Contacts of the helix formed by residues 33 - 63 (chain C) in PDB entry 2FBW
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 33 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
220B ASN* 4.4 3.6 + - - -
223B ARG* 3.5 42.8 + - - -
31C LYS 5.2 0.7 - - - -
32C TRP* 1.3 78.3 - - - +
34C LEU* 1.3 64.5 + - - +
35C PRO* 3.5 5.2 - - - +
36C MET* 3.3 25.2 + - - +
37C ALA* 3.0 24.7 + - - +
120C GLU* 5.2 0.2 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 34 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C SER* 1.3 72.3 - - - +
35C PRO* 1.3 67.5 - - + +
37C ALA* 3.2 8.8 + - + -
38C MET* 2.8 57.1 + - + +
120C GLU* 4.1 12.7 + - - +
123C GLY* 4.9 0.4 - - - -
124C VAL* 3.9 29.4 - - + +
127C LEU* 4.3 20.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 35 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218B ILE 4.4 13.5 - - - +
219B MET* 5.3 2.7 - - + +
220B ASN* 6.0 0.4 - - - +
223B ARG* 3.4 30.1 - - - +
33C SER* 3.5 4.0 - - - +
34C LEU* 1.3 95.4 - - + +
36C MET* 1.3 57.2 + - - +
38C MET* 3.3 6.1 + - + +
39C SER* 2.9 29.6 + - - -
104C ARG* 4.7 9.8 + - - +
108C TRP* 6.1 0.7 - - + -
119C VAL* 3.8 33.0 - - + +
120C GLU* 3.5 13.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 36 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169B PRO* 4.7 11.4 - - + -
172B TRP* 5.8 4.5 - - - -
218B ILE* 4.6 13.2 + - + -
220B ASN* 3.3 36.3 + - - +
30C TYR* 4.3 8.3 - - + +
31C LYS 3.2 27.4 - - - +
32C TRP* 3.5 40.2 - - + -
33C SER* 3.3 15.7 + - - +
35C PRO* 1.3 78.3 - - - +
37C ALA* 1.3 62.5 + - - +
39C SER* 3.3 7.5 + - - -
40C ILE* 3.2 27.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 37 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32C TRP* 4.1 20.6 - - + -
33C SER 3.0 18.0 + - - +
34C LEU* 3.7 11.2 - - + +
36C MET* 1.3 77.3 - - - +
38C MET* 1.3 60.4 + - + +
40C ILE* 3.4 5.8 + - - +
41C THR* 2.8 29.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 38 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C LEU* 2.8 44.1 + - + +
35C PRO* 3.9 4.0 - - - +
37C ALA* 1.3 71.1 - - + +
39C SER* 1.3 59.9 + - - +
41C THR* 4.3 2.2 - - - -
42C HIS* 2.9 28.4 + - - +
97C TYR* 2.9 36.4 + - + +
101C ASN* 3.9 3.2 + - - +
104C ARG* 3.9 20.4 - - - +
123C GLY* 3.3 45.3 - - - +
126C VAL* 3.8 21.5 - - + -
127C LEU* 4.0 12.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 39 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B HIS 5.3 1.8 + - - -
217B THR 5.4 0.9 - - - -
218B ILE* 3.4 37.2 - - - +
35C PRO 2.9 17.4 + - - -
36C MET* 3.5 9.3 + - - +
37C ALA 3.2 0.2 - - - -
38C MET* 1.3 77.6 - - - +
40C ILE* 1.3 65.2 + - - +
42C HIS* 3.3 8.9 + - - +
43C ARG* 3.3 19.8 + - - +
101C ASN* 5.3 1.1 - - - +
104C ARG* 5.7 0.2 - - - +
105C HIS* 5.5 7.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 40 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32C TRP* 3.2 41.1 - - + -
36C MET* 3.2 11.6 + - + +
37C ALA* 3.8 8.1 - - - +
39C SER* 1.3 80.9 - - - +
41C THR* 1.3 61.2 - - - +
43C ARG* 3.3 8.8 + - - +
44C GLY* 2.8 24.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 41 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C ALA* 2.8 20.2 + - - +
38C MET* 3.7 5.1 - - - -
39C SER 3.2 0.2 - - - -
40C ILE* 1.3 78.4 - - - +
42C HIS* 1.3 59.8 + - - +
44C GLY* 4.2 2.5 - - - +
45C THR* 2.9 37.2 + - + -
93C PHE* 6.4 2.0 - - + -
97C TYR* 3.8 27.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 42 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C MET 2.9 10.5 + - - +
39C SER* 3.3 7.8 + - - +
41C THR* 1.3 76.4 - - - +
43C ARG* 1.3 59.7 + - - +
45C THR* 3.0 17.6 + - - -
46C GLY 3.0 11.1 + - - -
97C TYR* 3.7 4.0 - - - -
98C HIS* 3.2 61.6 + + - -
101C ASN* 3.1 35.7 + - - +
102C GLY* 3.7 17.6 - - - -
105C HIS* 4.0 21.0 - + - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 43 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216B HIS* 3.9 18.6 + - - +
39C SER 3.3 8.5 + - - +
40C ILE* 3.3 11.8 + - - +
42C HIS* 1.3 79.5 - - - +
44C GLY* 1.3 66.3 + - - +
46C GLY* 3.3 1.7 + - - -
47C VAL* 3.0 28.2 + - + +
53D GLN* 4.3 6.3 - - - +
54D VAL* 3.7 37.2 - - + +
57D ASP* 2.8 32.9 + - - +
58D TYR* 3.0 43.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 44 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C ILE 2.8 19.4 + - - -
41C THR* 3.4 3.8 + - - -
42C HIS 3.4 0.2 - - - -
43C ARG* 1.3 75.2 - - - +
45C THR* 1.3 58.2 + - - +
47C VAL* 3.5 4.8 + - - +
48C ALA* 3.0 27.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 45 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C THR* 2.9 31.3 + - + +
42C HIS* 3.0 14.2 + - - -
44C GLY* 1.3 70.1 - - - +
46C GLY* 1.3 59.3 + - - +
48C ALA* 3.1 6.6 + - - +
49C LEU* 2.8 37.0 + - - +
93C PHE* 6.2 1.6 - - + -
94C PRO* 3.7 38.8 - - + +
97C TYR* 3.9 15.3 - - + -
98C HIS* 3.3 14.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 46 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C HIS 3.0 11.0 + - - -
43C ARG* 3.3 3.5 + - - -
45C THR* 1.3 78.0 + - - +
47C VAL* 1.3 61.3 + - - +
49C LEU* 3.3 5.1 + - - +
50C SER* 3.0 26.8 + - - -
98C HIS* 3.5 26.2 + - - -
51D LEU* 5.6 0.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 47 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C ARG* 3.0 21.2 + - + +
44C GLY* 4.0 4.7 - - - +
46C GLY* 1.3 75.7 - - - +
48C ALA* 1.3 64.0 + - - +
50C SER* 3.2 1.4 + - - +
51C LEU* 3.0 44.9 + - + +
51D LEU* 3.9 29.6 - - + -
54D VAL* 4.3 22.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 48 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C GLY 3.0 18.7 + - - +
45C THR* 3.6 7.9 - - - +
47C VAL* 1.3 78.6 - - - +
49C LEU* 1.3 57.0 + - - +
51C LEU* 3.8 7.3 - - - +
52C GLY* 2.9 25.1 + - - -
94C PRO* 5.3 9.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 49 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45C THR 2.8 23.7 + - - +
46C GLY* 3.7 5.2 - - - +
48C ALA* 1.3 73.4 - - + +
50C SER* 1.3 58.0 + - - +
52C GLY* 3.2 3.1 + - - -
53C VAL* 2.9 34.1 + - + +
91C LEU 5.5 1.1 - - - +
94C PRO* 4.2 11.7 - - + +
95C LEU* 3.9 47.1 - - + +
98C HIS* 3.8 37.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 50 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C GLY 3.0 17.6 + - - -
47C VAL 3.2 4.0 + - - -
49C LEU* 1.3 77.8 - - - +
51C LEU* 1.3 59.5 + - - +
53C VAL* 3.1 8.2 + - - +
54C SER* 2.8 33.0 + - - -
47D GLY* 3.6 26.7 + - - -
51D LEU* 4.1 27.5 - - - +
75D LEU* 6.4 0.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 51 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C VAL* 3.0 39.2 + - + +
48C ALA* 4.0 6.3 - - - +
50C SER* 1.3 77.5 - - - +
52C GLY* 1.3 56.5 + - - +
54C SER* 3.9 5.0 - - - -
55C LEU* 3.0 41.8 + - + +
51D LEU* 5.5 5.2 - - + -
75D LEU* 4.9 17.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 52 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48C ALA 2.9 16.0 + - - -
49C LEU* 3.2 4.5 + - - -
51C LEU* 1.3 74.3 - - - +
53C VAL* 1.3 64.5 + - - +
55C LEU* 3.3 8.0 + - - +
56C PHE* 3.0 24.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 53 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C LEU* 2.9 19.2 + - + +
50C SER* 3.1 9.2 + - - +
52C GLY* 1.3 73.7 - - - +
54C SER* 1.3 59.9 + - - +
56C PHE* 3.7 7.4 - - - +
57C SER* 2.9 27.5 + - - -
43D LEU* 4.5 32.5 - - + +
44D THR* 5.7 0.4 - - - +
79D THR* 3.7 20.6 - - + -
83D LEU* 3.9 22.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 54 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C SER* 2.8 19.0 + - - -
51C LEU* 4.0 8.1 - - - -
53C VAL* 1.3 77.3 - - - +
55C LEU* 1.3 57.3 + - - +
57C SER* 3.4 2.1 + - - -
58C LEU* 2.8 30.0 + - - +
75D LEU* 3.4 31.2 - - - +
78D ILE* 6.1 0.3 - - - +
79D THR* 2.7 31.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 55 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C LEU* 3.0 28.6 + - + +
52C GLY* 3.7 7.2 - - - +
54C SER* 1.3 76.4 - - - +
56C PHE* 1.3 52.1 + - - +
58C LEU* 3.1 19.1 + - + +
59C ALA* 2.7 36.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 56 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C GLY 3.0 17.2 + - - +
53C VAL* 3.7 5.2 - - - +
55C LEU* 1.3 77.2 - - - +
57C SER* 1.3 65.2 + - - +
59C ALA* 3.1 10.1 + - + +
60C ALA* 2.9 23.1 + - + +
67C PHE* 4.2 25.1 - + - -
83D LEU* 3.9 22.4 - - + -
86D PHE* 3.6 51.6 - + + -
93D ILE* 5.2 4.9 - - + -
96D ALA* 4.8 4.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 57 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C VAL 2.9 18.1 + - - -
54C SER 3.6 4.7 - - - -
56C PHE* 1.3 82.3 - - - +
58C LEU* 1.3 62.6 + - - +
60C ALA* 3.4 5.0 + - - +
61C LEU* 3.4 23.6 + - - +
78D ILE* 3.3 9.4 + - - +
79D THR* 2.8 35.6 + - - -
82D GLY* 3.1 17.4 - - - -
83D LEU* 4.1 11.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 58 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C SER 2.8 18.5 + - - +
55C LEU* 3.1 20.2 + - + +
57C SER* 1.3 74.8 + - - +
59C ALA* 1.3 66.0 + - - +
61C LEU* 3.1 10.6 + - + +
62C LEU* 3.1 48.8 + - + +
78D ILE* 4.4 21.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 59 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C LEU 2.7 19.4 + - - +
56C PHE* 3.6 10.1 - - + +
58C LEU* 1.3 73.3 - - - +
60C ALA* 1.3 57.2 + - - +
62C LEU* 4.6 2.5 - - - +
63C LEU* 2.8 58.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 60 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56C PHE* 2.9 18.3 + - + +
57C SER* 3.7 7.6 - - - +
58C LEU 3.2 0.2 - - - -
59C ALA* 1.3 77.6 - - - +
61C LEU* 1.3 60.9 + - - +
63C LEU 4.3 6.9 - - - +
82D GLY 4.5 5.6 - - - +
85D TYR* 3.4 20.4 + - + -
86D PHE* 4.0 38.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 61 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C SER 3.4 16.4 - - - +
58C LEU* 3.1 11.5 + - + +
60C ALA* 1.3 78.7 - - - +
62C LEU* 1.3 68.9 + - + +
63C LEU 4.6 1.6 - - - +
78D ILE* 4.1 24.0 - - + +
81D THR* 4.5 11.7 - - + +
82D GLY* 3.8 22.7 - - - +
85D TYR* 3.8 40.1 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 62 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C LEU* 3.1 45.0 + - + +
59C ALA* 5.0 2.0 - - - -
61C LEU* 1.3 86.1 - - + +
63C LEU* 1.3 69.8 + - + +
64C PRO* 3.6 4.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 63 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C ALA* 2.8 42.3 + - + +
60C ALA* 4.3 8.1 - - - +
61C LEU 4.6 1.6 - - - +
62C LEU* 1.3 79.2 - - + +
64C PRO* 1.3 76.0 - - + +
65C GLU 3.6 5.6 + - - +
70C TYR* 3.6 37.7 - - + +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il