Contacts of the helix formed by residues 195 - 222 (chain A) in PDB entry 2AXT


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with HIS 195 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  ILE      2.6    19.5    +      -       -      +
    193A  LEU      3.3     1.4    -      -       -      -
    194A  MET*     1.3    72.9    -      -       -      +
    196A  PRO*     1.3    78.0    -      -       +      +
    197A  PHE*     3.1    52.7    +      +       +      +
    198A  HIS*     2.9    16.8    +      -       -      +
    199A  GLN*     3.3    11.7    +      -       -      +
    289A  GLY*     4.8     0.2    -      -       -      -
    292A  THR*     3.8    13.4    -      -       +      +
    293A  MET*     3.7    28.4    -      -       +      +
    297A  LEU*     3.8     9.7    +      -       -      +
    298A  ASN      3.4    30.2    +      -       -      -
    299A  GLY*     3.7     7.0    -      -       -      -
    404C  LEU*     4.6     5.1    -      -       +      +
    508C  DGD      4.3    14.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 196 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    194A  MET      4.0     0.9    -      -       -      +
    195A  HIS*     1.3    91.3    -      -       +      +
    197A  PHE*     1.3    64.2    +      -       +      +
    199A  GLN*     3.0    18.8    +      -       -      +
    200A  LEU*     2.9    32.6    +      -       -      +
    300A  PHE*     3.6    29.8    -      -       +      +
    404C  LEU*     3.6    25.1    -      -       +      -
    508C  DGD      6.1     0.7    -      -       +      -
    509C  DGD      4.0    39.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 197 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    195A  HIS*     3.0    22.5    +      +       +      +
    196A  PRO*     1.3    83.9    -      -       +      +
    198A  HIS*     1.3    57.3    +      -       -      +
    200A  LEU*     3.7     6.9    +      -       +      -
    201A  GLY      3.1    17.5    +      -       -      -
    285A  PHE*     3.6    40.5    -      +       -      +
    286A  THR*     3.5    16.5    +      -       -      -
    288A  LEU*     3.4    39.5    -      -       +      -
    289A  GLY*     3.7    14.1    -      -       -      -
    292A  THR*     4.0     4.0    -      -       -      -
    432C  VAL*     4.6     8.5    -      -       +      -
    508C  DGD      3.6    38.8    -      -       +      -
    509C  DGD      4.4    17.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 198 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    192A  ILE*     3.8    42.2    -      -       +      +
    193A  LEU*     4.5    15.8    +      -       +      +
    195A  HIS*     2.9    11.6    +      -       +      +
    197A  PHE*     1.3    73.6    -      -       -      +
    199A  GLN*     1.3    56.4    +      -       +      +
    200A  LEU      3.1     1.6    -      -       -      -
    201A  GLY*     2.7    18.9    +      -       -      -
    202A  VAL*     2.7    40.4    +      -       +      +
    286A  THR*     3.7    12.5    -      -       +      +
    289A  GLY*     5.5     0.2    -      -       -      -
    293A  MET*     5.2     1.5    -      -       +      +
    558A  CLA      2.3    77.5    +      +       +      -
    560A  CLA      4.6     2.9    +      -       +      -
    179D  PHE*     6.1     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 199 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    193A  LEU      4.0    14.2    +      -       -      +
    194A  MET*     5.0     2.2    -      -       -      +
    195A  HIS      3.7    10.3    -      -       -      +
    196A  PRO*     3.0    28.2    +      -       -      +
    198A  HIS*     1.3    77.1    -      -       -      +
    200A  LEU*     1.3    58.3    +      -       -      +
    202A  VAL*     3.4     2.4    +      -       -      +
    203A  ALA*     2.9    27.9    +      -       -      +
    560A  CLA      3.3    51.5    +      -       -      +
    509C  DGD      3.5    23.0    -      -       +      +
     74D  LEU*     3.3    33.7    -      -       -      +
    179D  PHE*     4.0     9.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 200 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    196A  PRO      2.9    18.9    +      -       -      +
    197A  PHE*     3.8    10.1    -      -       +      +
    199A  GLN*     1.3    75.7    -      -       -      +
    201A  GLY*     1.3    65.3    +      -       -      +
    203A  ALA*     3.8     5.7    -      -       +      +
    204A  GLY*     2.9    19.9    +      -       -      -
    282A  GLY*     3.7    10.1    -      -       -      +
    285A  PHE*     3.6    41.7    -      -       +      -
    509C  DGD      3.5    62.6    -      -       +      -
    358D  MGE      6.6     0.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 201 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    197A  PHE      3.1     6.9    +      -       -      -
    198A  HIS      2.7    10.2    +      -       -      -
    200A  LEU*     1.3    78.4    -      -       -      +
    202A  VAL*     1.3    54.9    +      -       -      -
    204A  GLY*     3.1     1.9    +      -       -      -
    205A  VAL*     2.9    26.7    +      -       -      +
    282A  GLY      3.6    13.8    -      -       -      +
    283A  VAL*     5.0     0.4    -      -       -      +
    286A  THR*     3.3    25.1    -      -       -      -
    558A  CLA      3.4    13.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 202 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    198A  HIS*     2.7    43.9    +      -       +      +
    199A  GLN      3.7     1.3    -      -       -      +
    201A  GLY*     1.3    68.3    -      -       -      +
    203A  ALA*     1.3    58.7    +      -       -      +
    204A  GLY      3.0     1.6    -      -       -      -
    205A  VAL*     4.4     1.8    -      -       -      +
    206A  PHE*     2.6    65.8    +      -       +      +
    558A  CLA      3.9    24.5    -      -       +      -
    560A  CLA      3.2    44.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 203 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    199A  GLN      2.9    16.7    +      -       -      +
    200A  LEU*     3.8    10.3    -      -       +      +
    202A  VAL*     1.3    75.8    -      -       -      +
    204A  GLY*     1.3    55.5    +      -       -      +
    207A  GLY*     2.6    31.7    +      -       -      -
    278A  TRP*     3.0    13.5    +      -       +      -
    560A  CLA      3.0    31.9    -      -       +      +
    509C  DGD      3.9    22.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 204 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    200A  LEU      2.9    14.2    +      -       -      -
    201A  GLY      3.5     4.0    -      -       -      -
    202A  VAL      3.0     0.2    -      -       -      -
    203A  ALA*     1.3    77.9    -      -       -      +
    205A  VAL*     1.3    54.0    +      -       -      +
    208A  GLY*     2.6    34.3    +      -       -      -
    278A  TRP*     3.6    17.0    +      -       -      -
    279A  PRO*     4.1     9.5    -      -       -      +
    282A  GLY*     4.3    15.9    -      -       -      -
    283A  VAL*     5.2     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 205 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201A  GLY      2.9    14.3    +      -       -      +
    202A  VAL*     4.2     2.0    -      -       -      +
    204A  GLY*     1.3    69.6    -      -       -      -
    206A  PHE*     1.3    65.2    +      -       -      +
    209A  ALA*     3.4    14.9    +      -       -      +
    283A  VAL*     3.8    22.2    -      -       +      -
    558A  CLA      3.5    34.1    -      -       +      -
    561A  PHO      4.0     6.1    -      -       +      -
    204D  VAL*     3.6    28.4    -      -       +      +
    205D  LEU*     3.5    32.3    -      -       +      -
    208D  ALA*     3.8     8.2    -      -       +      +
    354D  CLA      4.4     7.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 206 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    202A  VAL*     2.6    45.7    +      -       +      +
    205A  VAL*     1.3    71.4    -      -       -      +
    207A  GLY*     1.3    64.1    +      -       -      +
    209A  ALA*     3.4     5.4    +      -       -      +
    210A  LEU*     3.1    20.3    +      -       -      +
    558A  CLA      4.2    16.2    -      -       +      -
    560A  CLA      4.0    35.4    -      +       +      +
    562A  PHO      3.2    42.4    -      -       +      +
    204D  VAL*     3.9    17.0    -      -       +      -
    354D  CLA      3.4    56.5    -      +       +      -
----------------------------------------------------------
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Residues in contact with GLY 207 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203A  ALA      2.6    26.1    +      -       -      -
    206A  PHE*     1.3    71.6    -      -       -      +
    208A  GLY*     1.3    65.9    +      -       -      -
    210A  LEU*     2.8    17.0    +      -       -      +
    211A  PHE*     2.9    18.3    +      -       -      -
    278A  TRP*     3.6    11.9    -      -       -      -
    560A  CLA      3.6    19.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 208 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    204A  GLY      2.6    21.5    +      -       -      -
    205A  VAL      4.2     0.4    -      -       -      -
    207A  GLY*     1.3    71.1    -      -       -      +
    209A  ALA*     1.3    61.6    +      -       -      +
    211A  PHE*     3.1     0.6    +      -       -      -
    212A  CYS      2.8    18.9    +      -       -      -
    278A  TRP*     3.7     6.8    -      -       -      -
    279A  PRO*     4.2    13.9    -      -       -      -
    208D  ALA*     4.1     5.4    -      -       -      -
    211D  CYS*     3.0    27.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 209 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    205A  VAL      3.4     9.1    +      -       -      +
    206A  PHE      3.6     8.1    -      -       -      +
    207A  GLY      3.2     0.6    -      -       -      -
    208A  GLY*     1.3    74.0    -      -       -      +
    210A  LEU*     1.3    65.4    +      -       -      +
    212A  CYS*     2.9    12.9    +      -       -      +
    213A  ALA      3.0     6.2    +      -       -      -
    562A  PHO      3.0    27.1    -      -       +      +
    204D  VAL*     3.7    34.3    -      -       +      +
    207D  GLY      4.0    12.3    -      -       -      -
    208D  ALA*     3.9     3.2    -      -       -      +
    275D  PRO*     4.0     6.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 210 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    206A  PHE      3.1     9.8    +      -       -      +
    207A  GLY      2.8    14.1    +      -       -      +
    209A  ALA*     1.3    75.0    -      -       -      +
    211A  PHE*     1.3    71.4    +      -       +      +
    213A  ALA*     3.5     5.2    +      -       -      +
    214A  MET*     3.1    27.8    +      -       +      +
    560A  CLA      3.6    42.0    -      -       +      -
    562A  PHO      3.0    81.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 211 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    207A  GLY      2.9    17.7    +      -       -      -
    208A  GLY*     3.7     1.3    -      -       -      +
    210A  LEU*     1.3    94.5    -      -       +      +
    212A  CYS*     1.3    58.7    +      -       -      +
    213A  ALA      3.1     1.8    -      -       -      -
    214A  MET*     3.4     6.4    -      -       +      +
    215A  HIS*     2.7    36.4    +      -       -      +
    274A  PHE*     3.5    35.9    -      +       -      -
    275A  LEU*     4.1    10.6    -      -       +      +
    278A  TRP*     3.9    31.6    -      +       +      -
    560A  CLA      4.6    17.7    -      -       +      -
    562A  PHO      5.5     1.1    -      -       -      -
    564A  PQ9      4.0    41.9    -      -       +      +
    211D  CYS*     3.6    17.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with CYS 212 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    208A  GLY      2.8     6.0    +      -       -      +
    209A  ALA*     2.9     9.2    +      -       -      +
    211A  PHE*     1.3    75.8    -      -       -      +
    213A  ALA*     1.3    54.4    +      -       -      +
    216A  GLY      3.1    19.9    +      -       -      -
    207D  GLY      3.0    31.6    -      -       -      +
    210D  LEU*     3.8    14.6    -      -       -      -
    211D  CYS*     3.3    13.2    -      -       +      -
    271D  MET*     2.7    56.6    -      -       -      +
    275D  PRO*     4.1     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 213 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209A  ALA      3.0     4.4    +      -       -      -
    210A  LEU      3.5     4.5    -      -       -      +
    212A  CYS*     1.3    76.0    -      -       -      +
    214A  MET*     1.3    52.6    +      -       -      +
    217A  SER*     2.6    42.4    +      -       -      -
    562A  PHO      3.4    46.4    -      -       +      -
    145D  ALA*     5.0     0.9    -      -       +      -
    271D  MET      3.6     8.5    -      -       -      -
    272D  LEU*     4.6     4.4    -      -       -      +
    275D  PRO*     4.1     6.0    -      -       +      +
    276D  VAL*     4.6    11.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 214 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    210A  LEU*     3.1    22.1    +      -       +      +
    211A  PHE*     3.1    14.2    +      -       +      +
    213A  ALA*     1.3    75.9    -      -       -      +
    215A  HIS*     1.3    70.9    +      -       -      +
    217A  SER*     2.8    12.3    +      -       -      -
    218A  LEU*     2.8    21.8    +      -       +      +
    255A  PHE*     3.1    40.4    -      -       +      -
    258A  LEU*     4.9     0.7    -      -       +      -
    562A  PHO      3.0    56.5    -      -       +      +
    564A  PQ9      3.9    20.4    -      -       +      -
    142D  ASN*     3.5    14.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 215 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    211A  PHE      2.7    18.7    +      -       -      +
    214A  MET*     1.3    74.9    -      -       -      +
    216A  GLY*     1.3    64.9    +      -       -      +
    218A  LEU*     4.0     0.3    -      -       -      +
    219A  VAL*     3.2    37.2    +      -       +      +
    246A  TYR*     4.6     0.4    -      -       -      -
    271A  LEU*     3.7    10.3    -      -       +      +
    272A  HIS*     3.1    23.2    +      +       -      -
    275A  LEU*     3.8    20.6    -      -       +      +
    557A  FE2      1.9    32.3    -      -       -      -
    564A  PQ9      2.7    31.5    +      -       +      +
    214D  HIS*     3.6    16.4    -      +       -      -
    268D  HIS*     2.9    18.8    +      +       -      -
    271D  MET*     4.1     8.7    -      -       +      -
    353D  BCT      3.4     4.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 216 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    212A  CYS      3.1    18.0    +      -       -      -
    213A  ALA      4.0     0.2    -      -       -      -
    215A  HIS*     1.3    79.5    -      -       -      +
    217A  SER*     1.3    63.7    +      -       -      +
    220A  THR*     3.0    25.1    +      -       -      -
    268D  HIS*     3.0    28.8    -      -       -      +
    271D  MET*     3.8    10.0    -      -       -      +
    272D  LEU*     4.3     4.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 217 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    213A  ALA      2.6    26.5    +      -       -      -
    214A  MET      2.8     7.5    +      -       -      -
    216A  GLY*     1.3    69.8    -      -       -      +
    218A  LEU*     1.3    65.1    +      -       -      -
    220A  THR*     2.9    17.3    +      -       -      -
    221A  SER*     2.9    13.7    +      -       -      -
    562A  PHO      5.3     0.2    -      -       -      -
    141D  TYR*     2.3    31.4    +      -       -      +
    142D  ASN*     2.9    29.9    +      -       -      +
    145D  ALA*     4.3     4.5    -      -       -      -
    272D  LEU*     3.7    10.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 218 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    214A  MET*     2.8    22.2    +      -       +      +
    215A  HIS      4.1     1.6    -      -       -      +
    217A  SER*     1.3    73.1    +      -       -      +
    219A  VAL*     1.3    63.9    +      -       -      +
    221A  SER*     2.8    23.4    +      -       -      +
    222A  SER*     3.2    10.6    +      -       -      -
    251A  ALA*     4.8    13.4    -      -       +      +
    254A  TYR*     3.8    36.6    -      -       +      -
    255A  PHE*     3.9    19.7    -      -       +      -
    564A  PQ9      3.5    57.2    -      -       +      +
    142D  ASN*     4.0    15.3    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 219 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    215A  HIS*     3.2    29.3    +      -       +      +
    218A  LEU*     1.3    76.0    -      -       -      +
    220A  THR*     1.3    65.2    +      -       -      +
    222A  SER*     2.8    23.3    +      -       -      -
    223A  LEU*     3.5    17.9    -      -       +      +
    245A  THR*     5.9     1.3    -      -       +      -
    246A  TYR*     3.7    41.0    -      -       +      +
    564A  PQ9      4.1     5.1    -      -       +      +
    264D  LYS      5.3     1.6    -      -       -      +
    268D  HIS*     3.3    46.9    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 220 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    216A  GLY      3.0    18.2    +      -       -      -
    217A  SER      2.9     5.8    +      -       -      -
    219A  VAL*     1.3    78.8    -      -       -      +
    221A  SER*     1.3    59.4    +      -       -      +
    222A  SER      3.2     1.3    +      -       -      -
    223A  LEU*     3.3    19.1    -      -       +      +
    139D  ARG*     3.0    40.4    +      -       -      +
    141D  TYR*     3.7    32.1    -      -       +      -
    265D  ARG      4.6     2.8    +      -       -      +
    268D  HIS*     3.5    19.8    +      -       -      +
    269D  PHE*     3.8    14.1    +      -       +      +
    272D  LEU*     5.0     1.7    -      -       -      +
    359D  MGE      4.5     3.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 221 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    217A  SER*     2.9    13.8    +      -       -      -
    218A  LEU*     2.8    17.9    +      -       -      -
    220A  THR*     1.3    77.3    -      -       -      +
    222A  SER*     1.3    55.7    +      -       -      +
    223A  LEU      3.7     0.7    -      -       -      -
    254A  TYR*     6.3     1.8    -      -       -      -
    482B  ILE*     5.1     0.7    -      -       -      +
    138D  VAL*     3.3    13.5    -      -       -      +
    139D  ARG*     2.9    51.6    +      -       -      +
    141D  TYR*     3.3    26.5    +      -       -      +
    142D  ASN*     4.1     3.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 222 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    218A  LEU      3.2     7.8    +      -       -      -
    219A  VAL      2.8     7.8    +      -       -      -
    221A  SER*     1.3    81.0    -      -       -      +
    223A  LEU*     1.3    62.0    +      -       -      +
    224A  ILE*     4.5     0.3    -      -       -      +
    246A  TYR*     2.9    26.0    -      -       -      +
    247A  ASN*     2.9    39.0    +      -       -      +
    250A  ALA*     4.4     9.2    -      -       -      -
    251A  ALA*     3.8    15.4    -      -       -      +
    482B  ILE*     4.7     9.8    -      -       -      +
    138D  VAL*     4.7     3.6    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il