Contacts of the helix formed by residues 58 - 95 (chain J) in PDB entry 2EHO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 58 (chain J).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46J ASP* 3.5 45.5 - - + +
49J GLU* 3.7 18.8 - - + +
50J ALA* 5.1 0.4 - - + -
55J ARG* 3.5 22.2 - - - +
56J SER* 2.7 3.2 - - - -
57J ASP* 1.3 85.2 + - - +
59J ILE* 1.3 64.3 + - - +
60J PRO* 3.1 3.1 - - - -
61J THR* 2.8 19.7 + - - +
62J ILE* 2.9 23.4 + - + +
41L PRO* 3.8 29.4 - - + +
42L ARG* 3.9 21.1 - - - +
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Residues in contact with ILE 59 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50J ALA* 4.6 17.7 - - + -
56J SER* 3.0 23.9 + - - +
58J LEU* 1.3 74.4 - - - +
60J PRO* 1.3 66.1 - - + +
62J ILE* 2.9 17.1 + - + +
63J LYS* 2.8 54.6 + - + +
83L ILE* 5.8 0.7 - - + -
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Residues in contact with PRO 60 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56J SER 4.2 1.1 - - - +
57J ASP* 3.9 12.6 - - - +
58J LEU 3.5 3.4 - - - -
59J ILE* 1.3 94.3 - - + +
61J THR* 1.3 57.0 + - - +
63J LYS* 3.1 3.7 + - + +
64J PHE* 2.9 29.9 + - - +
38L THR* 4.3 13.2 - - + +
39L ALA 4.4 9.0 - - - +
40L MSE 4.2 23.1 - - + +
76L LEU* 4.6 2.6 - - - +
83L ILE* 3.9 36.3 - - + -
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Residues in contact with THR 61 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46J ASP* 4.2 4.0 - - - +
58J LEU* 2.8 15.0 + - - -
60J PRO* 1.3 75.2 - - - +
62J ILE* 1.3 57.3 + - - +
64J PHE* 3.5 4.6 - - - +
65J ARG* 3.1 57.6 + - - +
40L MSE 3.6 3.1 - - - +
41L PRO* 2.8 44.2 + - - +
42L ARG* 4.4 0.2 - - + -
43L LEU* 3.2 29.2 - - + +
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Residues in contact with ILE 62 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43J ASN* 3.4 31.8 + - - +
46J ASP* 4.0 22.9 - - + +
47J VAL* 3.9 40.4 - - + +
50J ALA* 4.4 7.2 - - + -
58J LEU* 2.9 26.3 + - + +
59J ILE* 2.9 18.4 + - + +
61J THR* 1.3 75.0 - - - +
63J LYS* 1.3 64.3 + - + +
65J ARG* 4.1 1.1 - - - +
66J HIS* 3.1 20.3 + - + +
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Residues in contact with LYS 63 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59J ILE* 2.8 37.8 + - + +
60J PRO* 3.5 7.0 - - + +
62J ILE* 1.3 71.2 - - + +
64J PHE* 1.3 69.8 + - - +
66J HIS* 3.1 15.7 + - - +
67J CYS* 3.1 17.6 + - - -
75L GLY 6.0 0.2 - - - +
76L LEU* 4.0 15.5 - - + -
83L ILE* 3.9 23.6 - - + +
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Residues in contact with PHE 64 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1J MSE 3.4 32.5 - - + -
2J PHE* 4.1 28.0 - + - -
60J PRO 2.9 12.4 + - - +
61J THR* 3.5 13.0 - - - +
63J LYS* 1.3 79.1 - - - +
65J ARG* 1.3 65.8 + - + +
67J CYS* 3.1 12.6 + - - +
68J SER* 3.2 18.6 + - - -
40L MSE 4.3 20.0 - - + -
43L LEU* 4.1 18.6 - - + -
46L PHE* 6.6 0.2 - - + -
47L PHE* 4.2 19.3 - + - -
68L LEU* 4.9 2.0 - - + -
71L TRP* 6.1 0.2 - + - -
72L LEU* 4.0 23.4 - - + +
76L LEU* 3.7 29.9 - - + +
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Residues in contact with ARG 65 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1J MSE 3.5 24.4 - - + +
39J LEU* 3.9 30.5 - - + +
42J GLN* 3.5 28.7 + - - +
43J ASN* 2.7 56.5 + - - +
46J ASP* 2.8 35.4 + - - +
61J THR* 3.1 32.6 + - + +
62J ILE* 4.1 2.4 - - - +
63J LYS 3.2 0.2 - - - -
64J PHE* 1.3 80.5 - - + +
66J HIS* 1.3 61.2 + - - +
68J SER* 3.1 6.4 + - - -
69J LEU* 3.0 23.9 + - + +
42L ARG* 4.4 10.3 - - - +
43L LEU* 5.7 2.7 - - + +
46L PHE* 6.3 1.0 - - - -
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Residues in contact with HIS 66 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153I LEU* 4.5 27.3 - - + +
43J ASN* 4.2 9.2 + - - +
62J ILE* 3.1 17.7 + - + +
63J LYS* 3.1 9.0 + - - +
65J ARG* 1.3 76.0 - - - +
67J CYS* 1.3 59.5 + - - +
69J LEU* 3.1 20.5 + - + +
70J LEU* 3.0 50.5 + - + +
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Residues in contact with CYS 67 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63J LYS* 3.1 20.4 + - - -
64J PHE 3.1 9.9 + - - +
66J HIS* 1.3 75.2 - - - +
68J SER* 1.3 61.4 + - - +
70J LEU* 3.4 12.3 + - - +
71J ARG* 2.9 28.8 + - - +
71L TRP* 3.6 21.0 - - + +
72L LEU* 3.9 7.0 - - + -
75L GLY* 4.0 32.8 - - - -
76L LEU* 4.6 5.8 - - - -
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Residues in contact with SER 68 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1J MSE 3.6 15.8 - - - +
2J PHE 4.8 5.2 + - - -
3J CYS* 3.4 18.9 - - - -
39J LEU* 3.9 19.5 - - - -
64J PHE* 3.2 18.9 + - - -
65J ARG 3.1 8.3 + - - -
67J CYS* 1.3 76.5 - - - +
69J LEU* 1.3 65.1 + - - +
72J ASN* 2.9 31.4 + - - -
71L TRP* 3.9 10.0 - - - -
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Residues in contact with LEU 69 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150I PRO* 4.6 0.9 - - + -
153I LEU* 3.8 25.8 - - + -
36J MSE 3.6 53.0 - - + +
39J LEU* 3.9 15.0 - - + +
40J TYR* 4.3 25.6 - - + +
43J ASN* 5.0 6.7 - - - +
65J ARG 3.0 13.0 + - - +
66J HIS* 3.2 28.9 - - + +
68J SER* 1.3 80.1 - - - +
70J LEU* 1.3 58.0 + - + +
72J ASN* 3.3 5.0 + - - +
73J ARG* 2.9 28.2 + - - +
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Residues in contact with LEU 70 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153I LEU* 4.6 19.3 - - + -
66J HIS* 3.0 41.6 + - + +
67J CYS* 3.8 11.2 - - - +
69J LEU* 1.3 72.7 - - - +
71J ARG* 1.3 60.7 + - - +
73J ARG* 3.3 22.1 + - - +
74J ARG* 2.9 30.5 + - - +
19L PHE* 5.6 0.2 - - - -
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Residues in contact with ARG 71 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3J CYS* 3.6 20.4 - - + +
7J MSE 3.7 19.6 - - - +
67J CYS 2.9 18.5 + - - +
69J LEU 3.3 0.2 - - - -
70J LEU* 1.3 74.3 - - - +
72J ASN* 1.3 58.4 + - - +
74J ARG* 3.2 24.7 + - - +
75J CYS* 2.9 48.8 + - - +
25L ILE* 3.1 43.2 + - - +
28L SER* 3.8 4.8 + - - -
29L HIS* 3.8 5.3 - - - +
71L TRP* 3.2 62.4 - - + +
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Residues in contact with ASN 72 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3J CYS* 3.5 27.0 - - - +
6J ALA* 3.5 19.0 + - - +
32J VAL* 3.9 12.4 - - + +
35J GLU* 3.5 23.0 + - - +
36J MSE 3.7 21.5 - - + +
39J LEU* 3.7 15.6 - - - +
68J SER 2.9 24.1 + - - +
69J LEU 3.5 3.8 - - - +
71J ARG* 1.3 78.1 - - - +
73J ARG* 1.3 60.4 + - - +
75J CYS* 3.4 0.7 + - - +
76J THR* 2.8 32.7 + - - +
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Residues in contact with ARG 73 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149I MSE 3.2 38.1 - - + -
152I ASN 4.7 2.4 + - - -
153I LEU* 4.2 25.9 - - + +
155I LYS 3.2 26.2 + - - -
156I VAL* 3.3 25.7 - - + +
157I ASP 4.9 1.8 - - - +
36J MSE 4.1 5.1 - - + -
69J LEU 2.9 15.6 + - - +
70J LEU* 3.6 20.7 - - - +
72J ASN* 1.3 79.7 - - - +
74J ARG* 1.3 58.2 + - - +
76J THR* 3.3 3.0 + - - -
77J VAL* 2.8 41.9 + - + +
19L PHE* 4.7 13.8 - - + -
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Residues in contact with ARG 74 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70J LEU 2.9 20.9 + - - +
71J ARG* 3.6 19.7 - - - +
73J ARG* 1.3 73.4 - - - +
75J CYS* 1.3 64.3 + - - +
77J VAL* 3.5 1.6 + - - +
78J ALA* 3.1 22.7 + - - +
17L GLU* 3.2 35.3 + - - +
18L ASN 3.2 23.6 + - - -
19L PHE* 2.9 58.3 + - + +
24L ASP* 3.8 9.3 - - - +
25L ILE* 3.0 26.3 - - + +
28L SER* 3.8 10.5 + - - -
71L TRP* 5.6 2.8 - - - +
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Residues in contact with CYS 75 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
6J ALA* 3.6 30.1 - - + -
7J MSE 4.5 5.4 - - - -
9J LEU* 5.4 0.7 - - + -
10J ILE* 3.1 24.5 - - + +
71J ARG* 2.9 46.8 + - - +
72J ASN 3.8 1.1 - - - +
74J ARG* 1.3 78.7 - - - +
76J THR* 1.3 58.0 + - - +
78J ALA* 3.2 4.3 + - - +
79J TYR 2.8 23.6 + - - -
25L ILE* 3.7 21.5 - - - -
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Residues in contact with THR 76 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145I ALA* 4.5 11.8 - - - +
146I LEU* 5.3 0.7 - - - +
149I MSE 4.9 5.5 - - - -
6J ALA* 5.0 0.4 - - + -
9J LEU* 4.5 9.6 - - + -
29J LEU* 4.0 23.8 - - + +
32J VAL* 3.4 28.7 - - + -
33J LEU* 6.1 2.0 - - + +
36J MSE 5.3 3.1 - - - -
72J ASN 2.8 19.9 + - - +
73J ARG* 3.5 7.1 + - - -
75J CYS* 1.3 74.4 - - + +
77J VAL* 1.3 65.9 + - - +
79J TYR* 3.6 7.5 - - - +
80J LEU* 2.8 36.5 + - - +
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Residues in contact with VAL 77 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141I LEU* 4.6 20.9 - - + +
146I LEU* 4.6 10.5 - - + -
149I MSE 5.6 0.2 - - - -
156I VAL* 4.4 27.4 - - + -
158I LEU* 5.6 2.2 - - + -
161I ALA* 5.6 0.4 - - + -
73J ARG* 2.8 39.4 + - + +
74J ARG* 3.9 4.9 - - - +
76J THR* 1.3 79.5 + - - +
78J ALA* 1.3 56.7 + - - +
80J LEU* 3.4 8.1 + - - +
81J TYR* 2.8 30.1 + - + +
19L PHE* 4.2 13.0 - - + -
20L LEU* 4.0 15.3 - - + -
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Residues in contact with ALA 78 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10J ILE* 4.7 2.0 - - + -
74J ARG 3.1 19.4 + - - +
75J CYS* 3.3 7.6 - - - +
77J VAL* 1.3 75.8 - - - +
79J TYR* 1.3 64.0 + - - +
81J TYR* 4.0 1.1 - - - +
82J ASP* 3.1 24.8 + - - +
19L PHE 4.6 1.8 - - - +
20L LEU* 3.7 37.1 - - + +
22L LEU* 3.8 12.9 - - + +
25L ILE* 4.6 10.5 - - + -
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Residues in contact with TYR 79 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9J LEU* 3.2 52.5 - - + -
10J ILE* 4.0 11.4 - - + +
12J GLU* 4.4 5.5 + - - -
13J LEU* 3.3 37.8 - - + +
23J ALA 4.4 1.2 + - - -
24J PHE* 3.9 9.0 - + - -
25J ASN* 2.8 40.6 + - - -
29J LEU* 5.5 4.3 - - + -
75J CYS 2.8 16.2 + - - +
76J THR* 3.6 4.5 - - - +
78J ALA* 1.3 76.7 - - - +
80J LEU* 1.3 80.9 + - + +
83J ARG* 3.2 55.5 + - - +
22L LEU* 5.3 0.4 - - - -
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Residues in contact with LEU 80 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140I TYR* 3.5 22.8 + - + +
141I LEU* 4.0 25.8 - - + +
144I VAL* 4.1 13.2 - - + -
145I ALA* 3.7 30.7 - - + -
146I LEU* 5.3 1.1 - - + -
24J PHE* 4.1 17.7 - - + -
29J LEU* 4.4 7.0 - - + -
76J THR* 2.8 29.9 + - - +
77J VAL* 3.7 5.6 - - - +
79J TYR* 1.3 92.2 - - + +
81J TYR* 1.3 63.2 + - - +
83J ARG* 3.5 6.5 + - - +
84J LEU* 3.3 26.4 + - - +
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Residues in contact with TYR 81 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101I GLU 4.0 9.0 + - - -
102I LYS* 4.7 4.0 + - - -
104I PHE* 3.7 33.5 - + - -
133I PHE* 5.7 1.6 - + - -
137I THR* 4.6 17.7 - - + -
141I LEU* 5.1 9.6 - - + +
158I LEU* 6.0 2.7 - - + -
162I VAL* 4.1 19.4 - - + +
163I PRO* 6.0 0.4 - - + -
77J VAL* 2.8 23.0 + - + +
78J ALA 4.2 2.7 - - - +
80J LEU* 1.3 72.4 - - - +
82J ASP* 1.3 65.3 + - - +
84J LEU* 3.4 12.2 + - + +
85J LEU* 3.1 60.2 + - + +
88J ARG* 4.3 1.7 + - - -
6L PHE* 5.9 0.3 - - - -
8L VAL* 3.9 15.0 - - + -
20L LEU* 3.5 32.1 - - + -
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Residues in contact with ASP 82 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13J LEU* 3.3 15.3 - - + +
78J ALA 3.1 18.4 + - - +
79J TYR 3.8 4.5 - - - +
80J LEU 3.2 0.2 - - - -
81J TYR* 1.3 75.6 - - - +
83J ARG* 1.3 65.0 + - - +
85J LEU* 3.2 11.7 + - - +
86J ARG* 2.6 55.7 + - - +
5L TYR* 2.5 26.3 + - - -
7L ARG* 4.0 10.6 - - - +
8L VAL 4.9 0.9 + - - -
22L LEU* 3.8 18.3 - - + +
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Residues in contact with ARG 83 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13J LEU* 4.3 15.7 - - + +
21J LEU* 3.5 26.7 - - + +
22J PRO* 2.2 38.2 + - - +
23J ALA 3.3 2.2 + - - -
24J PHE* 3.0 27.4 - - - +
79J TYR* 3.2 49.3 + - - +
80J LEU* 3.9 5.6 - - - +
81J TYR 3.3 0.2 - - - -
82J ASP* 1.3 74.3 - - - +
84J LEU* 1.3 61.5 + - - +
86J ARG* 3.1 9.7 + - - +
87J ILE* 2.6 35.1 + - - +
105J HIS 3.7 4.9 + - - -
110J GLU* 2.8 56.0 + - - +
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Residues in contact with LEU 84 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137I THR* 3.7 23.6 - - + -
140I TYR* 3.9 35.2 - - + +
141I LEU* 5.5 0.9 - - + -
80J LEU 3.3 13.3 + - - +
81J TYR* 3.7 15.7 - - + +
82J ASP 3.2 0.6 - - - -
83J ARG* 1.3 80.0 - - - +
85J LEU* 1.3 55.4 + - + +
87J ILE* 3.6 16.0 - - + +
88J ARG* 2.7 39.2 + - - +
110J GLU* 4.8 0.4 - - + +
113J TRP* 3.7 53.5 - - + +
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Residues in contact with LEU 85 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81J TYR* 3.1 48.7 + - + +
82J ASP* 3.3 19.3 - - - +
84J LEU* 1.3 77.8 - - + +
86J ARG* 1.3 59.5 + - - +
88J ARG* 3.1 41.7 + - - +
89J ALA* 3.3 16.3 + - - +
4L ALA 5.4 0.2 - - - +
5L TYR* 3.7 21.9 - - + -
6L PHE* 3.6 30.4 + - + +
7L ARG* 4.4 1.6 - - - -
8L VAL* 4.1 13.7 - - + -
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Residues in contact with ARG 86 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13J LEU* 3.0 36.9 + - - +
16J ALA* 4.1 14.2 + - - +
19J GLY* 3.4 37.2 - - - +
20J GLN 2.8 35.8 + - - +
21J LEU* 4.2 21.3 - - + +
22J PRO* 5.0 1.1 - - - -
82J ASP* 2.6 41.9 + - - +
83J ARG* 3.1 7.4 + - - +
85J LEU* 1.3 74.0 - - - +
87J ILE* 1.3 65.4 + - - +
88J ARG 3.1 1.1 - - - -
89J ALA* 2.9 21.8 + - - +
90J LEU* 3.3 13.3 + - + +
5L TYR* 3.3 29.4 + - + -
7L ARG* 5.4 2.8 - - - +
22L LEU* 4.6 2.2 - - - +
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Residues in contact with ILE 87 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21J LEU* 3.8 22.9 - - + -
83J ARG* 2.6 25.5 + - + +
84J LEU* 3.6 9.9 - - + +
86J ARG* 1.3 72.4 - - - +
88J ARG* 1.3 59.9 + - - +
90J LEU* 2.9 35.4 - - + +
91J ARG 3.9 1.7 + - - -
106J MSE 4.5 11.7 - - + -
110J GLU* 3.6 48.9 - - + +
113J TRP* 4.1 16.4 - - + -
114J PHE* 3.7 29.9 - - + -
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Residues in contact with ARG 88 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98I MSE 4.5 6.8 + - - +
101I GLU* 2.6 65.0 + - - +
133I PHE* 3.5 17.2 - - - -
81J TYR* 4.3 3.6 + - - -
84J LEU 2.7 20.7 + - - +
85J LEU* 3.1 35.3 - - - +
87J ILE* 1.3 75.5 - - - +
89J ALA* 1.3 61.0 + - - +
90J LEU 3.4 0.2 + - - -
91J ARG* 3.5 8.3 + - - +
92J TRP* 3.5 16.5 + - - +
113J TRP* 4.2 16.0 - - + -
117J TYR* 3.7 24.5 - - + +
6L PHE* 2.7 39.8 - - - -
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Residues in contact with ALA 89 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98I MSE 5.9 1.1 - - - -
85J LEU 3.3 10.5 + - - +
86J ARG 2.9 13.1 + - - +
88J ARG* 1.3 78.3 - - - +
90J LEU* 1.3 67.5 + - + +
92J TRP* 3.0 19.0 + - - +
93J GLU* 3.3 13.4 + - + +
3L GLU* 3.3 27.4 - - + +
4L ALA* 4.4 11.0 - - - +
5L TYR* 3.9 17.0 - - + +
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Residues in contact with LEU 90 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19J GLY 6.1 1.1 - - - +
21J LEU* 4.3 15.3 - - + -
86J ARG* 3.3 11.1 + - + +
87J ILE* 2.9 28.0 + - + +
89J ALA* 1.3 80.6 - - + +
91J ARG* 1.3 61.6 + - - +
93J GLU* 3.1 1.5 + - + -
94J TYR* 2.8 47.3 + - + +
98J LEU* 4.3 9.6 - - + -
102J LEU* 3.4 39.3 - - + -
106J MSE 4.2 18.4 - - + -
114J PHE* 4.2 7.0 - - + -
3L GLU* 6.0 0.9 - - - +
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Residues in contact with ARG 91 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88J ARG 3.5 4.6 + - - +
89J ALA 3.2 1.0 + - - -
90J LEU* 1.3 79.1 - - - +
92J TRP* 1.3 62.6 + - + +
95J GLY* 3.1 41.2 + - - -
96J SER* 3.2 21.6 + - - +
114J PHE* 3.8 12.5 - - + -
117J TYR* 3.7 23.1 - - + -
118J LYS* 3.6 31.9 + - - +
121J LEU* 3.7 27.9 - - + +
122J ALA* 6.3 0.2 - - - +
125J MSE 3.9 23.4 - - - +
135J ASP* 5.3 0.8 + - - -
137J THR* 4.1 21.2 + - - +
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Residues in contact with TRP 92 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94I ARG* 3.8 27.4 - - + -
97I LEU* 4.3 10.5 - - + -
98I MSE 3.8 36.2 - - + +
101I GLU* 4.9 0.4 - - - -
88J ARG* 3.5 17.4 + - - +
89J ALA* 3.0 7.9 + - - +
91J ARG* 1.3 77.7 - - + +
93J GLU* 1.3 59.8 + - - +
94J TYR 3.6 0.2 - - - -
95J GLY 4.8 0.7 - - - -
117J TYR* 3.1 26.5 + - - -
121J LEU* 3.6 29.8 - - + -
136J ILE* 3.8 24.7 - - + -
137J THR* 3.7 25.1 - - + -
140J MSE 3.6 50.4 - - + +
4L ALA* 5.4 4.3 - - + -
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Residues in contact with GLU 93 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89J ALA 3.3 12.2 + - - +
90J LEU* 3.1 2.5 + - + -
92J TRP* 1.3 79.0 - - - +
94J TYR* 1.3 93.5 + - + +
3L GLU* 4.3 27.2 - - + +
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Residues in contact with TYR 94 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90J LEU* 2.8 40.2 + - + +
93J GLU* 1.3 109.0 - - + +
95J GLY* 1.3 62.2 + - - +
97J ILE 4.3 8.6 + - - +
98J LEU* 4.7 4.9 - - + -
99J PRO* 3.4 42.0 - - + -
102J LEU* 4.3 11.4 - - + +
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Residues in contact with GLY 95 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91J ARG* 3.1 39.7 + - - +
92J TRP 4.8 0.8 - - - -
94J TYR* 1.3 79.5 - - - +
96J SER* 1.3 63.9 + - - -
97J ILE 3.3 3.7 + - - -
98J LEU* 3.8 14.4 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il