Contacts of the helix formed by residues 267 - 293 (chain A) in PDB entry 2AXT


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASN 267 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    265A  PHE*     4.6     1.5    -      -       +      +
    266A  ASN*     1.3    89.0    +      -       -      +
    268A  SER*     1.3    64.2    +      -       -      +
    269A  ARG*     3.0    15.1    +      -       -      +
    270A  SER*     2.8    30.1    +      -       -      -
    271A  LEU*     2.7    25.0    +      -       -      +
    568A  SQD      2.6    33.1    +      -       -      +
    232D  PHE      3.0    22.0    +      -       -      +
    233D  ARG*     4.9     0.6    -      -       -      +
    235D  PHE*     3.7    20.7    +      -       -      +
    237D  PRO*     6.1     0.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 268 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    244A  GLU*     5.3     0.7    +      -       -      -
    246A  TYR*     4.0     8.5    +      -       -      -
    248A  ILE*     3.6    31.3    -      -       -      +
    266A  ASN      3.9     1.6    -      -       -      -
    267A  ASN*     1.3    70.2    +      -       -      +
    269A  ARG*     1.3    57.4    +      -       -      +
    271A  LEU*     4.3     8.1    -      -       -      +
    272A  HIS*     2.8    48.7    +      -       -      +
    218D  VAL*     5.6     1.3    -      -       -      -
    235D  PHE*     3.6    27.3    -      -       -      -
    243D  THR*     4.1    13.3    -      -       -      +
    353D  BCT      5.0     1.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 269 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    267A  ASN*     2.9     8.1    +      -       -      +
    268A  SER*     1.3    77.1    -      -       -      +
    270A  SER*     1.3    62.7    +      -       -      +
    273A  PHE*     3.1    13.3    +      -       -      +
    457C  LYS      5.1     0.2    +      -       -      -
    218D  VAL*     5.5     0.7    -      -       +      -
    219D  GLU*     2.7    32.1    -      -       -      +
    222D  LEU*     3.4    25.7    -      -       +      +
    223D  PHE      3.1    25.4    +      -       -      -
    225D  ASP*     3.3    18.6    +      -       -      +
    231D  THR*     2.9    41.3    +      -       -      -
    232D  PHE*     3.7    11.6    -      -       +      -
    234D  ALA*     3.2    21.6    +      -       -      +
    235D  PHE*     3.7    17.2    -      -       +      +
    243D  THR*     2.7    37.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 270 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    265A  PHE*     3.5    15.4    -      -       -      -
    267A  ASN*     2.8    23.7    +      -       -      -
    269A  ARG*     1.3    73.7    -      -       -      +
    271A  LEU*     1.3    60.4    +      -       -      +
    273A  PHE*     4.0     1.6    -      -       -      +
    274A  PHE*     3.5    15.8    +      -       -      +
    568A  SQD      2.7    53.1    +      -       -      +
    232D  PHE*     3.2    21.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 271 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    215A  HIS*     3.7    14.4    -      -       +      +
    246A  TYR*     5.6     0.4    -      -       -      +
    248A  ILE*     5.8     1.6    -      -       +      -
    265A  PHE*     3.7    30.7    -      -       +      -
    267A  ASN      2.7    19.5    +      -       -      +
    268A  SER*     3.7     8.5    -      -       -      +
    270A  SER*     1.3    72.0    -      -       -      +
    272A  HIS*     1.3    76.4    +      -       +      +
    274A  PHE*     3.2     5.7    +      -       -      +
    275A  LEU*     3.2    28.7    +      -       +      +
    564A  PQ9      3.4    69.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS 272 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    215A  HIS*     3.1    16.5    +      +       -      -
    246A  TYR*     4.8     0.4    -      -       -      -
    268A  SER*     2.8    39.9    +      -       -      +
    269A  ARG      4.2     2.2    -      -       -      +
    271A  LEU*     1.3    78.9    -      -       +      +
    273A  PHE*     1.3    63.1    +      -       -      +
    275A  LEU*     3.3    18.7    +      -       +      +
    276A  ALA      3.3     8.7    +      -       -      -
    557A  FE2      2.4    24.5    -      -       -      -
    214D  HIS*     3.3    14.5    +      +       -      -
    215D  GLY*     3.3    13.2    -      -       -      +
    218D  VAL*     3.1    48.6    -      -       +      +
    219D  GLU*     4.2     0.9    -      -       -      +
    244D  TYR*     5.6     0.7    -      +       -      -
    353D  BCT      3.0    25.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 273 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    269A  ARG      3.1    17.9    +      -       -      +
    270A  SER      4.1     0.9    -      -       -      +
    272A  HIS*     1.3    73.1    -      -       -      +
    274A  PHE*     1.3    60.7    +      -       -      +
    275A  LEU      2.9     4.9    -      -       -      -
    276A  ALA*     2.9     3.9    +      -       -      +
    277A  ALA*     2.8    44.5    +      -       +      +
    567A  LHG      3.1    92.0    -      -       +      -
    568A  SQD      3.7    37.5    -      -       +      -
    219D  GLU*     3.6    15.0    -      -       -      +
    232D  PHE*     3.8    20.0    -      +       +      -
----------------------------------------------------------
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Residues in contact with PHE 274 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    211A  PHE*     3.5    39.2    -      +       -      -
    265A  PHE*     3.8    17.9    -      +       +      -
    270A  SER      3.5    11.9    +      -       -      +
    271A  LEU      3.2     9.7    +      -       -      +
    273A  PHE*     1.3    84.3    -      -       -      +
    275A  LEU*     1.3    62.6    +      -       +      +
    277A  ALA*     3.9     4.9    -      -       +      +
    278A  TRP*     3.4    46.2    +      +       +      +
    564A  PQ9      3.6    42.2    -      -       +      -
    568A  SQD      3.6    44.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 275 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    211A  PHE*     4.1    20.2    -      -       +      +
    215A  HIS*     3.8    38.8    -      -       +      +
    271A  LEU*     3.3    24.2    -      -       +      +
    272A  HIS*     3.3    23.6    -      -       +      +
    273A  PHE      2.9     0.6    -      -       -      -
    274A  PHE*     1.3    82.8    -      -       +      +
    276A  ALA*     1.3    56.5    +      -       -      +
    278A  TRP*     5.3     0.2    -      -       -      -
    279A  PRO*     2.9    20.3    -      -       -      +
    564A  PQ9      4.4     8.7    -      -       +      -
    211D  CYS*     2.6    45.6    -      -       -      +
    214D  HIS*     4.6     6.5    -      -       +      -
    215D  GLY*     4.1     4.9    -      -       -      +
    271D  MET*     5.3     2.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 276 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    272A  HIS      3.3     1.7    +      -       -      +
    273A  PHE*     2.9     7.3    +      -       -      +
    275A  LEU*     1.3    78.1    -      -       -      +
    277A  ALA*     1.3    58.1    +      -       -      +
    279A  PRO*     4.4     1.3    -      -       -      -
    280A  VAL*     3.0    31.1    -      -       +      +
    567A  LHG      3.7    25.5    -      -       +      +
    212D  ALA*     3.7    14.4    -      -       -      +
    215D  GLY      3.4     5.8    -      -       -      +
    216D  ALA*     3.3    31.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 277 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    273A  PHE*     2.8    41.1    +      -       +      +
    274A  PHE*     4.6     4.5    -      -       +      +
    276A  ALA*     1.3    80.0    -      -       -      +
    278A  TRP*     1.3    60.7    +      -       -      +
    279A  PRO      3.6     0.2    -      -       -      -
    281A  VAL*     2.8    38.8    +      -       +      +
    567A  LHG      4.0    20.4    -      -       +      -
    568A  SQD      5.9     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 278 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    203A  ALA*     3.0    35.0    +      -       +      -
    204A  GLY*     3.6     6.3    -      -       -      -
    207A  GLY*     3.6     4.9    -      -       -      -
    208A  GLY      3.7    17.0    -      -       -      -
    211A  PHE*     3.9    21.1    -      +       +      -
    274A  PHE*     3.4    40.8    +      +       +      +
    277A  ALA*     1.3    77.6    -      -       -      +
    279A  PRO*     1.3    74.0    -      -       +      +
    281A  VAL*     4.2     2.2    -      -       -      +
    282A  GLY*     3.1    19.8    +      -       -      -
    560A  CLA      3.3    31.6    -      -       +      -
    568A  SQD      4.4    26.2    -      -       +      -
    509C  DGD      4.4    12.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with PRO 279 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    204A  GLY*     4.1    17.9    -      -       -      +
    208A  GLY*     4.2    11.2    -      -       -      -
    275A  LEU      2.9    29.4    -      -       -      +
    276A  ALA      4.5     0.7    -      -       -      -
    277A  ALA      4.0     0.2    -      -       -      -
    278A  TRP*     1.3    94.8    -      -       +      +
    280A  VAL*     1.3    60.2    +      -       -      +
    283A  VAL*     2.7    36.2    +      -       -      +
    561A  PHO      3.4    22.9    -      -       +      -
    208D  ALA      4.3     0.7    -      -       -      +
    211D  CYS*     3.9     7.6    -      -       -      +
    212D  ALA*     3.3    21.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 280 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    145A  VAL      4.3     6.7    -      -       -      +
    146A  ALA*     3.7    35.7    -      -       +      +
    149A  ALA*     4.1     9.2    -      -       +      +
    276A  ALA      3.0    26.0    -      -       -      +
    277A  ALA*     3.5     2.2    +      -       -      +
    278A  TRP      3.4     0.6    -      -       -      -
    279A  PRO*     1.3    77.7    -      -       -      +
    281A  VAL*     1.3    64.7    +      -       -      +
    283A  VAL*     3.8     0.5    -      -       -      +
    284A  TRP*     2.9    62.1    +      -       +      +
    561A  PHO      5.2     2.5    -      -       +      -
    567A  LHG      4.5     5.4    -      -       +      -
    212D  ALA*     4.4    12.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 281 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    277A  ALA*     2.8    29.0    +      -       +      +
    278A  TRP*     4.2     2.5    -      -       -      +
    280A  VAL*     1.3    73.0    -      -       -      +
    282A  GLY*     1.3    63.4    +      -       -      +
    284A  TRP*     3.5    20.6    -      -       +      +
    285A  PHE*     3.3    39.6    +      -       +      -
    567A  LHG      3.9    44.4    -      -       +      -
    436C  PHE*     5.9     1.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 282 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    200A  LEU*     3.7    19.0    -      -       -      +
    201A  GLY*     3.6    10.1    -      -       -      -
    204A  GLY*     4.3     6.3    -      -       -      -
    278A  TRP      3.1    13.9    +      -       -      -
    279A  PRO      3.7     1.8    -      -       -      -
    281A  VAL*     1.3    78.6    -      -       -      +
    283A  VAL*     1.3    63.5    +      -       -      +
    285A  PHE*     3.2    24.9    +      -       -      +
    286A  THR      3.5     4.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 283 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    149A  ALA*     3.6    25.4    -      -       +      -
    150A  PRO      4.4     0.2    -      -       -      -
    153A  SER*     3.8    16.1    +      -       -      +
    201A  GLY*     5.0     0.7    -      -       -      -
    204A  GLY*     4.9     0.4    -      -       -      -
    205A  VAL*     3.8    22.0    -      -       +      +
    279A  PRO      2.7    22.6    +      -       -      +
    282A  GLY*     1.3    69.5    -      -       -      -
    284A  TRP*     1.3    68.1    +      -       -      +
    286A  THR*     2.9    19.2    +      -       -      +
    287A  ALA*     3.3     7.1    +      -       -      +
    558A  CLA      3.8    15.5    -      -       +      +
    561A  PHO      3.7    33.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 284 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    145A  VAL*     3.5    22.2    -      -       +      -
    148A  SER*     2.8    33.3    +      -       -      -
    149A  ALA*     3.6    17.2    -      -       -      +
    152A  ALA*     4.5     0.9    -      -       +      -
    280A  VAL*     2.9    30.8    +      -       +      +
    281A  VAL*     3.5    35.9    -      -       +      +
    283A  VAL*     1.3    75.3    -      -       -      +
    285A  PHE*     1.3    55.1    +      -       -      +
    287A  ALA*     2.7    32.0    +      -       -      +
    288A  LEU*     2.9    13.4    +      -       +      +
    567A  LHG      4.4    25.4    -      -       +      -
    435C  PHE*     3.7    26.5    -      +       +      -
    436C  PHE*     4.2    25.4    -      +       +      -
    439C  VAL*     3.6    31.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 285 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    197A  PHE*     3.6    47.2    -      +       +      +
    200A  LEU*     3.6    27.4    -      -       +      -
    281A  VAL*     3.3    37.6    +      -       +      -
    282A  GLY*     3.2     9.8    +      -       -      +
    284A  TRP*     1.3    79.1    -      -       +      +
    286A  THR*     1.3    50.2    +      -       -      +
    288A  LEU*     2.6    25.8    +      -       +      +
    289A  GLY*     2.6    33.1    +      -       -      -
    567A  LHG      4.5    17.5    -      -       +      -
    432C  VAL*     6.1     0.4    -      -       +      -
    436C  PHE*     4.5     8.3    -      +       -      -
    509C  DGD      3.8    25.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 286 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    153A  SER*     4.8     1.0    +      -       -      -
    197A  PHE      3.5    11.6    +      -       -      +
    198A  HIS*     3.7    18.8    -      -       +      +
    201A  GLY*     3.3    28.4    -      -       -      -
    282A  GLY      3.5     2.0    +      -       -      -
    283A  VAL*     2.9    26.7    +      -       -      +
    285A  PHE*     1.3    74.9    -      -       -      +
    287A  ALA*     1.3    57.3    +      -       -      +
    289A  GLY*     2.8    16.7    +      -       -      +
    290A  ILE*     2.9    18.0    +      -       -      +
    558A  CLA      3.0    42.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 287 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    152A  ALA*     3.5    37.9    -      -       +      +
    153A  SER*     3.6    19.6    +      -       -      +
    156A  ALA*     3.8     7.7    -      -       -      +
    283A  VAL      3.3     4.2    +      -       -      +
    284A  TRP*     2.7    17.5    +      -       -      +
    286A  THR*     1.3    75.0    -      -       -      +
    288A  LEU*     1.3    54.7    +      -       +      +
    290A  ILE      3.6     0.2    +      -       -      -
    291A  SER*     2.7    37.4    +      -       -      -
    558A  CLA      4.7     2.2    -      -       -      -
    435C  PHE*     5.8     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 288 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    197A  PHE*     3.4    14.4    -      -       +      -
    284A  TRP      2.9    11.0    +      -       -      +
    285A  PHE*     2.6    31.0    +      -       +      +
    287A  ALA*     1.3    73.2    -      -       +      +
    289A  GLY*     1.3    58.3    +      -       -      +
    291A  SER*     4.1     2.4    -      -       -      -
    292A  THR*     2.8    33.2    +      -       -      -
    431C  PHE*     4.5    11.2    -      -       +      -
    432C  VAL*     3.9    31.9    -      -       +      -
    435C  PHE*     3.8    30.1    -      -       +      -
    436C  PHE*     3.5    39.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 289 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    195A  HIS*     4.8     0.7    -      -       -      -
    197A  PHE*     3.7    21.8    -      -       -      -
    198A  HIS*     6.3     0.2    -      -       -      -
    285A  PHE      2.6    10.6    +      -       -      -
    286A  THR*     2.8     6.4    +      -       -      -
    288A  LEU*     1.3    78.7    -      -       -      +
    290A  ILE*     1.3    53.7    +      -       -      -
    292A  THR*     3.0     2.4    +      -       -      -
    293A  MET*     2.6    53.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 290 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    156A  ALA*     3.7    34.1    -      -       +      +
    157A  VAL*     4.1     9.4    -      -       +      +
    161A  TYR*     4.0    15.0    -      -       +      -
    182A  PHE*     5.0     0.4    -      -       +      -
    186A  PHE*     3.4    29.4    -      -       +      -
    192A  ILE*     3.9    14.4    -      -       +      -
    286A  THR      2.9    12.8    +      -       -      +
    289A  GLY*     1.3    74.4    -      -       -      +
    291A  SER*     1.3    62.7    +      -       -      +
    293A  MET      3.8     1.0    -      -       -      -
    294A  ALA*     3.1    23.0    +      -       -      +
    558A  CLA      3.0    51.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 291 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    152A  ALA      4.9     1.0    +      -       -      -
    156A  ALA*     3.4    14.7    -      -       -      +
    160A  ILE*     3.8    15.7    -      -       -      +
    287A  ALA*     2.7    23.5    +      -       -      +
    288A  LEU*     4.1     5.4    -      -       -      -
    290A  ILE*     1.3    78.7    -      -       -      +
    292A  THR*     1.3    56.5    +      -       -      +
    294A  ALA*     3.2    14.1    -      -       -      +
    295A  PHE*     3.4    17.5    -      -       -      -
    431C  PHE*     3.3    41.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 292 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    195A  HIS*     3.8    19.3    -      -       +      +
    197A  PHE*     4.0     9.6    -      -       -      -
    288A  LEU      2.8    21.5    +      -       -      -
    289A  GLY*     3.0     3.7    +      -       -      +
    291A  SER*     1.3    75.7    -      -       -      +
    293A  MET*     1.3    58.7    +      -       -      +
    294A  ALA      2.8     9.7    +      -       -      -
    295A  PHE*     3.0    14.2    +      -       -      +
    296A  ASN      3.8     2.1    +      -       -      -
    297A  LEU*     3.6    29.5    +      -       +      +
    428C  THR*     3.5    30.2    +      -       -      +
    431C  PHE*     6.0     1.0    -      -       -      +
    432C  VAL*     4.1    13.9    -      -       -      +
    508C  DGD      4.2     6.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET 293 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    161A  TYR*     3.8     2.0    -      -       -      -
    186A  PHE*     3.7    24.5    -      -       +      -
    190A  HIS*     2.8    53.7    +      -       -      +
    192A  ILE*     3.3    40.8    -      -       +      -
    195A  HIS*     3.7    30.7    -      -       +      +
    198A  HIS*     5.2     2.2    -      -       +      -
    289A  GLY*     2.6    37.3    +      -       -      +
    290A  ILE      3.8     1.1    -      -       -      -
    292A  THR*     1.3    71.7    -      -       -      +
    294A  ALA*     1.3    59.0    +      -       -      +
    295A  PHE      3.1     0.7    -      -       -      -
    296A  ASN      3.5     3.5    +      -       -      -
    297A  LEU      3.3    23.3    -      -       -      +
    298A  ASN*     3.9     6.1    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il