Contacts of the helix formed by residues 130 - 154 (chain H) in PDB entry 2EHO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 130 (chain H).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88H LEU* 2.9 40.3 - - + +
93H GLN* 5.4 2.5 - - - +
94H GLU* 5.0 4.2 + - - +
97H ARG* 3.5 29.0 + - - +
128H SER* 2.9 15.4 + - - +
129H PRO* 1.3 85.0 - - + +
131H ASN* 1.3 56.4 + - - +
132H ALA 3.5 2.5 - - - -
133H ASP* 3.3 15.5 + - - +
134H ILE* 3.0 28.7 + - - +
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Residues in contact with ASN 131 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174G LEU* 4.0 12.4 - - + +
123H LEU 4.6 1.0 + - - -
124H LEU* 2.9 55.5 + - - +
127H ASP* 4.2 3.8 - - - -
128H SER* 3.2 36.0 + - - +
129H PRO 3.3 1.8 - - - -
130H GLU* 1.3 74.2 - - - +
132H ALA* 1.3 68.5 + - - +
134H ILE* 3.0 9.6 + - - +
135H SER* 2.8 24.1 + - - -
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Residues in contact with ALA 132 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174G LEU* 3.8 15.1 - - + +
129H PRO 5.0 0.8 + - - -
130H GLU 3.5 0.4 - - - -
131H ASN* 1.3 77.3 - - - +
133H ASP* 1.3 59.3 + - - +
135H SER* 3.3 2.3 + - - -
136H GLN* 3.0 30.9 + - - +
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Residues in contact with ASP 133 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97H ARG* 3.6 27.2 + - - +
129H PRO 4.9 1.6 - - - +
130H GLU* 3.3 21.6 + - - +
131H ASN 3.1 0.4 - - - -
132H ALA* 1.3 77.8 - - - +
134H ILE* 1.3 66.1 + - - +
136H GLN* 3.4 8.1 + - - +
137H SER* 3.0 23.9 + - - -
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Residues in contact with ILE 134 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88H LEU* 3.5 30.7 - - + -
92H TYR* 4.1 25.1 - - + +
97H ARG* 3.9 23.5 - - - +
120H GLY 4.2 8.7 - - - +
123H LEU* 4.4 13.5 - - + +
124H LEU* 3.7 18.6 - - + -
128H SER* 4.6 2.7 - - - +
130H GLU* 3.0 23.3 + - + +
131H ASN* 3.5 19.7 - - - +
133H ASP* 1.3 74.4 - - - +
135H SER* 1.3 62.6 + - - +
137H SER* 3.2 3.9 + - - -
138H LEU* 3.2 27.0 + - + +
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Residues in contact with SER 135 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170G LEU 4.1 8.2 + - - +
173G ASN* 2.7 27.8 + - - +
174G LEU* 2.8 27.1 - - - +
124H LEU* 4.5 8.2 - - - +
131H ASN 2.8 11.4 + - - -
132H ALA 3.3 9.0 - - - -
134H ILE* 1.3 80.0 - - - +
136H GLN* 1.3 63.4 + - - +
137H SER 3.1 0.9 + - - -
138H LEU* 3.3 15.2 + - - +
139H LEU* 3.4 11.1 + - - +
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Residues in contact with GLN 136 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132H ALA 3.0 18.3 + - - +
133H ASP* 4.2 7.9 + - - +
135H SER* 1.3 73.9 - - - +
137H SER* 1.3 62.1 + - - +
139H LEU* 3.7 14.8 - - + +
140H GLN* 3.1 45.2 + - + +
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Residues in contact with SER 137 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97H ARG* 3.1 38.1 + - - +
100H PHE* 4.5 5.7 - - - +
116H PHE* 5.9 0.7 - - - -
133H ASP 3.0 13.4 + - - -
134H ILE* 3.3 10.8 - - - -
135H SER 3.0 0.4 - - - -
136H GLN* 1.3 75.1 - - - +
138H LEU* 1.3 63.9 + - - +
140H GLN* 3.1 8.5 + - - +
141H THR* 2.6 42.1 + - - +
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Residues in contact with LEU 138 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170G LEU* 3.9 15.0 - - + +
173G ASN* 4.4 11.0 - - - +
92H TYR* 3.9 18.8 - - + -
116H PHE* 3.7 34.3 - - + +
117H TYR* 3.5 17.5 - - + +
120H GLY* 3.5 7.9 - - - +
121H SER* 3.4 34.1 - - - +
124H LEU* 5.3 0.7 - - + -
134H ILE* 3.2 19.3 + - + +
135H SER* 3.3 5.8 + - - +
137H SER* 1.3 78.1 - - - +
139H LEU* 1.3 63.5 + - - +
141H THR* 3.5 4.9 + - - -
142H PHE* 3.1 23.9 + - - +
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Residues in contact with LEU 139 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187E ASP* 5.2 1.3 - - - +
139G GLN* 4.3 8.5 - - - +
167G MSE 4.4 17.9 - - + +
170G LEU* 4.3 12.9 - - + +
171G ARG* 4.0 58.6 - - + +
135H SER 3.4 8.8 + - - +
136H GLN* 3.7 17.9 - - + +
137H SER 3.1 0.6 - - - -
138H LEU* 1.3 76.7 - - - +
140H GLN* 1.3 58.6 + - - +
142H PHE* 2.9 4.9 + - - +
143H ILE* 2.9 53.6 + - + +
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Residues in contact with GLN 140 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100H PHE 5.7 0.7 - - - +
101H SER* 3.7 33.7 + - - +
104H PRO* 4.9 1.4 - - - +
136H GLN* 3.1 42.5 + - + +
137H SER* 3.6 5.9 - - - +
139H LEU* 1.3 80.7 - - - +
141H THR* 1.3 57.9 + - - +
143H ILE* 3.4 9.1 + - - +
144H GLY* 2.9 24.4 + - - -
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Residues in contact with THR 141 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100H PHE* 3.9 45.9 - - + -
104H PRO* 3.9 14.9 - - - +
109H LEU* 4.5 0.5 - - - +
116H PHE* 4.3 9.3 - - + -
117H TYR* 3.6 13.4 + - - -
137H SER* 2.6 37.0 + - - +
138H LEU* 3.9 8.1 - - - +
140H GLN* 1.3 70.8 - - + +
142H PHE* 1.3 64.8 + - - +
144H GLY 3.5 0.7 + - - -
145H ARG* 3.1 31.4 + - - +
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Residues in contact with PHE 142 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163G ALA* 3.9 8.5 - - + -
166G HIS* 4.0 24.5 - + + -
167G MSE 3.3 38.6 - - + -
170G LEU* 3.8 15.5 - - + -
13H LEU* 5.1 0.7 - - + -
117H TYR* 3.5 37.7 - + + -
138H LEU 3.1 13.8 + - - +
139H LEU* 2.9 9.2 + - - +
141H THR* 1.3 75.8 + - - +
143H ILE* 1.3 68.2 + - - +
145H ARG* 3.1 10.2 + - - +
146H PHE* 3.2 16.9 + + + +
171H MSE 5.1 6.5 - - + -
172H GLU* 4.6 9.6 - - + -
175H LEU* 3.7 30.7 - - + -
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Residues in contact with ILE 143 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133G ASP* 5.2 2.9 - - - +
136G VAL* 3.4 24.2 - - + +
137G ARG* 3.9 30.4 - - + +
139G GLN* 5.8 5.4 - - + +
167G MSE 3.3 39.7 - - + -
171G ARG* 5.5 2.5 - - - +
139H LEU* 2.9 33.6 + - + +
140H GLN* 3.6 8.5 - - - +
142H PHE* 1.3 77.3 - - - +
144H GLY* 1.3 60.2 + - - +
145H ARG 2.8 7.8 + - - -
146H PHE* 2.9 19.4 + - - +
147H ARG 4.5 1.2 + - - -
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Residues in contact with GLY 144 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137G ARG* 6.4 0.4 - - - -
104H PRO* 3.7 18.6 - - - +
105H ASN* 3.2 25.6 + - - +
140H GLN 2.9 10.6 + - - -
141H THR 3.5 0.4 + - - -
142H PHE 3.3 0.4 - - - -
143H ILE* 1.3 80.2 - - - +
145H ARG* 1.3 61.3 + - - +
147H ARG* 5.3 2.4 + - - +
148H ARG 5.7 0.3 + - - -
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Residues in contact with ARG 145 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104H PRO* 3.7 26.8 + - + +
105H ASN* 3.7 16.5 + - - +
107H VAL 3.4 16.7 + - - -
109H LEU* 2.7 32.8 - - - +
117H TYR* 3.8 3.4 - - - -
141H THR* 3.1 23.8 - - - +
142H PHE 3.1 3.9 + - - +
143H ILE 2.8 3.0 + - - -
144H GLY* 1.3 78.6 - - - +
146H PHE* 1.3 66.1 + - - +
147H ARG 3.5 1.8 - - - -
148H ARG* 3.3 6.9 + - - +
149H ILE* 2.9 31.4 + - + +
167H ARG* 2.9 29.3 + - - +
168H LEU* 3.9 8.6 - - - +
172H GLU* 2.5 49.6 + - - +
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Residues in contact with PHE 146 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132G ALA* 3.8 11.0 - - + -
133G ASP* 3.8 19.1 - - + -
136G VAL* 3.4 36.8 - - + -
159G PHE* 3.2 30.7 - + - -
160G LEU* 3.7 14.8 - - + -
163G ALA* 4.0 20.2 - - + -
167G MSE 5.8 0.9 - - - -
142H PHE* 3.2 18.8 + + + +
143H ILE* 2.9 15.7 + - - +
145H ARG* 1.3 75.9 - - - +
147H ARG* 1.3 65.9 + - - +
149H ILE* 3.0 8.7 + - + +
150H MSE 2.9 49.5 + - + +
175H LEU* 5.5 2.9 - - + -
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Residues in contact with ARG 147 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129G ARG* 4.1 6.8 - - - +
130G VAL* 3.2 44.5 - - - +
133G ASP* 3.2 45.8 + - + +
137G ARG* 5.6 0.4 - - - +
143H ILE 4.5 1.2 + - - -
144H GLY 5.3 2.2 + - - +
145H ARG 3.5 0.6 - - - -
146H PHE* 1.3 83.6 - - - +
148H ARG* 1.3 60.5 + - - +
150H MSE 3.6 6.5 + - - +
151H ASP* 2.9 68.8 + - - +
69K GLU* 5.0 5.8 + - - -
73K LYS* 4.9 14.9 - - - +
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Residues in contact with ARG 148 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105H ASN* 3.4 49.1 + - - +
144H GLY 5.7 0.2 + - - -
145H ARG* 3.3 4.2 + - + +
146H PHE 3.2 0.8 - - - -
147H ARG* 1.3 78.1 - - - +
149H ILE* 1.3 66.8 + - + +
151H ASP* 4.4 5.5 - - + +
152H SER* 3.5 21.5 + - - -
164H LEU* 3.8 26.8 - - + +
67K ASP* 3.2 26.8 + - - -
69K GLU* 3.5 39.7 + - - +
70K LYS* 4.9 10.7 - - - +
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Residues in contact with ILE 149 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159G PHE* 4.2 19.3 - - + -
145H ARG* 2.9 31.6 + - + +
146H PHE* 3.0 8.8 + - - +
148H ARG* 1.3 79.0 - - + +
150H MSE 1.3 58.6 + - - +
152H SER* 3.9 1.6 - - - -
153H SER* 3.0 28.1 + - - -
164H LEU* 4.8 6.3 - - + -
168H LEU* 3.1 38.1 - - + -
172H GLU* 4.1 35.2 - - + +
175H LEU* 4.3 11.7 - - + -
176H PHE* 4.0 11.8 - - + +
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Residues in contact with MSE 150 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128G LEU* 6.1 1.6 - - + -
129G ARG* 3.6 43.7 - - + +
132G ALA* 4.0 13.5 - - + -
133G ASP* 5.8 0.4 - - - -
156G SER* 5.2 5.2 - - - -
159G PHE* 3.6 30.3 - - + -
160G LEU* 4.6 8.5 - - + -
146H PHE* 2.9 44.8 + - + +
147H ARG* 3.8 7.2 - - - +
149H ILE* 1.3 77.4 - - - +
151H ASP* 1.3 69.5 + - - +
153H SER* 3.2 2.1 + - - -
154H GLN* 2.9 53.8 + - - +
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Residues in contact with ASP 151 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129G ARG* 3.7 27.1 - - - +
147H ARG* 2.9 50.0 + - - +
148H ARG* 4.4 5.5 - - + +
149H ILE 3.6 0.2 - - - -
150H MSE 1.3 77.6 - - - +
152H SER* 1.3 58.4 + - - +
154H GLN 3.8 0.9 - - - -
155H ASN* 2.7 41.7 + - - +
69K GLU* 4.0 14.5 - - - +
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Residues in contact with SER 152 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148H ARG 3.5 9.4 + - - -
149H ILE 3.9 0.4 - - - -
150H MSE 3.1 0.4 - - - -
151H ASP* 1.3 78.4 - - - +
153H SER* 1.3 65.9 + - - +
155H ASN* 3.3 19.1 + - - +
156H ALA 5.4 0.7 - - - +
157H TYR* 6.0 0.5 - - - -
161H THR* 3.8 21.0 + - - +
164H LEU* 3.2 33.1 - - - +
176H PHE* 3.2 17.9 - - - -
180H GLN* 4.4 0.5 - - - +
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Residues in contact with SER 153 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159G PHE* 3.6 10.4 - - - -
149H ILE 3.0 16.9 + - - -
150H MSE 3.2 8.1 + - - -
152H SER* 1.3 76.1 - - - +
154H GLN* 1.3 62.9 + - - +
155H ASN 3.3 3.8 + - - +
176H PHE* 3.2 47.9 - - - -
179H GLY* 3.4 19.0 - - - +
180H GLN* 2.8 29.6 - - - +
183H LEU* 4.5 1.9 - - - +
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Residues in contact with GLN 154 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125G ILE* 3.7 6.6 - - + +
129G ARG* 3.4 41.5 + - - +
155G THR 5.3 4.7 - - - +
156G SER* 3.3 29.8 + - - +
159G PHE* 3.9 16.7 - - + +
150H MSE 2.9 48.6 + - - +
151H ASP 3.8 1.8 - - - +
153H SER* 1.3 84.8 + - - +
155H ASN* 1.3 58.3 + - - +
179H GLY* 4.4 12.8 - - - +
183H LEU* 3.8 21.4 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il