Contacts of the helix formed by residues 130 - 155 (chain L) in PDB entry 2EHO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 130 (chain L).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88L LEU* 3.7 17.4 - - - +
93L GLN* 5.0 3.6 - - - +
94L GLU* 4.7 2.8 + - - +
97L ARG* 2.7 44.7 + - - +
128L SER* 2.9 14.1 + - - +
129L PRO* 1.3 85.5 - - + +
131L ASN* 1.3 59.2 + - - +
132L ALA 3.4 2.5 - - - -
133L ASP* 3.2 10.4 + - - +
134L ILE* 2.8 35.0 + - + +
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Residues in contact with ASN 131 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174K LEU* 4.2 16.6 - - + +
123L LEU 4.8 1.6 + - - -
124L LEU* 3.1 49.4 - - - +
127L ASP* 3.6 10.7 - - - +
128L SER* 2.9 35.2 + - - +
129L PRO 3.2 2.2 - - - -
130L GLU* 1.3 75.3 - - - +
132L ALA* 1.3 67.7 + - - +
134L ILE* 3.1 6.8 + - - +
135L SER* 2.8 28.8 + - - -
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Residues in contact with ALA 132 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174K LEU* 4.5 14.5 - - + +
129L PRO 4.6 4.9 + - - +
130L GLU 3.4 0.4 - - - -
131L ASN* 1.3 77.1 - - - +
133L ASP* 1.3 69.7 + - - +
135L SER* 3.9 1.2 - - - -
136L GLN* 3.1 27.9 + - - +
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Residues in contact with ASP 133 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97L ARG* 3.2 37.2 + - - +
129L PRO 5.3 1.0 - - - +
130L GLU* 3.2 11.8 + - - +
131L ASN 3.1 0.6 - - - -
132L ALA* 1.3 85.9 - - - +
134L ILE* 1.3 60.4 + - - +
136L GLN* 3.9 4.7 - - - +
137L SER* 3.1 23.0 + - - -
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Residues in contact with ILE 134 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88L LEU* 3.7 40.8 - - + -
92L TYR* 3.8 41.3 - - + +
97L ARG* 4.2 8.3 - - - +
120L GLY* 4.6 3.1 - - - +
123L LEU* 5.4 3.1 - - + +
124L LEU* 4.0 19.3 - - + -
128L SER* 5.1 0.7 - - - +
130L GLU* 2.8 29.0 + - + +
131L ASN* 3.8 11.4 - - - +
133L ASP* 1.3 71.1 - - - +
135L SER* 1.3 68.0 + - - +
137L SER* 3.0 6.9 + - - -
138L LEU* 3.0 28.4 + - + +
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Residues in contact with SER 135 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170K LEU 4.0 6.1 + - - +
171K ARG 5.9 0.2 - - - -
173K ASN* 2.8 26.4 + - - +
174K LEU* 3.6 27.6 - - - +
124L LEU* 4.4 5.3 - - - +
131L ASN 2.8 21.0 + - - -
132L ALA 3.9 1.3 - - - -
134L ILE* 1.3 74.3 - - - +
136L GLN* 1.3 63.6 + - - +
138L LEU* 3.3 21.6 + - - +
139L LEU* 3.3 13.7 + - - +
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Residues in contact with GLN 136 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132L ALA 3.1 16.8 + - - +
133L ASP* 3.9 5.4 - - - +
135L SER* 1.3 76.2 - - - +
137L SER* 1.3 66.9 + - - +
139L LEU* 3.6 7.6 + - + +
140L GLN* 2.7 47.9 + - - +
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Residues in contact with SER 137 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97L ARG* 3.5 33.8 + - - +
100L PHE* 4.4 8.7 - - - +
116L PHE* 5.3 3.0 - - - -
133L ASP 3.1 14.6 + - - -
134L ILE* 3.0 10.6 + - - -
136L GLN* 1.3 75.4 + - - +
138L LEU* 1.3 61.3 + - - +
140L GLN* 3.0 8.6 + - - +
141L THR* 2.5 42.7 + - - +
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Residues in contact with LEU 138 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170K LEU* 4.3 11.2 - - + -
173K ASN* 3.9 20.4 - - - +
92L TYR* 4.0 16.6 - - + -
116L PHE* 3.8 39.0 - - + +
117L TYR* 3.5 26.2 - - + +
120L GLY* 3.9 4.3 - - - +
121L SER* 3.6 27.4 - - - +
124L LEU* 5.2 0.9 - - + -
134L ILE* 3.0 22.1 + - + +
135L SER* 3.6 8.3 - - - +
137L SER* 1.3 77.6 - - - +
139L LEU* 1.3 62.8 + - - +
141L THR* 3.3 7.7 + - - +
142L PHE* 3.1 16.6 + - - +
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Residues in contact with LEU 139 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139K GLN* 4.5 10.1 - - - +
167K MSE 4.3 14.1 - - + +
170K LEU* 4.1 26.6 - - + +
171K ARG* 4.0 43.1 - - + +
135L SER 3.3 8.7 + - - +
136L GLN* 3.8 11.2 - - + +
137L SER 3.2 0.4 - - - -
138L LEU* 1.3 78.0 - - - +
140L GLN* 1.3 65.3 + - - +
142L PHE* 3.0 3.1 + - - +
143L ILE* 3.0 54.2 + - + +
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Residues in contact with GLN 140 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101L SER* 2.8 43.2 + - - +
104L PRO* 4.6 4.7 - - + +
136L GLN* 2.7 42.7 + - - +
137L SER* 3.5 6.1 - - - +
139L LEU* 1.3 79.7 - - - +
141L THR* 1.3 62.7 + - + +
143L ILE* 3.6 8.0 + - - +
144L GLY* 3.1 19.8 + - - -
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Residues in contact with THR 141 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100L PHE* 4.0 28.3 - - + -
104L PRO* 3.8 17.5 - - - +
109L LEU* 4.6 1.2 - - - +
116L PHE* 4.0 19.3 - - + -
117L TYR* 3.7 10.2 + - - -
137L SER* 2.5 49.6 + - - +
138L LEU* 3.5 9.6 - - - +
140L GLN* 1.3 71.6 - - + +
142L PHE* 1.3 61.5 + - - +
144L GLY 3.6 0.8 + - - -
145L ARG* 2.8 34.5 + - - +
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Residues in contact with PHE 142 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163K ALA* 3.9 17.5 - - + -
166K HIS* 4.1 10.5 - - + -
167K MSE 3.6 36.3 - - + -
170K LEU* 4.3 15.3 - - + -
117L TYR* 3.6 31.2 - + + -
138L LEU 3.1 6.2 + - - +
139L LEU 3.0 8.9 + - - +
141L THR* 1.3 74.9 + - - +
143L ILE* 1.3 58.8 + - - +
144L GLY 2.9 1.1 - - - -
145L ARG* 2.5 28.1 + - - -
146L PHE* 3.0 21.3 + + + -
149L ILE* 4.4 18.8 - - + -
171L MSE 4.5 16.4 - - + -
172L GLU* 4.8 2.5 - - + -
175L LEU* 3.7 30.7 - - + -
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Residues in contact with ILE 143 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133K ASP* 5.4 1.2 - - - +
136K VAL* 3.4 38.7 - - + +
137K ARG* 3.9 36.9 + - + +
139K GLN* 5.4 4.0 - - + +
167K MSE 3.7 19.1 - - + -
171K ARG* 4.8 2.9 - - - +
139L LEU* 3.0 39.9 - - + +
140L GLN* 3.7 8.1 - - + +
142L PHE* 1.3 76.5 - - - +
144L GLY* 1.3 62.8 + - - +
145L ARG 3.4 0.2 + - - -
146L PHE* 3.5 15.8 + - - +
147L ARG 4.8 0.9 + - - -
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Residues in contact with GLY 144 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137K ARG* 4.0 22.0 + - - -
104L PRO* 4.5 14.1 - - - -
105L ASN* 3.1 21.7 + - - +
140L GLN 3.1 13.0 + - - -
141L THR 4.0 2.9 - - - -
142L PHE 2.8 2.6 + - - -
143L ILE* 1.3 81.6 - - - +
145L ARG* 1.3 56.7 + - - -
146L PHE 3.8 0.2 + - - -
147L ARG* 4.9 2.9 + - - +
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Residues in contact with ARG 145 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100L PHE* 6.3 0.2 - - - -
104L PRO* 3.3 27.0 + - + -
105L ASN* 3.0 22.2 + - - +
107L VAL* 2.8 27.9 + - - +
109L LEU* 3.0 23.4 - - - +
117L TYR* 4.3 0.2 - - - +
141L THR* 2.8 22.4 - - - +
142L PHE 2.5 12.1 + - - +
144L GLY* 1.3 73.9 - - - -
146L PHE* 1.3 62.6 + - - +
147L ARG 3.4 1.8 - - - -
148L ARG* 3.3 6.3 + - + +
149L ILE* 3.0 34.9 + - + +
167L ARG* 3.1 21.0 + - - +
168L LEU* 3.6 11.6 - - - +
172L GLU* 2.7 39.6 + - - +
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Residues in contact with PHE 146 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132K ALA* 4.0 3.4 - - + -
133K ASP* 3.9 27.1 - - + -
136K VAL* 4.2 24.5 - - + -
159K PHE* 3.9 14.1 - + - -
160K LEU* 4.1 15.3 - - + -
163K ALA* 3.6 31.4 - - + -
167K MSE 5.7 0.4 - - - -
142L PHE* 3.0 20.8 + + + +
143L ILE* 3.7 15.0 - - - +
144L GLY 3.5 1.4 - - - -
145L ARG* 1.3 75.7 - - - +
147L ARG* 1.3 70.3 + - - +
149L ILE* 3.0 10.9 + - + +
150L MSE 2.8 61.8 + - + +
175L LEU* 5.0 3.1 - - + -
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Residues in contact with ARG 147 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129K ARG* 3.9 14.3 - - - +
130K VAL* 3.4 33.9 - - - +
133K ASP* 2.5 32.8 + - - +
137K ARG* 5.0 8.3 - - - +
105L ASN* 5.9 0.4 - - - +
143L ILE 4.8 1.6 + - - -
144L GLY 4.9 2.4 + - - +
145L ARG 3.4 0.4 - - - -
146L PHE* 1.3 84.2 - - - +
148L ARG* 1.3 59.6 + - + +
150L MSE 3.0 11.7 + - - +
151L ASP* 2.6 70.5 + - - +
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Residues in contact with ARG 148 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105L ASN* 2.7 61.2 + - - +
145L ARG* 3.3 9.5 + - + +
147L ARG* 1.3 81.1 - - + +
149L ILE* 1.3 61.6 + - + +
151L ASP* 4.0 6.1 - - - +
152L SER* 3.2 24.6 + - - -
164L LEU* 3.5 25.3 - - + +
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Residues in contact with ILE 149 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159K PHE* 4.5 8.3 - - + -
142L PHE* 4.4 12.3 - - + -
145L ARG* 3.0 27.6 + - + +
146L PHE* 3.0 8.6 + - + +
148L ARG* 1.3 77.7 - - + +
150L MSE 1.3 60.4 + - - +
152L SER* 3.3 4.8 + - - -
153L SER* 2.8 38.0 + - - +
164L LEU* 5.0 2.9 - - + -
168L LEU* 3.9 19.5 - - + -
172L GLU* 3.5 52.5 - - + +
175L LEU* 4.7 6.5 - - + -
176L PHE* 4.3 13.6 - - + +
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Residues in contact with MSE 150 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128K LEU* 6.5 0.2 - - - -
129K ARG* 3.1 59.3 - - + +
132K ALA* 4.0 9.2 - - - -
133K ASP* 4.3 1.6 - - + +
159K PHE* 3.6 33.8 - - + -
160K LEU* 4.5 7.0 - - - -
146L PHE* 2.8 51.9 + - + +
147L ARG* 3.8 12.3 - - - +
149L ILE* 1.3 69.7 - - - +
151L ASP* 1.3 68.7 + - - +
153L SER* 3.0 15.3 + - - -
154L GLN* 3.4 16.9 + - + +
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Residues in contact with ASP 151 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129K ARG* 3.3 28.5 + - - +
147L ARG* 2.6 64.1 + - - +
148L ARG* 4.0 6.5 - - - +
150L MSE 1.3 74.7 - - - +
152L SER* 1.3 60.1 + - - +
154L GLN* 4.1 1.4 + - - +
155L ASN* 2.9 27.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 152 (chain L).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148L ARG 3.2 6.8 + - - -
149L ILE 3.7 2.9 - - - -
151L ASP* 1.3 76.8 - - - +
153L SER* 1.3 71.9 + - - +
155L ASN* 3.2 17.4 - - - +
161L THR* 4.0 19.4 - - - +
164L LEU* 3.1 35.1 - - - +
176L PHE* 3.3 22.9 - - - -
180L GLN* 3.8 0.5 + - - -
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Residues in contact with SER 153 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159K PHE* 3.4 19.7 - - - -
149L ILE 2.8 23.2 + - - -
150L MSE 3.0 12.3 + - - -
152L SER* 1.3 73.5 - - - +
154L GLN* 1.3 57.9 + - - -
155L ASN 2.4 25.4 + - - +
176L PHE* 3.4 18.9 - - - -
179L GLY* 3.9 22.0 - - - -
180L GLN* 3.0 22.7 + - - +
183L LEU* 5.0 0.5 - - - +
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Residues in contact with GLN 154 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125K ILE* 4.0 14.4 - - + +
128K LEU* 5.7 0.4 - - - +
129K ARG* 3.1 40.1 + - - +
155K THR* 4.9 2.8 + - - +
156K SER* 2.5 41.8 + - - +
159K PHE* 5.7 5.9 - - + +
150L MSE 3.4 17.8 + - + +
151L ASP 4.3 0.7 - - - +
153L SER* 1.3 79.6 - - - +
155L ASN* 1.3 56.0 + - - +
156L ALA 4.0 0.9 + - - -
179L GLY* 3.9 20.1 + - - +
183L LEU* 3.1 33.7 - - + +
----------------------------------------------------------
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Residues in contact with ASN 155 (chain L).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129K ARG* 6.0 1.8 - - - +
151L ASP 2.9 23.5 + - - +
152L SER* 3.2 14.5 - - - +
153L SER 2.4 29.3 + - - +
154L GLN* 1.3 70.2 - - - +
156L ALA* 1.3 90.0 + - - +
157L TYR* 3.4 2.6 + - - -
158L ASN* 4.0 9.7 + - - -
161L THR* 5.2 2.1 - - + +
180L GLN* 4.0 5.5 + - - +
183L LEU* 5.3 2.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il