Contacts of the helix formed by residues 5045 - 5073 (chain c) in PDB entry 2AXT


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU5045 (chain c).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5027c  ASP*     4.4     5.2    -      -       -      +
   5041c  ARG      3.4    23.8    -      -       -      +
   5042c  LEU*     3.4    13.8    +      -       +      +
   5043c  ILE      3.8     0.4    -      -       -      -
   5044c  ASN*     1.3    90.3    -      -       -      +
   5046c  SER*     1.3    68.6    +      -       -      +
   5047c  GLY      3.1     2.7    -      -       -      -
   5048c  LYS*     2.8    22.5    +      -       +      -
   5049c  LEU*     2.9    10.4    +      -       -      -
   5138c  GLU*     3.2    44.9    -      -       -      +
   5139c  THR*     4.6     6.3    -      -       -      +
   5501c  CLA      3.5    24.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with SER5046 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5045c  LEU*     1.3    74.3    -      -       -      +
   5047c  GLY*     1.3    55.0    +      -       -      +
   5049c  LEU*     3.2    12.9    -      -       -      +
   5050c  LEU*     2.6    37.6    +      -       -      +
   5139c  THR*     4.0     2.5    +      -       -      +
   5140c  LEU*     3.1    30.7    +      -       -      +
   5141c  GLU      4.7     0.5    +      -       -      -
   5148c  GLY*     4.9     1.9    -      -       -      -
   5149c  TYR*     3.4    45.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY5047 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5045c  LEU      2.8     6.1    +      -       -      -
   5046c  SER*     1.3    81.4    +      -       -      +
   5048c  LYS*     1.3    58.2    +      -       -      -
   5050c  LEU*     3.3    13.7    -      -       -      +
   5051c  GLY      3.4     1.2    +      -       -      -
   5132c  HIS*     2.9    20.6    +      -       -      +
   5137c  PRO      3.4    19.7    -      -       -      -
   5139c  THR      3.6    10.0    -      -       -      +
   5140c  LEU*     3.8    18.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with LYS5048 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5042c  LEU*     3.5    25.6    -      -       +      -
   5045c  LEU*     2.8    14.8    +      -       +      +
   5047c  GLY*     1.3    68.0    -      -       -      -
   5049c  LEU*     1.3    51.5    +      -       -      +
   5050c  LEU      2.7     6.5    +      -       -      -
   5051c  GLY*     2.7    23.4    +      -       -      -
   5052c  ALA      2.8    14.2    +      -       -      -
   5132c  HIS      2.9    26.4    +      -       -      -
   5133c  ALA*     2.8    13.8    -      -       -      +
   5134c  ILE*     2.8    43.9    +      -       -      +
   5136c  GLY      3.3    10.3    +      -       -      -
   5137c  PRO      4.0     1.1    -      -       -      -
   5138c  GLU*     3.3    39.6    -      -       +      +
   5501c  CLA      3.5    18.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU5049 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5042c  LEU*     3.7    25.9    -      -       +      +
   5043c  ILE      4.2     4.9    -      -       -      +
   5045c  LEU      2.9     6.0    +      -       -      +
   5046c  SER*     3.0    18.6    +      -       -      +
   5048c  LYS*     1.3    75.5    -      -       -      +
   5050c  LEU*     1.3    56.7    +      -       -      +
   5052c  ALA*     4.0     9.2    -      -       +      -
   5053c  HIS*     2.8    53.4    +      -       +      +
   5149c  TYR*     3.1    23.3    -      -       +      +
   5151c  TRP*     3.8    21.3    -      -       +      -
   5499c  CLA      3.7    35.2    -      -       +      -
   5501c  CLA      4.8     1.3    -      -       -      -
   5502c  CLA      5.0     1.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU5050 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5046c  SER      2.6    13.9    +      -       -      +
   5047c  GLY*     3.3    11.2    -      -       -      +
   5048c  LYS      2.8     0.2    -      -       -      -
   5049c  LEU*     1.3    75.0    -      -       -      +
   5051c  GLY*     1.3    54.0    +      -       -      +
   5053c  HIS*     3.1     4.8    +      -       -      +
   5054c  VAL*     2.7    48.0    +      -       +      +
   5132c  HIS*     3.5    37.7    -      -       +      +
   5140c  LEU*     4.7     6.5    -      -       +      -
   5149c  TYR*     6.3     0.9    -      -       +      -
   5502c  CLA      4.0    42.6    -      -       +      -
   5503c  CLA      3.6    39.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY5051 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5047c  GLY      3.4     4.2    +      -       -      -
   5048c  LYS      2.7    12.1    +      -       -      -
   5050c  LEU*     1.3    72.6    -      -       -      +
   5052c  ALA*     1.3    55.3    +      -       -      -
   5054c  VAL*     4.2     1.3    -      -       -      -
   5055c  ALA*     2.7    37.7    +      -       -      +
   5129c  GLY*     3.3    15.6    -      -       -      -
   5132c  HIS*     3.6    25.3    -      -       -      +
   5133c  ALA*     4.1     4.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA5052 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5042c  LEU*     5.0     0.7    -      -       +      -
   5048c  LYS      2.8     8.5    +      -       -      +
   5049c  LEU*     4.0    11.9    -      -       +      +
   5051c  GLY*     1.3    75.3    -      -       -      +
   5053c  HIS*     1.3    64.4    +      -       -      +
   5056c  HIS*     3.1    26.5    +      -       -      +
   5499c  CLA      3.5    33.1    -      -       +      +
   5501c  CLA      3.4    41.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS5053 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5049c  LEU*     2.8    33.5    +      -       +      +
   5050c  LEU      3.1     7.7    +      -       -      +
   5052c  ALA*     1.3    81.4    -      -       -      +
   5054c  VAL*     1.3    55.9    +      -       +      +
   5056c  HIS*     3.9     4.3    +      -       -      +
   5057c  ALA*     3.0    30.5    +      -       -      +
   5499c  CLA      2.8    89.7    +      +       +      -
   5502c  CLA      3.6    43.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL5054 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5050c  LEU*     2.7    40.7    +      -       +      +
   5051c  GLY*     3.8     2.5    -      -       -      +
   5053c  HIS*     1.3    71.2    -      -       +      +
   5055c  ALA*     1.3    67.2    +      -       -      +
   5057c  ALA*     3.1    18.1    +      -       -      +
   5058c  GLY*     3.2     7.8    +      -       -      -
   5125c  LEU*     3.0    33.6    -      -       +      +
   5128c  GLY      3.8     4.7    -      -       -      -
   5129c  GLY*     3.3    14.4    -      -       -      +
   5132c  HIS*     5.1     1.8    -      -       +      -
   5502c  CLA      4.5     2.9    -      -       +      +
   5503c  CLA      3.9    46.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA5055 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5051c  GLY      2.7    21.8    +      -       -      +
   5054c  VAL*     1.3    72.7    -      -       -      +
   5056c  HIS*     1.3    57.7    +      -       -      +
   5058c  GLY*     3.0    21.0    +      -       -      -
   5059c  LEU      3.4     2.6    +      -       -      -
   5125c  LEU      4.4     3.8    -      -       -      -
   5126c  GLY*     5.0     0.7    -      -       -      -
   5129c  GLY*     3.5    19.9    -      -       -      +
   5130c  VAL      4.4     0.4    -      -       -      +
   5501c  CLA      3.7    10.8    -      -       +      -
   5504c  BCR      3.2    48.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with HIS5056 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5052c  ALA      3.1    17.3    +      -       -      +
   5053c  HIS*     3.9     4.2    +      -       -      +
   5055c  ALA*     1.3    74.3    -      -       -      +
   5057c  ALA*     1.3    57.7    +      -       -      +
   5058c  GLY      2.5     6.4    +      -       -      -
   5059c  LEU*     2.5    41.6    +      -       +      +
   5060c  ILE*     3.3    34.7    +      -       +      +
   5499c  CLA      3.6    47.0    -      -       +      +
   5500c  CLA      3.0    62.8    +      +       -      -
   5501c  CLA      4.9     2.9    -      -       +      -
   5504c  BCR      3.7     1.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA5057 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5053c  HIS      3.0    16.6    +      -       -      +
   5054c  VAL*     3.1     7.4    +      -       -      +
   5056c  HIS*     1.3    82.5    +      -       -      +
   5058c  GLY*     1.3    55.4    -      -       -      +
   5060c  ILE*     4.3    12.1    -      -       +      -
   5061c  VAL*     3.3    13.0    -      -       -      +
   5125c  LEU*     3.1    18.1    -      -       +      +
   5493c  CLA      4.2     8.1    -      -       +      +
   5499c  CLA      6.1     4.5    -      -       +      -
   5502c  CLA      3.9    34.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY5058 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5054c  VAL      3.2     1.6    +      -       -      -
   5055c  ALA      3.0    10.4    +      -       -      -
   5056c  HIS      2.5     7.9    +      -       -      -
   5057c  ALA*     1.3    76.1    -      -       -      +
   5059c  LEU*     1.3    54.2    +      -       -      -
   5060c  ILE      3.2     1.6    -      -       -      -
   5061c  VAL*     3.8     2.2    -      -       -      +
   5062c  PHE*     2.7    36.0    +      -       -      +
   5122c  SER*     3.8     2.8    -      -       -      -
   5125c  LEU*     4.0    20.6    -      -       -      -
   5504c  BCR      3.6    16.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU5059 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5055c  ALA      3.4     0.8    +      -       -      +
   5056c  HIS*     2.5    20.7    +      -       +      +
   5058c  GLY*     1.3    73.2    -      -       -      +
   5060c  ILE*     1.3    55.7    +      -       -      +
   5062c  PHE*     3.5     8.5    -      -       +      +
   5063c  TRP*     2.9    29.3    +      -       -      +
   5500c  CLA      3.5    44.3    -      -       +      +
   5501c  CLA      3.9    12.1    -      -       +      -
   5504c  BCR      3.4    34.5    -      -       +      -
   5029k  PRO*     4.0    21.3    -      -       +      -
   5032k  PHE*     3.4    37.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE5060 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5056c  HIS*     3.5    37.2    -      -       +      +
   5057c  ALA*     4.5     7.0    -      -       +      +
   5058c  GLY      3.2     0.2    -      -       -      -
   5059c  LEU*     1.3    76.0    -      -       -      +
   5061c  VAL*     1.3    61.0    +      -       -      +
   5063c  TRP*     3.4     2.8    +      -       -      +
   5064c  ALA*     2.8    26.5    +      -       -      +
   5493c  CLA      3.6    63.8    -      -       +      +
   5499c  CLA      4.9     9.0    -      -       +      -
   5500c  CLA      3.7    44.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL5061 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5057c  ALA      3.3    21.5    -      -       -      +
   5058c  GLY      3.4     4.9    +      -       -      +
   5060c  ILE*     1.3    73.0    -      -       -      +
   5062c  PHE*     1.3    70.0    +      -       -      +
   5064c  ALA*     3.0     7.0    +      -       -      +
   5065c  GLY*     2.7    22.7    +      -       -      -
   5118c  HIS*     3.0    42.3    -      -       +      +
   5121c  SER*     4.2     0.2    -      -       -      -
   5122c  SER*     4.1     9.2    -      -       -      +
   5125c  LEU*     3.7    12.6    -      -       +      -
   5477c  UNK      3.9    14.1    -      -       +      -
   5493c  CLA      3.4    28.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE5062 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5058c  GLY      2.7    23.5    +      -       -      +
   5059c  LEU*     3.5    10.5    -      -       +      +
   5061c  VAL*     1.3    73.4    -      -       -      +
   5063c  TRP*     1.3    51.0    +      -       -      +
   5065c  GLY*     3.4     0.9    -      -       -      -
   5066c  ALA*     2.6    43.8    +      -       +      +
   5119c  LEU*     3.4    32.4    -      -       +      +
   5122c  SER*     3.6    19.7    -      -       -      -
   5504c  BCR      4.5    16.8    -      -       +      -
   5025k  LEU*     3.6    21.3    -      -       +      -
   5026k  PRO*     5.4     0.2    -      -       +      -
   5028k  ILE*     3.4    25.1    -      -       +      -
   5029k  PRO*     3.3    42.8    -      -       +      -
   5032k  PHE*     5.7     1.3    -      +       -      -
   5130x  BCR      4.5    16.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP5063 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5059c  LEU      2.9    19.4    +      -       -      +
   5060c  ILE      3.5     6.5    -      -       -      +
   5062c  PHE*     1.3    77.2    -      -       -      +
   5064c  ALA*     1.3    82.6    +      -       -      +
   5065c  GLY      2.8     3.3    +      -       -      -
   5066c  ALA*     3.0     3.3    +      -       -      +
   5067c  MET*     2.8    60.3    +      -       +      +
   5087c  ILE*     4.6     3.8    -      -       +      -
   5088c  LEU*     3.6    34.1    -      -       +      -
   5492c  CLA      3.7    49.4    -      -       +      -
   5493c  CLA      4.3    13.7    -      -       +      -
   5494c  CLA      3.1    52.3    -      +       +      -
   5500c  CLA      3.8    17.9    -      -       +      -
   5026k  PRO*     4.5     8.3    -      -       +      -
   5029k  PRO*     4.9     2.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA5064 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5060c  ILE      2.8    17.7    +      -       -      +
   5061c  VAL*     3.4     7.6    -      -       -      +
   5063c  TRP*     1.3    86.4    -      -       -      +
   5065c  GLY*     1.3    60.1    +      -       -      +
   5068c  THR*     2.8    29.3    +      -       -      -
   5088c  LEU*     3.7     2.7    -      -       -      +
   5118c  HIS*     3.5    22.2    -      -       +      -
   5493c  CLA      3.6    34.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLY5065 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5061c  VAL      2.7    10.7    +      -       -      -
   5062c  PHE      3.4     2.9    -      -       -      -
   5063c  TRP      2.8     0.4    +      -       -      -
   5064c  ALA*     1.3    75.0    -      -       -      +
   5066c  ALA*     1.3    63.4    +      -       -      -
   5067c  MET      3.2     2.7    +      -       -      -
   5068c  THR*     3.2    10.7    +      -       -      -
   5069c  LEU*     3.4    17.3    +      -       -      +
   5115c  GLY      3.0    26.8    -      -       -      +
   5118c  HIS*     3.6     9.6    -      -       -      +
   5119c  LEU*     3.9     8.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA5066 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5062c  PHE*     2.6    33.8    +      -       +      +
   5063c  TRP*     4.0     2.7    -      -       -      +
   5065c  GLY*     1.3    71.6    -      -       -      +
   5067c  MET*     1.3    60.2    +      -       -      +
   5069c  LEU*     3.7     6.2    +      -       -      +
   5070c  PHE*     3.3    14.2    +      -       -      +
   5119c  LEU*     4.1    12.4    -      -       +      +
   5022k  VAL      4.6     1.4    -      -       -      +
   5025k  LEU*     3.7    40.6    -      -       +      +
   5026k  PRO*     3.7    14.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with MET5067 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5063c  TRP*     2.8    43.4    +      -       +      +
   5066c  ALA*     1.3    70.3    -      -       -      +
   5068c  THR*     1.3    54.0    +      -       -      +
   5069c  LEU      3.1     2.0    -      -       -      -
   5070c  PHE*     2.9    24.5    +      -       +      +
   5071c  GLU*     2.7    44.7    +      -       +      +
   5087c  ILE*     4.8     7.9    -      -       +      -
   5088c  LEU*     3.4    21.1    -      -       +      -
   5494c  CLA      2.6    74.0    -      -       +      +
   5026k  PRO*     4.0     8.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR5068 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5064c  ALA      2.8    20.4    +      -       -      -
   5065c  GLY      3.2     1.4    +      -       -      -
   5067c  MET*     1.3    78.1    -      -       -      +
   5069c  LEU*     1.3    56.7    +      -       +      +
   5071c  GLU*     3.5     6.1    -      -       -      +
   5072c  LEU*     3.0    25.5    +      -       -      +
   5088c  LEU*     3.5    13.2    -      -       +      +
   5089c  ILE*     4.4     8.8    -      -       +      +
   5092c  ILE*     4.2    16.2    -      -       +      -
   5111c  PHE*     3.8    17.3    -      -       +      +
   5115c  GLY*     3.6    28.3    -      -       -      +
   5493c  CLA      3.1    17.7    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU5069 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5065c  GLY      3.4    12.3    +      -       -      +
   5066c  ALA*     3.9     7.2    -      -       -      +
   5067c  MET      3.1     0.4    -      -       -      -
   5068c  THR*     1.3    75.9    -      -       +      +
   5070c  PHE*     1.3    56.7    +      -       -      +
   5072c  LEU*     3.8     6.6    -      -       +      +
   5073c  ALA*     2.7    36.7    +      -       -      +
   5112c  PHE*     3.8    49.8    -      -       +      +
   5115c  GLY*     4.1     5.6    -      -       -      -
   5116c  VAL*     4.1    16.8    -      -       +      +
   5119c  LEU*     4.0    26.2    -      -       +      -
   5504c  BCR      4.9    12.3    -      -       +      -
   5011k  LEU*     4.9     5.8    -      -       +      +
   5022k  VAL*     3.8    20.6    -      -       +      +
   5025k  LEU*     5.5     2.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE5070 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5066c  ALA      3.3     4.3    +      -       -      +
   5067c  MET*     2.9    25.2    +      -       -      +
   5069c  LEU*     1.3    78.1    -      -       -      +
   5071c  GLU*     1.3    63.8    +      -       +      +
   5073c  ALA*     4.4     2.7    -      -       -      -
   5074c  HIS*     2.8    66.2    +      +       -      -
   5478c  UNK      3.7    16.6    -      -       +      -
   5494c  CLA      3.3    54.5    -      +       +      -
   5022k  VAL*     4.0     5.1    -      -       -      +
   5023k  ASP*     3.4    37.2    -      -       +      -
   5026k  PRO*     3.6    23.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU5071 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5067c  MET*     2.7    32.8    +      -       +      +
   5068c  THR*     3.5     5.2    -      -       -      +
   5070c  PHE*     1.3    79.1    -      -       +      +
   5072c  LEU*     1.3    52.5    +      -       -      +
   5074c  HIS*     2.6    29.7    +      -       -      +
   5075c  PHE*     2.6    14.0    +      -       -      -
   5085c  GLY      4.3     2.1    -      -       -      +
   5086c  LEU*     3.6    20.8    -      -       +      +
   5087c  ILE*     2.8    34.5    +      -       -      +
   5088c  LEU*     2.9    19.4    +      -       -      +
   5089c  ILE*     2.6    46.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU5072 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5068c  THR      3.0    14.6    +      -       -      +
   5069c  LEU*     3.8     7.9    -      -       +      +
   5071c  GLU*     1.3    80.0    -      -       -      +
   5073c  ALA*     1.3    62.8    +      -       -      +
   5074c  HIS      3.0     1.2    +      -       -      -
   5075c  PHE*     3.3    20.3    +      -       +      +
   5089c  ILE*     3.5     6.0    -      -       +      +
   5108c  THR*     2.7    27.6    -      -       -      +
   5111c  PHE*     4.4    12.6    -      -       +      -
   5112c  PHE*     3.6    50.5    -      -       +      +
   5010k  LYS*     3.3    38.1    +      -       +      +
   5011k  LEU*     4.6     6.1    -      -       +      +
   5012k  PRO*     4.8     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA5073 (chain c). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
   5069c  LEU      2.7    22.8    +      -       -      +
   5070c  PHE      3.8     0.7    -      -       -      +
   5071c  GLU      3.0     0.2    +      -       -      -
   5072c  LEU*     1.3    71.9    -      -       -      +
   5074c  HIS*     1.3    76.1    +      -       +      +
   5010k  LYS      4.3     7.8    +      -       -      -
   5011k  LEU*     3.8    34.4    +      -       +      +
   5019k  ASP*     4.6     7.6    -      -       -      +
   5022k  VAL*     4.0     9.4    -      -       +      -
   5023k  ASP*     4.5     4.0    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il