Contacts of the helix formed by residues 263 - 290 (chain D) in PDB entry 2AXT


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASN 263 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    234A  ASN*     3.2    30.8    +      -       -      +
    237A  TYR*     3.7    21.5    +      -       -      +
    246D  MET*     3.2     4.0    -      -       -      +
    262D  SER*     1.3    79.4    +      -       -      +
    264D  LYS*     1.3    55.2    +      -       -      +
    265D  ARG*     2.6    15.2    +      -       -      +
    266D  TRP*     2.5    39.6    +      -       +      -
    267D  LEU*     3.1     8.5    +      -       -      -
    360D  MGE      2.8    27.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 264 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    219A  VAL*     5.3     0.8    -      -       -      +
    237A  TYR*     3.4    31.9    -      -       +      -
    243A  GLU      4.5     1.0    +      -       -      -
    244A  GLU*     3.2    37.0    +      -       -      +
    245A  THR*     4.1    12.6    -      -       +      -
    246A  TYR*     5.6     0.4    -      -       +      -
    242D  GLU*     3.6    27.8    -      -       -      +
    244D  TYR*     2.9    31.5    +      -       +      +
    246D  MET*     2.9    33.3    -      -       +      +
    263D  ASN*     1.3    68.9    -      -       -      +
    265D  ARG*     1.3    62.2    +      -       -      +
    267D  LEU*     4.2     7.9    -      -       +      -
    268D  HIS*     2.8    37.9    +      -       +      +
    353D  BCT      3.7    10.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 265 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    219A  VAL*     6.1     0.4    -      -       -      -
    220A  THR*     4.6     3.6    +      -       -      +
    223A  LEU*     3.6    42.5    -      -       +      +
    224A  ILE      3.0    32.9    +      -       -      +
    226A  GLU*     3.9    17.0    +      -       -      +
    227A  THR*     4.9     2.6    +      -       -      +
    233A  ALA*     3.2    27.6    +      -       -      +
    234A  ASN*     3.9    16.0    -      -       -      +
    236A  GLY*     3.4    17.9    -      -       -      -
    237A  TYR*     3.9    13.6    -      -       +      +
    245A  THR*     2.9    47.6    +      -       +      +
    480B  SER      5.2     3.2    +      -       -      -
    263D  ASN*     2.6    17.2    +      -       -      +
    264D  LYS*     1.3    73.9    -      -       -      +
    266D  TRP*     1.3    55.8    +      -       -      -
    268D  HIS*     3.9     2.8    +      -       -      +
    269D  PHE*     3.4    20.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 266 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    234A  ASN*     3.2    20.3    +      -       -      +
    261D  PHE*     3.7    11.3    -      +       -      -
    263D  ASN*     2.5    25.5    +      -       +      +
    265D  ARG*     1.3    69.9    -      -       -      +
    267D  LEU*     1.3    64.6    +      -       -      +
    269D  PHE*     3.0    34.4    +      +       -      -
    270D  PHE*     2.9    45.3    +      +       -      +
    273D  PHE*     6.2     0.4    -      +       +      -
    359D  MGE      4.2     0.7    -      -       -      -
    360D  MGE      3.2    53.8    +      -       -      +
     19L  LEU*     3.6    28.8    -      -       +      +
    210L  MGE      3.4    57.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 267 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    214D  HIS*     3.8    16.8    -      -       +      +
    246D  MET*     5.3     1.1    -      -       +      -
    261D  PHE*     3.2    54.9    -      -       +      -
    263D  ASN      3.1     7.1    +      -       -      +
    264D  LYS*     3.7    14.1    -      -       +      +
    266D  TRP*     1.3    81.3    -      -       -      +
    268D  HIS*     1.3    81.5    +      -       +      +
    270D  PHE*     3.3     4.0    +      -       -      +
    271D  MET*     3.1    43.8    +      -       +      +
    356D  PQ9      3.7    28.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 268 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    215A  HIS*     2.9    25.0    +      +       -      -
    216A  GLY*     3.0    30.3    -      -       -      +
    219A  VAL*     3.3    38.3    -      -       +      +
    220A  THR*     3.7     8.7    -      -       -      +
    246A  TYR*     5.7     0.4    -      +       -      -
    557A  FE2      2.3    23.1    -      -       -      -
    214D  HIS*     3.4     2.2    +      +       -      -
    264D  LYS*     2.8    35.6    +      -       +      +
    265D  ARG*     4.4     2.2    -      -       -      +
    267D  LEU*     1.3    89.2    -      -       +      +
    269D  PHE*     1.3    63.5    +      -       -      +
    271D  MET*     3.9     4.5    -      -       -      -
    272D  LEU*     3.6     2.9    +      -       -      +
    353D  BCT      2.9    27.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 269 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    220A  THR*     3.8    12.5    +      -       +      +
    234A  ASN*     5.3     0.7    -      -       -      +
    141D  TYR*     4.7    11.2    -      +       -      -
    265D  ARG      3.4    13.0    +      -       -      +
    266D  TRP*     3.0    40.0    +      +       +      +
    268D  HIS*     1.3    75.4    -      -       -      +
    270D  PHE*     1.3    58.1    +      -       -      +
    271D  MET      3.2     0.2    -      -       -      -
    272D  LEU*     2.8    34.9    +      -       +      +
    273D  PHE*     2.9    18.0    +      -       +      +
    359D  MGE      3.0    88.4    -      -       +      +
    210L  MGE      4.1    18.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 270 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    210D  LEU*     3.5    33.4    -      -       +      -
    261D  PHE*     3.9    18.8    -      +       +      -
    266D  TRP*     2.9    37.8    +      +       +      +
    267D  LEU      3.4    10.3    -      -       -      +
    269D  PHE*     1.3    78.9    -      -       -      +
    271D  MET*     1.3    56.9    +      -       -      +
    272D  LEU      2.9     6.2    +      -       -      -
    273D  PHE*     2.9    12.0    +      +       -      -
    274D  VAL*     2.9    39.9    +      -       +      +
    356D  PQ9      3.5    30.3    -      -       +      -
    360D  MGE      3.6    31.6    -      -       +      -
     19L  LEU*     5.3     0.2    -      -       +      -
    210L  MGE      3.7    26.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 271 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    212A  CYS*     2.7    73.6    -      -       -      +
    215A  HIS*     4.1    21.5    -      -       +      -
    216A  GLY*     3.8     2.5    -      -       -      -
    275A  LEU*     5.3     2.0    -      -       +      -
    210D  LEU*     4.3    16.6    -      -       +      +
    211D  CYS*     4.2    15.7    -      -       -      +
    214D  HIS*     3.7    22.2    -      -       +      -
    261D  PHE*     6.1     0.7    -      -       +      -
    267D  LEU*     3.1    34.9    +      -       +      +
    268D  HIS*     3.7    12.8    -      -       -      +
    269D  PHE      3.2     0.2    -      -       -      -
    270D  PHE*     1.3    78.1    -      -       +      +
    272D  LEU*     1.3    56.9    +      -       -      +
    275D  PRO*     3.3     9.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 272 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    212A  CYS      4.7     0.2    -      -       -      -
    213A  ALA*     4.6     6.7    -      -       -      +
    216A  GLY      4.3     5.6    -      -       -      +
    217A  SER*     3.7    14.8    -      -       -      -
    220A  THR*     5.0     1.3    -      -       -      -
    141D  TYR*     3.4    47.6    -      -       +      +
    144D  ILE*     5.4     3.1    -      -       +      -
    145D  ALA*     4.2    16.2    -      -       +      +
    268D  HIS      3.6     8.2    +      -       -      +
    269D  PHE*     2.8    19.0    +      -       +      +
    271D  MET*     1.3    77.2    -      -       -      +
    273D  PHE*     1.3    64.8    +      -       -      +
    274D  VAL      3.5     0.4    -      -       -      -
    275D  PRO*     4.0     0.7    -      -       -      +
    276D  VAL*     2.9    45.1    +      -       +      +
    359D  MGE      4.2    24.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 273 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    517B  CLA      6.1     4.5    -      -       +      -
    266D  TRP*     6.2     0.2    -      -       +      -
    269D  PHE*     2.9    20.9    +      +       +      +
    270D  PHE*     2.9    13.4    +      +       -      +
    272D  LEU*     1.3    81.9    -      -       -      +
    274D  VAL*     1.3    67.0    +      -       +      +
    276D  VAL*     4.6     1.3    -      -       -      -
    277D  THR*     2.6    65.5    +      -       +      -
    356D  PQ9      3.8    17.7    -      -       +      -
    359D  MGE      3.7    43.3    -      -       +      -
     23L  LEU*     5.8     3.8    -      -       +      -
    210L  MGE      3.4    61.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 274 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203D  GLY*     3.8    15.3    -      -       -      +
    206D  GLY      4.1     3.4    -      -       -      +
    207D  GLY*     3.9    12.3    -      -       -      +
    210D  LEU*     3.8    18.6    -      -       +      -
    270D  PHE*     2.9    42.4    +      -       +      +
    273D  PHE*     1.3    80.7    -      -       +      +
    275D  PRO*     1.3    73.2    -      -       +      +
    278D  GLY*     3.2    16.5    +      -       -      -
    356D  PQ9      3.7    45.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 275 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    209A  ALA*     4.0    15.3    -      -       +      +
    212A  CYS*     4.1     8.3    -      -       -      -
    213A  ALA*     4.1    10.3    -      -       +      +
    562A  PHO      3.5    27.7    -      -       +      +
    203D  GLY      3.9    12.9    -      -       -      +
    204D  VAL*     5.0     1.5    +      -       +      +
    207D  GLY*     4.2     6.5    -      -       -      -
    271D  MET      3.3    25.6    -      -       -      +
    272D  LEU      4.0     3.6    -      -       -      +
    273D  PHE      4.0     0.2    -      -       -      -
    274D  VAL*     1.3    98.2    -      -       +      +
    276D  VAL*     1.3    65.5    +      -       -      +
    278D  GLY*     3.8     0.5    +      -       -      -
    279D  LEU*     3.4    25.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 276 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    213A  ALA*     4.6    10.8    -      -       +      -
    562A  PHO      5.1     1.8    -      -       +      -
    464B  PHE*     5.3     0.9    -      -       +      -
    144D  ILE*     5.1     1.3    -      -       +      +
    145D  ALA*     3.6    35.9    -      -       +      +
    147D  SER*     4.9     2.7    -      -       -      +
    148D  ALA*     3.8    16.3    -      -       +      +
    272D  LEU*     2.9    30.5    +      -       +      +
    273D  PHE*     4.0     1.1    -      -       -      +
    274D  VAL      3.3     0.6    -      -       -      -
    275D  PRO*     1.3    76.1    -      -       -      +
    277D  THR*     1.3    68.2    +      -       -      +
    279D  LEU      3.2    10.2    +      -       -      -
    280D  TRP*     3.2    26.3    +      -       +      +
    359D  MGE      3.8    25.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 277 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    517B  CLA      4.4    24.7    -      -       +      -
    273D  PHE*     2.6    58.2    +      -       +      -
    276D  VAL*     1.3    74.3    -      -       -      +
    278D  GLY*     1.3    57.2    +      -       -      +
    280D  TRP*     2.8    25.3    +      -       -      +
    281D  MET*     3.0    17.4    +      -       +      +
    356D  PQ9      3.7    25.6    -      -       +      -
    359D  MGE      3.9    13.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 278 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    199D  MET      4.1    17.0    -      -       -      -
    200D  GLY*     2.9    31.2    +      -       -      -
    203D  GLY*     4.3     6.1    -      -       -      -
    204D  VAL      5.6     0.2    -      -       -      -
    274D  VAL      3.2    12.7    +      -       -      -
    275D  PRO      4.2     1.6    -      -       -      -
    277D  THR*     1.3    80.1    -      -       -      +
    279D  LEU*     1.3    58.1    +      -       -      +
    281D  MET*     3.5     2.8    +      -       -      -
    282D  SER      3.0    12.5    +      -       -      -
    356D  PQ9      4.4     7.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 279 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    562A  PHO      3.3    33.9    -      -       +      -
    148D  ALA*     4.3    17.2    -      -       +      +
    149D  PRO*     4.5     2.2    -      -       +      -
    152D  VAL*     3.8    18.8    -      -       +      +
    204D  VAL*     3.3    32.1    -      -       +      -
    275D  PRO      3.4    12.2    +      -       -      +
    276D  VAL      3.2     8.7    +      -       -      +
    278D  GLY*     1.3    75.0    -      -       -      +
    280D  TRP*     1.3    65.1    +      -       -      +
    282D  SER*     3.3     5.4    -      -       -      -
    283D  ALA*     3.2    19.2    +      -       -      +
    354D  CLA      3.1    44.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 280 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    460B  LEU*     3.1    42.4    -      -       +      -
    461B  LEU*     4.4    17.7    -      -       +      -
    463B  PHE*     4.2    13.0    -      +       -      -
    464B  PHE*     3.9    25.5    -      +       +      -
    147D  SER*     3.1    40.0    +      -       -      -
    148D  ALA*     3.3    15.2    -      -       -      +
    151D  ALA*     4.0    20.9    -      -       +      -
    276D  VAL*     3.2    31.9    +      -       +      +
    277D  THR*     2.8    11.1    +      -       -      +
    279D  LEU*     1.3    77.7    -      -       -      +
    281D  MET*     1.3    76.6    +      -       +      +
    283D  ALA*     2.9    14.5    +      -       -      +
    284D  ILE*     3.0    20.1    +      -       +      +
    359D  MGE      4.0    15.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 281 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    461B  LEU*     5.2     0.2    -      -       +      -
    517B  CLA      3.4    44.9    -      -       +      -
    196D  PHE*     3.3    17.9    -      -       +      +
    199D  MET*     3.8    46.0    -      -       +      -
    277D  THR*     3.0    20.3    +      -       +      +
    278D  GLY*     4.0     4.3    -      -       -      +
    280D  TRP*     1.3    84.2    -      -       +      +
    282D  SER*     1.3    66.4    -      -       -      +
    284D  ILE*     3.4    29.3    +      -       +      +
    285D  GLY      3.1    18.9    +      -       -      -
    356D  PQ9      5.4     1.1    -      -       +      -
    359D  MGE      4.3    13.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 282 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    191D  TRP*     3.9     3.3    -      -       -      -
    196D  PHE      3.9    10.9    +      -       -      -
    197D  HIS*     4.9     4.3    -      -       -      +
    200D  GLY*     4.0     9.6    -      -       -      -
    278D  GLY      3.0    18.5    +      -       -      -
    279D  LEU*     3.3    13.7    -      -       -      -
    281D  MET*     1.3    80.7    -      -       -      +
    283D  ALA*     1.3    62.3    +      -       -      +
    285D  GLY*     3.5     2.1    +      -       -      -
    286D  VAL*     3.4    13.0    +      -       -      +
    354D  CLA      2.8    52.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 283 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    460B  LEU*     4.2     9.0    -      -       +      -
    151D  ALA*     4.0    23.8    -      -       +      +
    155D  SER*     3.7    16.0    +      -       -      +
    279D  LEU      3.2    10.0    +      -       -      +
    280D  TRP*     2.9    12.3    +      -       +      +
    282D  SER*     1.3    76.1    -      -       -      +
    284D  ILE*     1.3    67.7    +      -       -      +
    285D  GLY      3.0     1.3    -      -       -      -
    286D  VAL*     2.8    15.1    +      -       -      +
    287D  VAL*     3.0    14.6    +      -       -      +
    354D  CLA      3.6    11.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 284 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    453B  PHE*     4.7     5.6    -      -       +      -
    457B  VAL*     3.7    30.4    -      -       +      +
    460B  LEU*     5.0     5.3    -      -       +      +
    461B  LEU*     3.9    28.3    -      -       +      -
    530B  MGE      4.8     9.2    -      -       +      -
    196D  PHE*     4.2    25.1    -      -       +      -
    280D  TRP*     3.0    12.3    +      -       +      +
    281D  MET*     3.6    36.1    -      -       +      +
    283D  ALA*     1.3    78.0    -      -       +      +
    285D  GLY*     1.3    65.1    +      -       -      +
    287D  VAL*     3.1    20.3    +      -       -      +
    288D  GLY*     3.2     7.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 285 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    191D  TRP*     3.6    17.3    -      -       -      -
    194D  ASN*     4.5     3.8    +      -       -      -
    196D  PHE*     3.6    28.7    -      -       -      +
    281D  MET      3.1     9.5    +      -       -      -
    282D  SER      3.8     0.7    -      -       -      -
    283D  ALA      2.9     2.4    +      -       -      -
    284D  ILE*     1.3    78.1    -      -       -      +
    286D  VAL*     1.3    54.8    +      -       -      +
    288D  GLY*     2.8    18.2    +      -       -      -
    289D  LEU*     3.2    12.5    +      -       -      +
    293D  LEU      5.5     0.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 286 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    155D  SER*     3.9    22.9    -      -       -      +
    156D  VAL*     4.3    11.2    -      -       +      -
    160D  TYR*     4.2    20.0    -      -       +      -
    185D  PHE*     4.7    12.1    -      -       +      -
    191D  TRP*     3.6    14.6    -      -       +      -
    282D  SER      3.4     4.2    +      -       -      +
    283D  ALA      2.8     9.7    +      -       -      +
    285D  GLY*     1.3    67.6    -      -       -      -
    287D  VAL*     1.3    65.2    +      -       -      +
    288D  GLY      2.8     6.4    +      -       -      -
    289D  LEU*     2.8    17.5    +      -       -      +
    290D  ALA*     3.1    10.4    +      -       -      +
    354D  CLA      3.4    39.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 287 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    453B  PHE*     4.5     2.4    -      -       +      +
    456B  ALA*     3.7    29.8    -      -       +      +
    457B  VAL*     3.6    25.4    -      -       +      -
    460B  LEU*     4.1    20.9    -      -       +      -
    155D  SER*     4.1    10.3    -      -       -      -
    159D  ILE*     4.3    21.3    -      -       +      -
    160D  TYR      5.9     0.2    -      -       -      +
    283D  ALA      3.0    16.7    +      -       -      +
    284D  ILE*     3.3    13.2    -      -       -      +
    286D  VAL*     1.3    76.8    -      -       -      +
    288D  GLY*     1.3    60.5    +      -       -      +
    290D  ALA*     3.5    13.7    -      -       -      +
    291D  LEU*     4.2     9.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 288 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    324B  LEU*     6.5     0.7    -      -       -      -
    453B  PHE*     3.7    26.6    -      -       -      -
    284D  ILE      3.2     5.0    +      -       -      -
    285D  GLY*     2.8    10.2    +      -       -      -
    286D  VAL      2.8     2.6    -      -       -      -
    287D  VAL*     1.3    75.7    -      -       -      +
    289D  LEU*     1.3    55.6    +      -       -      -
    290D  ALA      3.0     8.9    +      -       -      -
    291D  LEU*     3.1     6.6    +      -       -      +
    293D  LEU*     3.0    35.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 289 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    160D  TYR*     3.2    20.3    -      -       +      -
    164D  GLN*     3.8     1.0    +      -       -      -
    185D  PHE*     3.2    31.9    -      -       +      -
    189D  HIS*     3.7    29.0    -      -       +      +
    191D  TRP*     3.5    32.5    -      -       +      -
    194D  ASN*     4.4     9.4    -      -       -      +
    285D  GLY      3.2     8.7    +      -       -      +
    286D  VAL*     2.8    13.9    +      -       -      +
    288D  GLY*     1.3    67.8    -      -       -      +
    290D  ALA*     1.3    63.9    +      -       -      +
    291D  LEU      3.1     1.8    -      -       -      -
    292D  ASN*     3.2    11.5    +      -       -      +
    293D  LEU      4.3     0.7    -      -       -      +
    294D  ARG*     3.3    37.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 290 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    257B  TRP*     4.6     0.3    -      -       -      -
    272B  ARG*     4.7     0.9    +      -       -      -
    159D  ILE*     4.2     7.4    -      -       +      +
    160D  TYR*     3.6    39.9    -      -       -      +
    163D  GLY*     3.4    31.4    -      -       -      +
    164D  GLN*     3.6     8.9    +      -       -      -
    286D  VAL      3.1     5.2    +      -       -      +
    287D  VAL*     3.5    15.9    -      -       -      +
    288D  GLY      3.0     0.4    -      -       -      -
    289D  LEU*     1.3    80.8    -      -       -      +
    291D  LEU*     1.3    63.4    +      -       +      +
    292D  ASN      3.2     1.9    +      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il