Contacts of the strand formed by residues 451 - 468 (chain C) in PDB entry 2C11
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR 451 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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443C HIS* 3.2 28.2 + + - -
444C HIS* 3.9 2.0 + - - -
445C SER* 2.8 37.8 + - - +
447C LEU 5.4 0.2 - - - -
449C SER* 3.0 35.2 + - - -
450C HIS* 1.3 74.7 - - - +
452C PHE* 1.3 63.2 + - - +
724C TYR* 3.3 21.1 - + - +
725C PHE 3.4 9.6 - - - +
726C ARG* 4.1 5.2 - - + +
727C GLY 5.3 1.1 - - - -
235D GLY* 3.4 15.5 - - - -
236D ALA* 3.3 32.8 - - - -
237D GLY* 3.1 22.5 + - - -
239D PHE* 3.8 3.5 - - - -
302D LEU* 3.3 35.2 - - + -
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Residues in contact with PHE 452 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442C ARG* 3.7 32.1 - - + -
443C HIS 3.2 22.7 - - - -
444C HIS* 3.3 25.1 - - + +
451C TYR* 1.3 79.8 - - - +
453C GLY* 1.3 59.8 + - - +
454C GLY* 3.6 22.9 - - - -
723C ILE* 4.9 2.9 - - + -
724C TYR* 3.2 11.5 - - - -
725C PHE* 3.1 66.1 + + + -
727C GLY 5.8 0.2 - - - +
302D LEU* 4.6 0.7 - - - -
399D THR* 3.4 32.3 - - + -
402D VAL* 4.2 9.9 - - + -
403D ASP* 3.9 12.3 - - - -
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Residues in contact with GLY 453 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C ARG* 4.7 4.1 - - - -
442C ARG* 3.4 2.3 + - - -
443C HIS* 2.9 32.6 + - - +
452C PHE* 1.3 79.1 - - - +
454C GLY* 1.3 59.0 + - - -
723C ILE 3.3 11.2 - - - -
724C TYR* 4.1 4.3 - - - -
302D LEU* 3.9 24.5 - - - +
693D ASN* 4.3 3.5 - - - +
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Residues in contact with GLY 454 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C ARG* 3.4 17.4 + - - -
442C ARG* 4.1 2.7 - - - -
452C PHE* 3.6 8.9 - - - -
453C GLY* 1.3 74.8 - - - -
455C LEU* 1.3 66.4 + - - +
722C SER* 3.8 3.8 + - - -
723C ILE* 3.0 30.8 + - - +
402D VAL* 3.7 15.7 - - - -
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Residues in contact with LEU 455 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
439C PRO* 4.2 0.4 - - - -
440C LEU* 2.7 57.8 + - + +
441C ARG* 3.2 21.9 + - + +
454C GLY* 1.3 75.1 - - - +
456C ALA* 1.3 68.6 + - - +
457C GLU* 3.2 0.6 + - - -
481C PRO* 5.3 6.1 - - + -
716C SER* 4.0 10.3 - - - +
719C SER* 3.3 35.0 - - - +
721C ASP* 3.1 37.5 - - + +
722C SER* 3.4 4.3 - - - +
723C ILE* 5.0 0.4 - - - +
402D VAL* 3.2 8.4 - - - +
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Residues in contact with ALA 456 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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435C ASN* 4.6 12.7 - - - +
437C GLY* 5.5 1.3 - - - -
438C LEU 4.2 7.2 - - - +
439C PRO* 3.5 11.7 - - - -
455C LEU* 1.3 82.2 - - - +
457C GLU* 1.3 62.9 + - - +
458C THR* 3.7 5.4 + - - -
401D GLY 3.8 9.4 - - - +
402D VAL* 3.1 37.3 - - - +
404D CYS 6.2 1.1 - - - -
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Residues in contact with GLU 457 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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435C ASN* 3.6 5.2 - - - +
436C GLN* 2.7 49.7 + - + +
437C GLY 4.0 0.5 + - - -
438C LEU* 2.8 25.0 + - - +
439C PRO 4.4 0.2 - - - -
440C LEU* 3.7 29.2 - - + +
455C LEU* 3.2 5.0 + - - -
456C ALA* 1.3 71.4 - - - +
458C THR* 1.3 59.5 + - - +
459C VAL* 3.2 15.6 - - + +
480C HIS* 2.7 31.9 + - - +
481C PRO* 3.5 13.9 - - + +
696D THR* 4.6 5.5 + - - -
697D VAL* 3.6 12.4 - - - +
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Residues in contact with THR 458 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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322C ARG* 4.1 5.4 - - - +
433C GLU* 3.3 43.5 - - + +
434C GLN 3.3 6.7 - - - +
435C ASN* 3.7 12.3 + - - +
456C ALA 3.7 5.3 + - - -
457C GLU* 1.3 74.1 - - - +
459C VAL* 1.3 60.9 + - - +
481C PRO* 3.4 23.4 - - - +
312D PRO* 3.7 18.2 - - - +
313D PRO* 3.8 14.1 - - + -
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Residues in contact with VAL 459 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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433C GLU* 3.1 8.3 - - - +
434C GLN* 2.5 43.9 + - + +
436C GLN* 3.5 31.4 - - + +
457C GLU* 3.2 35.2 - - - +
458C THR* 1.3 74.0 - - - +
460C LEU* 1.3 59.0 + - - +
461C VAL* 3.8 13.2 - - + -
478C VAL* 3.4 24.2 - - + -
479C PHE 3.7 6.3 - - - +
480C HIS* 3.5 14.1 - - + +
481C PRO* 4.6 0.2 - - + -
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Residues in contact with LEU 460 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323C PHE* 4.1 22.9 - - + -
330C VAL* 4.4 10.3 - - + -
332C SER* 4.1 22.9 - - - +
335C TRP* 4.5 14.1 - - + -
337C PHE* 4.3 24.2 - - + -
431C VAL* 4.2 9.9 - - + -
432C PHE 2.9 30.7 - - - +
433C GLU* 4.4 6.5 - - + -
459C VAL* 1.3 74.1 - - - +
461C VAL* 1.3 64.5 + - - +
478C VAL* 3.3 6.4 - - - +
479C PHE* 2.9 45.2 + - + +
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Residues in contact with VAL 461 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430C CYS 4.4 0.7 - - - -
431C VAL* 3.2 12.2 - - - +
432C PHE* 2.9 68.3 + - + +
434C GLN* 4.7 0.9 - - + -
459C VAL* 3.8 21.1 - - + +
460C LEU* 1.3 79.9 - - - +
462C VAL* 1.3 71.9 + - - +
463C ARG* 4.5 4.0 - - + +
476C ASP* 3.9 22.4 - - - +
477C THR 3.6 9.9 - - - +
478C VAL* 4.1 13.7 - - + -
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Residues in contact with VAL 462 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C PHE* 3.3 35.0 - - + -
339C PHE* 4.3 26.0 - - + -
349C ILE* 4.4 2.0 - - + -
429C PHE* 5.0 10.3 - - + -
430C CYS 3.7 3.1 - - - +
431C VAL* 4.3 19.5 - - + -
460C LEU* 5.6 0.9 - - + -
461C VAL* 1.3 80.3 - - - +
463C ARG* 1.3 63.1 + - - +
475C TRP 3.6 2.6 - - - +
476C ASP* 3.8 0.2 - - - -
477C THR* 2.8 46.9 + - + +
479C PHE* 4.0 11.0 - - + -
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Residues in contact with ARG 463 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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398C LEU* 3.7 3.6 - - + +
403C ASP 2.6 38.2 + - - -
404C CYS* 3.9 9.9 - - - +
429C PHE* 3.3 8.1 - - - +
430C CYS* 3.0 42.9 + - - -
432C PHE* 4.1 19.3 - - - -
461C VAL* 4.5 5.7 - - + +
462C VAL* 1.3 77.5 - - - +
464C SER* 1.3 72.8 + - - +
465C MET* 4.2 6.7 - - + -
474C VAL* 3.9 15.7 - - + +
475C TRP 3.3 9.6 - - - +
476C ASP* 2.9 26.6 + - - +
436D GLN 5.6 0.4 + - - -
437D GLY 2.9 20.2 + - - -
438D LEU* 3.3 36.0 - - - +
439D PRO* 4.1 0.2 - - - +
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Residues in contact with SER 464 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341C LEU* 3.8 14.1 - - - +
347C PRO* 4.2 20.5 - - - +
395C THR* 3.5 16.1 + - - -
398C LEU* 4.6 1.1 - - - -
428C ALA 3.6 13.3 + - - -
429C PHE* 4.4 15.0 - - - -
463C ARG* 1.3 76.9 - - - +
465C MET* 1.3 69.2 + - - +
466C SER* 4.8 0.5 + - - -
475C TRP* 3.0 34.1 + - - -
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Residues in contact with MET 465 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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395C THR* 3.2 8.1 + - - -
396C THR* 2.8 27.0 + - - +
398C LEU* 3.8 15.5 - - + +
403C ASP* 3.6 35.0 - - + +
428C ALA 4.3 1.4 + - - -
463C ARG* 4.2 2.9 - - + -
464C SER* 1.3 82.7 + - - +
466C SER* 1.3 62.7 + - - +
472C ASP* 5.3 1.6 - - + -
473C TYR 3.2 11.7 - - - +
474C VAL* 3.9 26.5 - - + -
439D PRO* 3.6 27.8 - - + -
442D ARG* 3.1 45.8 - - - +
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Residues in contact with SER 466 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341C LEU* 5.4 0.2 - - - +
347C PRO* 5.1 1.2 - - - +
391C MET* 2.5 43.2 + - - +
394C TYR* 3.4 8.3 - - - -
395C THR* 3.8 2.9 - - - +
464C SER* 4.8 1.4 + - - -
465C MET* 1.3 74.3 - - - +
467C THR* 1.3 62.4 + - - +
468C LEU* 3.9 3.3 + - - -
471C PAQ 3.9 0.7 - - - +
472C ASP* 3.0 3.0 - - - -
473C TYR* 2.7 42.7 + - - +
475C TRP* 3.2 23.0 + - - +
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Residues in contact with THR 467 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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394C TYR* 2.7 30.3 + - - +
396C THR* 3.0 34.8 + - - +
465C MET 4.2 0.2 + - - -
466C SER* 1.3 73.1 - - - +
468C LEU* 1.3 57.2 + - - +
469C LEU 3.3 11.9 + - - +
471C PAQ 3.6 3.8 - - - +
472C ASP* 2.6 29.8 + - - +
442D ARG* 3.3 3.1 + - - -
443D HIS* 3.5 17.7 - - + -
444D HIS 3.4 14.9 + - - +
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Residues in contact with LEU 468 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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386C ASP* 3.3 27.4 - - + +
389C PHE* 3.4 33.4 - - + -
390C GLY 4.3 3.8 - - - +
391C MET* 4.2 11.4 - - + -
394C TYR* 3.6 24.9 - - + -
466C SER* 3.9 3.0 - - - -
467C THR* 1.3 70.4 - - - +
469C LEU* 1.3 58.5 + - - +
470C ASN 2.7 18.4 + - - -
471C PAQ 3.2 42.6 + - - +
473C TYR* 3.3 32.8 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il