Contacts of the helix formed by residues 222 - 243 (chain C) in PDB entry 2AAZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 222 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69C LYS* 4.5 4.3 + - - +
219C ASP* 3.1 13.1 + - - +
221C GLY* 1.3 80.5 - - - +
223C GLY* 1.3 65.6 + - - +
225C PRO* 3.6 6.6 - - - +
226C PHE* 3.9 9.4 - - - -
262C HIS* 3.7 14.1 - - + -
313C MET* 3.7 21.3 - - + +
314C LYS 3.7 7.4 - - - +
315C MET* 3.5 45.5 - - + +
2451C CB3 3.4 70.9 - - + +
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Residues in contact with GLY 223 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219C ASP* 2.8 14.3 + - - +
222C LEU* 1.3 71.2 - - - +
224C VAL* 1.3 53.6 + - - -
226C PHE* 2.7 29.1 + - - +
227C ASN* 2.9 17.5 + - - +
450C UMP 3.5 5.4 - - - -
2451C CB3 3.1 36.5 + - - +
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Residues in contact with VAL 224 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C TYR* 3.9 15.0 - - + -
54C PHE* 4.6 0.2 - - + -
215C GLN* 4.4 6.3 - - - +
218C CYS* 3.8 26.5 - - + -
219C ASP 3.0 15.1 + - - +
220C LEU* 3.7 20.4 - - + +
223C GLY* 1.3 69.7 - - - -
225C PRO* 1.3 69.2 - - + +
227C ASN* 3.7 7.5 + - - -
228C ILE* 2.9 52.9 + - + +
251C LEU* 4.6 2.9 - - + -
253C MET* 4.2 18.6 - - + -
450C UMP 4.2 0.4 + - - -
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Residues in contact with PRO 225 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C TYR* 3.6 13.7 - - + +
64C PRO 5.4 0.7 - - - +
65C LEU* 5.4 0.5 - - - +
66C LEU* 3.7 32.9 + - + +
69C LYS* 4.1 17.5 - - - +
71C VAL* 4.5 13.4 - - + +
220C LEU 3.3 14.4 - - - +
221C GLY 3.6 15.9 - - - +
222C LEU 3.6 9.4 - - - +
223C GLY 3.3 4.5 - - - -
224C VAL* 1.3 92.1 - - + +
226C PHE* 1.3 64.1 + - + +
228C ILE* 4.1 2.5 - - + +
229C ALA* 3.5 20.4 + - - +
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Residues in contact with PHE 226 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69C LYS* 6.5 0.4 - - - -
71C VAL* 4.3 16.6 - - + -
72C PHE* 3.8 27.8 - + + -
75C GLY 3.9 4.9 - - - -
76C VAL* 3.5 41.1 - - + +
79C GLU* 4.2 13.7 - - - +
100C ILE* 4.1 22.0 - - + -
222C LEU 3.9 12.1 - - - -
223C GLY 2.7 15.0 + - - +
225C PRO* 1.3 76.7 - - + +
227C ASN* 1.3 55.2 + - - +
228C ILE 3.2 0.2 + - - -
229C ALA* 3.3 1.9 + - - +
230C SER* 2.8 38.8 + - - -
2451C CB3 3.6 55.6 - + + -
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Residues in contact with ASN 227 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C HIS* 3.4 22.6 + - - +
213C MET* 4.0 8.5 - - + +
215C GLN* 2.8 41.9 + - - +
223C GLY 2.9 16.6 + - - +
224C VAL* 3.7 8.0 + - - +
226C PHE* 1.3 77.0 - - - +
228C ILE* 1.3 61.0 + - - +
230C SER* 4.3 5.0 - - - -
231C TYR* 3.1 31.2 + - - +
249C PHE* 4.6 0.9 - - - -
251C LEU* 4.9 3.1 - - + -
450C UMP 2.9 31.0 + - - -
2451C CB3 3.8 4.2 - - - +
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Residues in contact with ILE 228 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C TYR* 4.7 7.9 - - + -
54C PHE* 4.2 8.5 - - + -
56C PHE* 3.7 45.5 - - + -
64C PRO* 3.6 24.2 - - + +
66C LEU* 4.7 11.7 - - + -
224C VAL* 2.9 36.8 + - + +
225C PRO* 4.1 4.5 - - + +
227C ASN* 1.3 76.4 - - - +
229C ALA* 1.3 62.2 + - - +
232C ALA* 3.1 22.2 + - - +
249C PHE* 3.9 11.7 - - + -
251C LEU* 3.7 19.1 - - + -
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Residues in contact with ALA 229 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63C LEU* 4.6 7.9 - - + -
64C PRO 4.3 11.0 - - - +
65C LEU* 3.8 27.1 - - + -
73C LEU* 5.8 0.2 - - + -
76C VAL* 4.0 14.8 - - + -
225C PRO 3.5 13.0 + - - +
226C PHE 3.3 3.4 + - - +
228C ILE* 1.3 80.1 - - - +
230C SER* 1.3 57.5 + - - +
232C ALA* 3.3 5.5 + - - +
233C LEU* 2.8 37.4 + - + +
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Residues in contact with SER 230 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76C VAL* 3.6 16.0 + - - +
79C GLU* 4.8 7.3 + - - -
80C LEU* 3.6 25.9 - - - +
83C PHE* 4.5 12.5 - - - -
131C TRP* 6.0 0.3 - - - -
188C HIS* 6.5 0.2 - - - -
226C PHE 2.8 23.4 + - - -
227C ASN* 3.7 7.4 - - - -
229C ALA* 1.3 72.7 - - - +
231C TYR* 1.3 67.0 + - - +
233C LEU* 3.2 5.7 + - - +
234C LEU* 2.8 27.3 + - - +
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Residues in contact with TYR 231 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83C PHE* 6.0 0.2 - + - -
131C TRP* 3.3 21.2 + + - -
171C LEU 5.7 0.5 + - - -
188C HIS* 2.6 53.5 + + + +
190C PHE* 5.3 2.6 + - - -
191C CYS* 3.8 28.6 - - + +
211C CYS* 4.2 6.1 - - - -
213C MET* 3.7 32.3 - - + +
227C ASN* 3.1 16.9 + - - +
230C SER* 1.3 84.4 - - - +
232C ALA* 1.3 64.4 + - - +
234C LEU* 3.7 23.5 - - + +
235C THR* 2.9 30.6 + - - -
249C PHE* 3.5 27.4 - - + -
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Residues in contact with ALA 232 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C LEU* 3.8 17.2 - - + +
63C LEU* 4.0 5.2 - - + -
64C PRO* 3.6 33.9 - - + -
228C ILE 3.1 19.5 + - - +
229C ALA 3.6 4.0 - - - +
231C TYR* 1.3 77.0 - - - +
233C LEU* 1.3 65.1 + - - +
235C THR* 3.3 4.4 + - - -
236C HIS* 3.0 29.4 + - + -
249C PHE* 4.7 5.5 - - + -
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Residues in contact with LEU 233 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63C LEU* 3.6 30.7 - - + -
73C LEU* 4.6 8.7 - - + -
76C VAL* 3.9 22.9 - - + -
77C ILE* 4.0 22.0 - - + +
80C LEU* 3.7 15.7 - - + -
229C ALA* 2.8 26.3 + - + +
230C SER* 3.5 4.7 - - - +
232C ALA* 1.3 74.3 - - - +
234C LEU* 1.3 65.0 + - - +
236C HIS* 3.1 6.0 + - - +
237C MET* 2.9 27.0 + - - +
280C LEU* 4.0 15.0 - - + -
300C PHE* 4.0 24.0 - - + -
302C VAL* 5.6 0.2 - - + -
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Residues in contact with LEU 234 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C LEU* 3.7 21.9 - - + +
84C VAL* 4.6 14.1 - - + -
131C TRP* 4.0 17.0 - - + -
153C LEU* 4.7 9.2 - - + -
171C LEU* 4.0 25.6 - - + -
193C PHE* 4.3 8.1 - - + -
211C CYS* 6.5 0.2 - - - -
230C SER 2.8 19.2 + - - +
231C TYR* 3.7 24.5 - - + +
232C ALA 3.3 0.2 - - - -
233C LEU* 1.3 72.2 - - - +
235C THR* 1.3 58.5 + - - +
237C MET* 3.2 9.9 + - - +
238C ILE* 2.9 54.0 + - + +
292C ILE* 4.9 3.6 - - + -
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Residues in contact with THR 235 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C LEU* 3.7 23.4 - - + +
193C PHE* 4.0 5.9 - - + -
209C LEU* 3.6 34.3 - - + +
210C SER 4.9 0.4 - - - -
211C CYS* 3.3 29.8 - - + +
231C TYR 2.9 18.3 + - - -
232C ALA 3.6 4.9 - - - -
234C LEU* 1.3 77.6 - - - +
236C HIS* 1.3 56.8 + - - +
238C ILE* 4.6 4.3 - - - -
239C ALA* 2.9 31.2 + - - +
246C PRO* 4.5 4.9 - - + -
249C PHE* 5.1 0.7 - - - -
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Residues in contact with HIS 236 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C LEU* 3.7 28.0 - - + +
61C ASN* 4.1 16.9 + - - -
62C THR 2.9 28.9 + - - -
63C LEU* 4.6 6.7 - - + -
232C ALA 3.0 32.1 + - - -
233C LEU* 3.1 7.8 + - - +
235C THR* 1.3 76.1 - - - +
237C MET* 1.3 62.7 + - - +
239C ALA* 3.3 7.1 + - - +
240C LEU* 3.1 18.4 + - - +
246C PRO* 3.5 20.5 - - + +
280C LEU* 3.5 33.8 + - + +
282C TRP* 3.7 13.0 + - + +
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Residues in contact with MET 237 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C LEU* 3.6 32.1 - - - -
81C LEU* 3.8 16.4 - - + -
84C VAL* 4.3 11.7 - - + -
233C LEU 2.9 13.6 + - - +
234C LEU* 3.4 11.2 - - + +
236C HIS* 1.3 76.5 - - - +
238C ILE* 1.3 62.0 + - - +
240C LEU* 3.1 12.3 + - - +
241C ILE* 3.2 18.0 + - - +
282C TRP* 3.8 19.7 - - + -
292C ILE* 4.1 21.8 - - + +
295C PHE* 3.6 41.7 - - + -
300C PHE* 3.8 13.7 - - + -
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Residues in contact with ILE 238 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153C LEU* 4.3 12.8 - - + -
156C VAL* 4.5 4.0 - - + -
157C ILE* 3.6 26.5 - - + -
160C ILE* 3.5 30.3 - - + -
193C PHE* 3.4 36.3 - - + -
209C LEU* 3.8 10.1 - - + -
234C LEU* 2.9 31.6 + - + +
235C THR 3.9 3.4 - - - +
237C MET* 1.3 77.0 - - - +
239C ALA* 1.3 59.4 + - - +
241C ILE* 3.3 2.6 + - - +
242C THR* 2.8 30.3 + - + +
292C ILE* 4.2 12.1 - - + -
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Residues in contact with ALA 239 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209C LEU* 3.8 4.7 - - + +
235C THR 2.9 18.8 + - - +
236C HIS 3.5 6.7 - - - +
237C MET 3.2 0.2 - - - -
238C ILE* 1.3 79.0 - - - +
240C LEU* 1.3 62.4 + - - +
243C ASP* 3.1 4.7 + - - -
244C THR* 2.9 55.5 + - - +
246C PRO* 3.6 24.7 - - + -
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Residues in contact with LEU 240 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236C HIS 3.1 11.7 + - - +
237C MET 3.1 9.4 + - - +
239C ALA* 1.3 79.2 - - - +
241C ILE* 1.3 64.4 + - + +
242C THR 3.5 0.2 + - - -
243C ASP* 3.6 6.1 + - - +
282C TRP* 3.7 38.6 - - + +
284C ARG 5.8 0.2 - - - +
285C SER* 5.0 0.7 - - - -
286C LYS* 3.6 46.7 - - + +
289C ILE* 3.6 32.1 - - + -
295C PHE* 3.9 9.0 - - + -
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Residues in contact with ILE 241 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157C ILE* 4.0 27.6 - - + -
161C LYS* 3.9 14.1 + - + +
237C MET 3.2 14.0 + - - +
238C ILE 3.3 4.5 + - - +
240C LEU* 1.3 81.4 - - + +
242C THR* 1.3 58.4 + - - +
243C ASP 3.5 0.2 - - - -
286C LYS* 3.7 24.0 + - + +
289C ILE* 4.3 6.1 - - + -
290C GLY 4.1 8.7 - - - +
291C ASP* 3.6 40.8 - - + +
292C ILE* 3.9 14.8 - - + +
295C PHE* 3.7 22.4 - - + -
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Residues in contact with THR 242 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157C ILE* 3.7 35.4 - - + +
160C ILE* 3.7 20.0 - - + +
161C LYS* 3.7 23.7 - - + +
238C ILE* 2.8 31.2 + - + +
239C ALA 3.5 0.2 + - - -
241C ILE* 1.3 79.7 - - - +
243C ASP* 1.3 70.4 + - - +
244C THR* 2.8 31.2 + - - +
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Residues in contact with ASP 243 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161C LYS* 6.1 0.5 - - - -
206C LYS* 3.9 30.5 + - + +
207C PRO* 3.9 6.4 - - - +
239C ALA 3.1 5.8 + - - -
240C LEU* 3.6 3.1 + - - +
241C ILE 3.5 1.0 - - - -
242C THR* 1.3 81.4 - - - +
244C THR* 1.3 61.8 + - - +
286C LYS* 2.7 42.9 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il