Contacts of the helix formed by residues 58 - 94 (chain F) in PDB entry 2EHO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 58 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46F ASP* 3.5 45.3 - - + +
49F GLU* 3.9 15.5 - - + -
50F ALA* 5.1 1.1 - - + -
55F ARG* 4.0 25.4 - - + +
56F SER 3.1 1.2 - - - -
57F ASP* 1.3 88.5 - - - +
59F ILE* 1.3 53.3 + - - +
60F PRO* 3.4 1.3 - - - -
61F THR* 3.1 7.8 + - - -
62F ILE* 2.8 43.3 + - + +
41H PRO* 3.3 32.8 - - + +
42H ARG* 3.8 23.6 - - - +
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Residues in contact with ILE 59 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50F ALA* 4.6 13.2 - - + -
56F SER* 3.3 27.1 - - - +
58F LEU* 1.3 76.4 - - - +
60F PRO* 1.3 59.9 - - + +
62F ILE* 2.7 22.1 + - + +
63F LYS* 2.6 67.8 + - + +
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Residues in contact with PRO 60 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56F SER 4.6 2.0 - - - +
57F ASP* 4.0 11.7 - - - +
58F LEU 3.6 2.9 - - - -
59F ILE* 1.3 96.6 - - + +
61F THR* 1.3 56.2 + - - +
63F LYS* 3.3 8.5 + - + +
64F PHE 2.8 24.4 + - - -
38H THR* 4.1 17.9 - - + +
39H ALA 4.4 10.3 - - - +
40H MSE 3.3 29.7 - - + +
76H LEU* 4.7 0.3 - - - +
83H ILE* 3.6 28.9 - - + -
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Residues in contact with THR 61 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46F ASP* 4.3 4.7 - - - +
57F ASP 5.2 0.2 + - - -
58F LEU* 3.1 13.9 + - + +
60F PRO* 1.3 75.5 - - - +
62F ILE* 1.3 65.9 + - - +
64F PHE* 3.4 2.9 + - - +
65F ARG* 3.1 53.7 + - + +
40H MSE 3.6 2.1 - - - +
41H PRO* 2.8 38.3 + - - +
42H ARG* 4.7 0.7 - - + -
43H LEU* 3.0 32.3 - - + +
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Residues in contact with ILE 62 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43F ASN* 3.2 39.2 + - - +
46F ASP* 4.1 18.4 - - + +
47F VAL* 3.4 43.5 - - + +
50F ALA* 4.6 2.7 - - + -
58F LEU* 2.8 26.8 + - + +
59F ILE* 2.7 23.8 + - + +
61F THR* 1.3 77.2 - - - +
63F LYS* 1.3 59.2 + - + +
65F ARG* 2.9 3.4 + - - +
66F HIS* 2.8 26.3 + - + +
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Residues in contact with LYS 63 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59F ILE* 2.6 43.2 + - + +
60F PRO* 3.6 9.2 - - + +
62F ILE* 1.3 76.0 - - + +
64F PHE* 1.3 61.3 + - - +
66F HIS* 3.2 8.8 + - - +
67F CYS* 3.1 27.4 + - - -
76H LEU* 3.9 15.0 - - + -
82H ARG* 5.8 3.4 - - - +
83H ILE* 5.3 12.8 - - + +
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Residues in contact with PHE 64 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1F MSE 3.9 41.5 - - + -
2F PHE* 3.9 24.7 - + - -
60F PRO 2.8 16.6 + - - +
61F THR* 3.6 9.6 - - - +
62F ILE 3.2 0.2 - - - -
63F LYS* 1.3 77.5 - - - +
65F ARG* 1.3 63.8 + - + +
67F CYS* 3.4 5.0 + - - +
68F SER* 3.3 19.0 + - - -
40H MSE 4.2 17.0 - - + -
43H LEU* 4.4 14.6 - - + -
47H PHE* 4.1 26.0 - + - -
68H LEU* 4.9 2.5 - - + -
72H LEU* 3.8 22.8 - - + +
76H LEU* 3.8 26.6 - - + +
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Residues in contact with ARG 65 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1F MSE 3.9 16.0 - - + +
39F LEU* 3.4 33.2 - - + +
42F GLN* 3.0 37.4 + - - +
43F ASN* 2.7 55.2 + - + +
46F ASP* 2.7 34.4 + - - +
61F THR* 3.1 31.3 + - + +
62F ILE* 2.9 5.3 + - - +
64F PHE* 1.3 80.1 - - + +
66F HIS* 1.3 55.9 + - - +
68F SER* 3.2 6.9 + - - -
69F LEU* 3.0 31.6 + - + +
42H ARG* 4.5 10.7 - - - +
43H LEU* 5.6 0.4 - - + +
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Residues in contact with HIS 66 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152E ASN 5.8 1.1 - - - -
153E LEU* 4.9 13.9 - - + -
43F ASN* 4.1 7.7 + - - +
62F ILE* 2.8 13.6 + - + +
63F LYS* 3.2 11.9 + - - +
65F ARG* 1.3 73.7 - - - +
67F CYS* 1.3 65.6 + - - +
69F LEU* 3.2 17.9 + - - +
70F LEU* 2.9 61.4 + - + +
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Residues in contact with CYS 67 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63F LYS 3.1 17.9 + - - -
64F PHE 3.5 8.5 - - - +
65F ARG 3.3 0.2 - - - -
66F HIS* 1.3 75.5 - - - +
68F SER* 1.3 58.7 + - - +
70F LEU* 3.2 9.7 + - - +
71F ARG* 2.8 29.3 + - - +
71H TRP* 3.8 10.9 - - + -
72H LEU* 3.7 18.6 - - + -
75H GLY* 3.7 31.9 - - - -
76H LEU* 3.9 14.4 - - - -
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Residues in contact with SER 68 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
0F MSE 4.4 1.1 - - - -
1F MSE 2.9 28.8 + - - -
3F CYS* 3.8 12.3 - - - -
39F LEU* 3.8 20.9 - - - -
64F PHE* 3.3 16.5 + - - -
65F ARG* 3.2 10.4 + - - -
66F HIS 3.2 0.4 - - - -
67F CYS* 1.3 76.8 - - - +
69F LEU* 1.3 62.3 + - - +
71F ARG* 3.0 2.1 + - - +
72F ASN* 2.7 34.5 + - - -
71H TRP* 4.0 6.1 - - - -
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Residues in contact with LEU 69 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150E PRO* 4.5 6.1 - - + -
153E LEU* 4.9 15.7 - - + -
36F MSE 3.3 63.4 - - + +
39F LEU* 3.9 14.4 - - + +
40F TYR* 4.2 22.7 - - + +
43F ASN* 4.8 6.7 - - - +
65F ARG 3.0 18.9 + - - +
66F HIS* 3.5 25.1 - - - +
68F SER* 1.3 77.9 - - - +
70F LEU* 1.3 64.7 + - - +
72F ASN* 3.3 4.0 + - - +
73F ARG* 3.0 17.7 + - - +
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Residues in contact with LEU 70 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153E LEU* 3.6 27.6 - - + -
66F HIS* 2.9 46.5 + - + +
67F CYS* 3.7 7.9 - - - +
69F LEU* 1.3 75.4 - - - +
71F ARG* 1.3 61.9 + - - +
73F ARG* 3.4 18.8 + - - +
74F ARG* 3.0 24.1 + - - +
19H PHE* 5.4 0.9 - - - -
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Residues in contact with ARG 71 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3F CYS* 3.4 15.5 - - - -
7F MSE 2.9 35.8 - - - +
67F CYS 2.8 10.2 + - - +
68F SER 3.0 8.7 + - - +
70F LEU* 1.3 73.4 - - - +
72F ASN* 1.3 67.8 + - - +
74F ARG* 3.0 21.5 + - - +
75F CYS* 2.9 35.2 + - - -
25H ILE* 3.1 21.6 + - - +
28H SER* 2.8 37.2 - - - -
29H HIS* 4.3 2.6 - - - -
71H TRP* 3.1 60.9 - - + +
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Residues in contact with ASN 72 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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0F MSE 4.5 1.6 + - - -
3F CYS* 3.2 32.8 - - - +
6F ALA* 3.7 11.1 + - - +
32F VAL* 3.4 23.7 - - + +
35F GLU* 4.0 10.1 + - - +
36F MSE 3.7 23.1 - - + +
39F LEU* 4.2 14.6 - - - +
68F SER 2.7 30.7 + - - -
69F LEU* 3.7 6.4 - - - +
71F ARG* 1.3 75.9 - - - +
73F ARG* 1.3 59.6 + - - +
75F CYS* 3.5 1.2 + - - +
76F THR* 2.9 30.2 + - - +
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Residues in contact with ARG 73 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149E MSE 3.1 40.2 - - + -
152E ASN 5.0 0.8 + - - -
153E LEU* 3.2 31.1 + - + +
155E LYS 3.2 23.6 + - - -
156E VAL* 4.3 15.3 - - + +
36F MSE 4.1 3.7 - - + +
69F LEU 3.0 12.6 + - - +
70F LEU* 3.6 19.0 + - - +
71F ARG 3.1 0.4 - - - -
72F ASN* 1.3 74.7 - - - +
74F ARG* 1.3 64.7 + - - +
76F THR* 2.7 25.0 - - - +
77F VAL* 2.9 21.3 + - + +
19H PHE* 4.9 16.0 - - - -
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Residues in contact with ARG 74 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70F LEU 3.0 13.8 + - - +
71F ARG* 3.0 35.9 + - - +
73F ARG* 1.3 77.3 - - - +
75F CYS* 1.3 61.2 - - - +
77F VAL* 3.9 1.6 - - - +
78F ALA* 3.0 23.7 + - - +
17H GLU* 2.9 33.0 + - - +
18H ASN 3.3 24.2 + - - -
19H PHE* 2.8 57.5 + - + +
24H ASP* 3.8 6.5 - - - +
25H ILE* 3.1 30.3 - - + +
28H SER* 4.4 1.2 + - - -
71H TRP* 5.6 1.4 - - - +
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Residues in contact with CYS 75 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3F CYS* 5.7 0.4 - - - -
6F ALA* 3.6 28.7 - - + +
7F MSE 3.1 35.9 - - - -
9F LEU* 5.8 1.1 - - - -
10F ILE* 3.5 12.3 - - + +
71F ARG* 2.9 31.8 + - - +
72F ASN 3.9 0.4 - - - +
74F ARG* 1.3 76.2 - - - +
76F THR* 1.3 59.6 + - - +
78F ALA 3.3 0.3 + - - -
79F TYR* 2.8 32.6 + - - +
25H ILE* 3.9 15.5 - - - -
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Residues in contact with THR 76 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145E ALA* 4.2 6.4 - - + +
146E LEU* 5.8 0.4 - - + -
149E MSE 4.5 12.6 - - + -
6F ALA* 5.3 0.6 - - - +
9F LEU* 5.1 6.7 - - - -
29F LEU* 3.3 28.1 - - - +
32F VAL* 4.8 9.9 - - - -
33F LEU* 5.5 3.2 - - + +
36F MSE 5.0 3.6 - - - -
72F ASN 2.9 19.2 + - - +
73F ARG* 2.7 31.4 - - - +
75F CYS* 1.3 75.7 - - - +
77F VAL* 1.3 61.8 + - + +
79F TYR* 3.6 6.5 - - - +
80F LEU* 3.0 41.3 + - + +
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Residues in contact with VAL 77 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141E LEU* 4.8 15.9 - - + +
146E LEU* 4.3 16.2 - - + -
156E VAL* 4.0 32.8 - - + -
158E LEU* 5.8 0.9 - - + -
161E ALA* 5.5 0.7 - - + -
73F ARG* 2.9 26.9 + - + +
74F ARG 3.9 3.1 - - - +
76F THR* 1.3 81.8 - - + +
78F ALA* 1.3 51.3 + - - +
80F LEU* 3.2 8.3 + - - +
81F TYR* 2.7 36.6 + - + +
19H PHE* 4.1 11.0 - - + -
20H LEU* 3.6 21.8 - - + -
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Residues in contact with ALA 78 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10F ILE* 4.2 4.3 - - + -
74F ARG 3.0 17.4 + - - +
75F CYS 3.9 2.5 - - - +
77F VAL* 1.3 73.8 - - - +
79F TYR* 1.3 67.2 + - - +
81F TYR* 4.3 2.7 - - - +
82F ASP* 3.0 27.0 + - - +
19H PHE 4.7 0.7 - - - +
20H LEU* 3.9 39.5 - - + +
22H LEU* 4.0 14.3 - - + +
25H ILE* 4.3 7.4 - - + -
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Residues in contact with TYR 79 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9F LEU* 3.7 44.4 - - + -
10F ILE* 3.9 9.1 - - + +
12F GLU* 4.3 6.2 + - - -
13F LEU* 3.4 41.7 - - + +
22F PRO* 5.6 0.7 - - - +
23F ALA 4.0 3.5 + - - -
24F PHE* 3.9 15.1 - + - -
25F ASN* 3.0 40.0 + - - -
29F LEU* 5.4 6.1 - - + -
75F CYS 2.8 18.1 + - - +
76F THR* 3.6 6.5 - - - +
78F ALA* 1.3 78.1 - - - +
80F LEU* 1.3 74.8 + - + +
83F ARG* 3.1 54.1 + - - +
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Residues in contact with LEU 80 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140E TYR* 3.7 23.5 - - + +
141E LEU* 4.0 22.0 - - + +
144E VAL* 4.2 10.5 - - + -
145E ALA* 3.7 30.3 - - + -
146E LEU* 5.0 4.9 - - + -
24F PHE* 3.9 25.8 - - + -
29F LEU* 4.8 4.0 - - + -
76F THR* 3.0 28.0 + - - +
77F VAL* 3.2 5.8 + - - +
79F TYR* 1.3 83.6 - - + +
81F TYR* 1.3 65.6 + - - +
82F ASP 3.2 0.3 + - - -
83F ARG* 3.2 5.7 + - - +
84F LEU* 3.2 26.5 + - - +
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Residues in contact with TYR 81 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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101E GLU 4.2 7.6 + - - -
102E LYS* 4.4 6.8 + - - -
104E PHE* 3.7 33.2 - + - -
133E PHE* 5.3 2.3 - + - -
137E THR* 5.3 7.2 - - + -
141E LEU* 4.7 13.2 - - + +
158E LEU* 5.8 4.7 - - + -
162E VAL* 4.3 15.3 - - + +
163E PRO* 6.0 0.2 - - + -
77F VAL* 2.7 23.9 + - + +
78F ALA* 4.3 3.6 - - - +
80F LEU* 1.3 73.7 - - - +
82F ASP* 1.3 59.5 + - - +
84F LEU* 3.7 18.6 + - + +
85F LEU* 3.2 48.0 + - + +
8H VAL* 3.8 27.1 - - + -
20H LEU* 3.7 28.9 - - + -
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Residues in contact with ASP 82 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13F LEU* 3.7 14.5 - - + +
78F ALA 3.0 20.2 + - - +
81F TYR* 1.3 75.5 - - - +
83F ARG* 1.3 61.7 + - - +
85F LEU* 3.0 14.0 + - - +
86F ARG* 2.8 61.0 + - - +
5H TYR* 2.9 20.4 + - - -
7H ARG* 4.3 8.0 - - - +
8H VAL* 4.7 3.7 + - + +
20H LEU 5.7 0.6 - - - +
22H LEU* 3.8 23.6 - - + +
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Residues in contact with ARG 83 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13F LEU* 4.1 16.9 - - + +
21F LEU* 3.7 22.4 - - + +
22F PRO* 2.4 35.6 + - - +
23F ALA 3.5 1.4 + - - -
24F PHE* 3.3 30.9 - - - +
79F TYR* 3.1 45.7 + - - +
80F LEU* 3.2 7.5 + - - +
82F ASP* 1.3 74.3 + - - +
84F LEU* 1.3 66.5 + - - +
86F ARG* 3.1 9.1 + - - +
87F ILE* 2.8 30.8 + - - +
105F HIS 3.3 7.5 + - - -
110F GLU* 2.6 58.4 + - - +
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Residues in contact with LEU 84 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137E THR* 3.9 17.3 - - + -
140E TYR* 3.7 40.6 - - + +
141E LEU* 4.5 8.3 - - + -
80F LEU 3.2 14.8 + - - +
81F TYR* 3.7 17.9 - - + +
82F ASP 3.2 0.2 - - - -
83F ARG* 1.3 77.9 - - - +
85F LEU* 1.3 56.4 + - + +
87F ILE* 3.0 7.4 + - + +
88F ARG* 2.7 36.7 + - - +
110F GLU* 4.5 8.7 - - + -
113F TRP* 3.8 52.3 - - + +
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Residues in contact with LEU 85 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101E GLU 6.0 0.2 - - - +
133E PHE* 6.3 3.1 - - + -
81F TYR* 3.2 49.5 + - + +
82F ASP* 3.0 15.6 + - - +
84F LEU* 1.3 80.7 - - + +
86F ARG* 1.3 61.5 + - - +
88F ARG* 3.6 9.1 + - + +
89F ALA* 3.3 20.4 + - - +
4H ALA 5.1 0.2 - - - +
5H TYR* 3.7 15.6 - - + -
6H PHE* 3.3 49.5 + - + +
7H ARG* 3.9 12.6 - - - -
8H VAL* 3.9 10.1 - - + +
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Residues in contact with ARG 86 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13F LEU* 2.9 35.6 + - - +
14F HIS* 4.7 1.6 + - - +
16F ALA* 3.2 26.4 + - - +
18F GLU* 6.0 0.4 - - - +
19F GLY* 3.5 25.3 - - - +
20F GLN 2.7 35.7 + - - -
21F LEU* 4.3 15.9 - - + +
82F ASP* 2.8 31.9 + - - +
83F ARG* 3.1 8.7 + - - +
85F LEU* 1.3 76.5 - - - +
87F ILE* 1.3 63.6 + - - +
89F ALA* 3.2 12.2 - - - +
90F LEU* 3.0 21.3 - - + +
5H TYR* 3.2 43.9 + - + -
22H LEU* 4.6 4.6 - - - +
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Residues in contact with ILE 87 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21F LEU* 4.0 21.5 - - + -
83F ARG 2.8 21.6 + - - +
84F LEU* 3.4 9.4 - - + +
86F ARG* 1.3 74.7 - - - +
88F ARG* 1.3 68.0 + - - +
90F LEU* 2.8 32.1 + - + +
91F ARG 3.8 1.4 + - - -
106F MSE 3.7 28.3 - - + -
110F GLU* 3.6 45.1 - - + +
113F TRP* 4.6 7.6 - - + -
114F PHE* 3.8 25.5 - - + -
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Residues in contact with ARG 88 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98E MSE 4.1 3.8 - - - +
101E GLU* 2.7 43.1 + - - +
133E PHE* 5.0 2.0 - - + -
84F LEU 2.7 18.3 + - - +
85F LEU* 3.8 10.5 - - + +
87F ILE* 1.3 74.2 - - - +
89F ALA* 1.3 63.9 + - - +
91F ARG* 3.2 20.4 + - - +
92F TRP* 3.6 12.4 - - - +
113F TRP* 4.0 20.8 - - + -
114F PHE* 5.2 1.6 - - - -
117F TYR* 3.3 19.3 + - + +
1010F SO4 2.2 50.7 + - - -
4H ALA* 3.0 35.8 + - - +
6H PHE* 3.4 20.0 - - + -
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Residues in contact with ALA 89 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85F LEU 3.3 8.8 + - - +
86F ARG 3.2 12.9 + - - +
87F ILE 3.1 0.4 - - - -
88F ARG* 1.3 87.4 - - - +
90F LEU* 1.3 63.5 + - + +
92F TRP* 3.1 7.4 + - - +
93F GLU* 2.9 21.6 + - + +
3H GLU* 5.6 1.3 - - + -
4H ALA* 3.7 12.4 - - + +
5H TYR* 3.6 34.5 - - + +
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Residues in contact with LEU 90 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19F GLY 5.3 6.5 - - - +
21F LEU* 4.9 7.9 - - + -
86F ARG* 3.0 23.1 - - + +
87F ILE* 2.8 40.1 + - + +
89F ALA* 1.3 73.0 - - + +
91F ARG* 1.3 56.9 + - - +
93F GLU* 4.3 5.4 - - - +
94F TYR* 2.7 45.8 + - + +
95F GLY 4.1 0.6 - - - +
98F LEU* 4.2 23.6 - - + -
102F LEU* 3.6 40.2 - - + -
106F MSE 4.5 7.0 - - - -
114F PHE* 4.7 1.6 - - + -
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Residues in contact with ARG 91 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87F ILE 3.8 1.2 + - - -
88F ARG 3.2 13.5 + - - +
90F LEU* 1.3 76.6 - - - +
92F TRP* 1.3 63.1 + - + +
94F TYR 3.0 16.5 - - - +
95F GLY* 3.1 23.5 + - - +
96F SER* 3.6 33.7 + - - +
114F PHE* 3.8 24.3 - - + -
117F TYR* 4.0 11.7 - - + -
118F LYS* 3.9 23.2 + - - +
121F LEU* 3.9 27.0 - - + +
122F ALA* 5.7 1.4 - - - +
125F MSE 4.3 20.4 - - - +
137F THR* 4.1 21.7 + - - +
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Residues in contact with TRP 92 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94E ARG* 3.9 11.9 - - + -
97E LEU* 3.9 19.7 - - + -
88F ARG* 3.6 32.7 - - - -
89F ALA 3.1 5.3 + - - +
91F ARG* 1.3 79.8 - - + +
93F GLU* 1.3 68.8 + - - +
94F TYR 3.5 2.9 - - - +
117F TYR* 3.1 24.2 + - - -
121F LEU* 3.8 28.0 - - + -
136F ILE* 3.6 31.2 - - + -
137F THR* 3.6 21.8 - - + -
140F MSE 3.5 41.0 - - + +
1010F SO4 3.4 31.0 - - - +
4H ALA* 4.1 12.8 - - + -
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Residues in contact with GLU 93 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20B GLN* 4.5 11.9 + - - +
89F ALA* 2.9 14.4 + - + +
90F LEU* 3.8 7.1 - - - +
92F TRP* 1.3 82.3 - - - +
94F TYR* 1.3 101.9 + - + +
3H GLU* 6.6 0.2 - - - -
4H ALA* 5.2 3.2 - - + +
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Residues in contact with TYR 94 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17B PRO* 2.8 34.3 - - + +
18B GLU* 6.5 0.2 - - + -
20B GLN* 2.9 22.8 + - - -
90F LEU* 2.7 28.4 + - + +
91F ARG 3.0 12.1 - - - +
92F TRP 3.5 3.1 - - - +
93F GLU* 1.3 115.9 + - + +
95F GLY* 1.3 65.8 + - - +
97F ILE 4.6 2.7 - - - +
98F LEU* 4.9 2.9 - - + -
99F PRO* 3.3 39.5 - - + -
102F LEU* 3.9 16.7 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il