact with ARG 817 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A AS4 3.1 26.3 + - - -
202A SO4 4.1 17.7 - - - +
204A GOL 3.4 31.8 + - - -
749A ILE* 4.1 30.0 - - - +
776A GLN* 3.3 6.4 - - - +
810A SER 4.8 0.8 + - - -
813A ALA* 3.1 32.2 + - + +
814A LEU* 3.4 13.5 + - - +
816A TRP* 1.3 76.0 - - + +
818A SER* 1.3 61.1 - - - +
821A HIS* 2.8 44.7 + - + +
828A TYR* 3.1 31.4 + - + +
829A PHE* 3.1 18.8 + - - +
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Residues in contact with SER 818 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814A LEU* 2.8 22.1 + - - +
817A ARG* 1.3 75.4 - - - +
819A TYR* 1.3 60.1 + - - +
822A THR* 2.7 26.7 + - - -
824A SER* 2.8 9.9 + - - -
826A PHE 3.0 18.4 - - - -
827A LEU* 3.2 10.7 - - - +
828A TYR* 2.8 30.8 + - - +
856A SER* 3.6 19.3 - - - -
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Residues in contact with TYR 819 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
815A SER 3.0 19.3 + - - +
816A TRP* 3.4 30.7 - + - +
817A ARG 3.1 0.2 - - - -
818A SER* 1.3 77.4 - - - +
820A LYS* 1.3 61.2 + - - +
823A ASN* 3.1 30.4 + - - -
824A SER* 3.3 12.8 + - - +
856A SER 4.4 0.2 - - - +
859A PHE* 3.5 37.7 - - + -
860A VAL* 3.6 29.4 - - + -
863A GLN* 3.5 25.5 + - - -
864A LEU 3.2 26.5 + - - -
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Residues in contact with LYS 820 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A SO4 2.6 40.8 + - - +
816A TRP* 2.8 40.9 + - + +
817A ARG 4.0 1.3 - - - +
819A TYR* 1.3 82.4 - - + +
821A HIS* 1.3 79.1 + - + +
822A THR 3.8 0.2 + - - -
823A ASN* 4.3 6.2 + - - +
866A PHE* 4.8 11.7 - - - +
----------------------------------------------------------
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Residues in contact with HIS 821 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A SO4 3.5 22.5 + - - -
749A ILE* 3.4 22.8 - - + +
817A ARG* 2.8 40.8 + - + +
820A LYS* 1.3 89.8 - - + +
822A THR* 1.3 60.5 + - - +
823A ASN* 3.7 1.7 - - - +
828A TYR* 3.7 41.4 + + + -
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Residues in contact with THR 822 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
818A SER 2.7 17.3 + - - +
821A HIS* 1.3 82.3 - - - +
823A ASN* 1.3 74.3 + - - +
825A GLN* 3.0 35.0 + - - +
826A PHE* 3.1 37.1 + - + -
828A TYR* 3.6 33.0 - - + -
834A VAL* 4.7 2.2 - - + -
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Residues in contact with ASN 823 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
819A TYR* 3.1 22.4 + - - -
820A LYS 4.3 5.4 + - - +
821A HIS 3.7 1.6 - - - +
822A THR* 1.3 81.3 + - - +
824A SER* 1.3 68.5 + - - +
825A GLN* 3.2 2.8 + - + +
860A VAL* 4.1 10.2 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il