Contacts of the helix formed by residues 586 - 614 (chain B) in PDB entry 2G47
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 586 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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581A PRO* 5.3 0.9 - - + -
582A PHE* 3.4 24.4 - - + -
718A GLN* 4.7 0.9 - - - +
722A ARG* 5.9 2.4 - - - -
762A GLN* 3.3 21.9 + - - +
584B TYR 4.1 0.7 - - - -
585B VAL* 1.3 83.8 - - + +
587B PRO* 1.3 75.2 - - + +
588B LEU* 3.1 12.3 + - - +
589B HIS* 2.8 37.8 + - - -
590B CYS* 3.1 19.4 + - - +
695B TRP* 3.7 10.7 + - - -
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Residues in contact with PRO 587 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
759A LEU* 3.7 19.5 - - + -
762A GLN* 4.3 9.2 - - - +
586B ASP* 1.3 89.4 - - + +
588B LEU* 1.3 55.3 + - - +
590B CYS* 3.2 3.3 + - + +
591B ASN* 2.9 35.4 + - - -
695B TRP* 3.6 38.8 - - + -
699B GLU* 3.8 25.1 - - + +
700B LEU* 3.8 16.2 - - + +
703B ALA* 4.0 7.2 - - + -
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Residues in contact with LEU 588 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
718A GLN* 5.4 8.7 - - - +
722A ARG* 6.4 2.9 - - - -
586B ASP* 3.1 13.9 + - - +
587B PRO* 1.3 78.1 - - - +
589B HIS* 1.3 67.1 + - + +
591B ASN* 3.2 6.2 + - - +
592B MET* 2.9 50.4 + - + +
703B ALA* 3.6 25.1 - - + +
706B ASP* 3.9 22.4 - - + +
707B VAL* 3.5 30.7 - - + -
711B ARG* 5.2 11.2 - - + +
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Residues in contact with HIS 589 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582A PHE* 3.3 18.9 - + - -
718A GLN* 3.8 15.3 + - - -
582B PHE* 3.2 37.1 + + - +
583B ALA 3.6 1.9 - - - +
585B VAL* 3.4 20.5 - - + +
586B ASP* 2.8 38.7 + - - +
588B LEU* 1.3 76.2 - - + +
590B CYS* 1.3 61.6 + - - +
592B MET* 3.8 22.2 - - + +
593B ALA* 2.8 31.0 + - - +
715B PHE* 3.5 26.3 - + + -
718B GLN* 5.6 2.2 - - + -
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Residues in contact with CYS 590 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B ALA 3.2 15.6 + - - +
584B TYR* 3.8 31.6 - - + -
586B ASP 3.1 12.3 + - - +
587B PRO* 3.2 9.4 + - + +
589B HIS* 1.3 75.1 - - - +
591B ASN* 1.3 64.3 + - - +
593B ALA* 3.2 3.2 + - - +
594B TYR* 3.0 23.1 + - - +
622B ASN* 4.0 12.0 - - - +
666B TYR* 5.2 3.1 - - - -
695B TRP* 4.4 0.7 - - + -
700B LEU* 4.3 25.4 - - + -
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Residues in contact with ASN 591 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587B PRO 2.9 18.6 + - - -
588B LEU* 3.3 8.0 - - - +
590B CYS* 1.3 76.9 - - - +
592B MET* 1.3 55.1 + - - +
594B TYR* 3.3 2.3 + - - +
595B LEU* 2.6 37.2 + - - +
666B TYR* 2.6 42.3 + - + -
700B LEU* 2.7 39.2 + - - +
703B ALA* 3.6 7.7 - - - +
704B LEU* 3.3 19.5 - - + +
707B VAL* 4.1 12.6 - - + -
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Residues in contact with MET 592 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
718A GLN* 6.2 0.4 - - - +
588B LEU* 2.9 34.2 + - + +
589B HIS* 3.8 29.6 - - + +
590B CYS 3.2 0.2 - - - -
591B ASN* 1.3 74.6 - - - +
593B ALA* 1.3 59.8 + - - +
595B LEU* 3.9 6.0 - - - +
596B TYR* 2.8 33.4 + - - +
707B VAL* 4.1 21.8 - - + -
711B ARG* 3.9 27.8 - - + +
712B LEU* 3.9 9.2 - - + +
715B PHE* 3.6 49.5 - - + -
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Residues in contact with ALA 593 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B ALA* 3.9 22.4 - - + +
589B HIS 2.8 20.3 + - - +
590B CYS 3.5 4.9 - - - +
592B MET* 1.3 71.9 - - - +
594B TYR* 1.3 61.3 + - - +
596B TYR* 3.6 4.4 - - - +
597B LEU* 3.3 27.5 + - + +
622B ASN* 3.8 21.3 - - + +
626B GLY 5.3 0.2 - - - +
627B MET* 6.1 0.9 - - + -
715B PHE* 3.6 18.5 - - + -
719B LEU* 5.2 4.0 - - + -
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Residues in contact with TYR 594 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590B CYS* 3.0 13.0 + - - +
591B ASN 3.5 7.2 - - - +
593B ALA* 1.3 80.8 - - - +
595B LEU* 1.3 69.4 + - + +
597B LEU* 3.4 1.7 + - - +
598B GLU* 2.9 62.3 + - + +
622B ASN* 3.4 29.5 - - - +
662B ILE* 5.6 0.7 - - + -
666B TYR* 3.3 57.1 - + + +
669B SER* 5.4 3.8 + - - -
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Residues in contact with LEU 595 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591B ASN 2.6 34.8 + - - +
592B MET* 3.9 5.8 - - - +
594B TYR* 1.3 79.8 - - + +
596B TYR* 1.3 54.1 + - - +
598B GLU* 3.5 2.8 - - - +
599B LEU* 2.8 44.9 + - + +
659B PHE* 5.1 6.5 - - + +
662B ILE* 3.8 29.2 - - + +
663B LYS* 4.0 20.6 - - + +
666B TYR* 3.4 34.3 - - + -
704B LEU* 4.3 10.1 - - + -
707B VAL* 5.1 8.7 - - + -
712B LEU* 4.5 13.7 - - + -
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Residues in contact with TYR 596 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
592B MET 2.8 23.3 + - - +
593B ALA 3.6 4.0 - - - +
595B LEU* 1.3 73.6 - - - +
597B LEU* 1.3 82.4 + - + +
599B LEU* 3.6 7.0 - - - +
600B LEU* 2.9 29.0 + - + +
627B MET* 4.3 6.1 - - - -
649B MET* 2.7 42.1 + - + +
652B PHE* 3.9 17.7 - + + -
712B LEU* 4.2 14.5 - - + +
715B PHE* 4.4 4.7 - + + -
716B ILE* 3.5 39.5 - - + -
719B LEU* 4.0 28.0 - - + -
720B LEU* 3.6 12.0 - - + +
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Residues in contact with LEU 597 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593B ALA* 3.3 9.1 + - - +
594B TYR* 4.0 2.5 - - - +
596B TYR* 1.3 109.8 - - + +
598B GLU* 1.3 61.1 + - - +
600B LEU* 3.5 13.4 - - + +
601B LYS* 3.0 38.4 + - - +
620B LEU* 3.8 26.2 - - + +
621B GLN* 3.4 11.9 - - - +
622B ASN* 3.3 40.8 - - + +
627B MET* 3.9 23.6 - - + -
649B MET* 5.6 0.4 - - + -
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Residues in contact with GLU 598 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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594B TYR* 2.9 57.2 + - + +
595B LEU* 3.2 7.2 + - - +
597B LEU* 1.3 77.4 - - - +
599B LEU* 1.3 57.5 + - - +
601B LYS* 3.5 29.3 + - - +
602B ASP* 3.1 27.9 + - - +
662B ILE* 4.1 23.5 - - + +
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Residues in contact with LEU 599 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595B LEU* 2.8 26.7 + - + +
596B TYR* 3.6 4.7 - - - +
598B GLU* 1.3 70.4 - - - +
600B LEU* 1.3 66.0 + - - +
602B ASP* 3.4 3.7 + - - +
603B SER* 3.0 18.5 + - - -
652B PHE* 3.4 22.3 - - + -
654B ILE* 3.8 19.7 - - + -
655B ASP 5.4 1.1 - - - +
658B ARG* 3.8 9.6 - - + -
659B PHE* 3.7 35.4 - - + +
662B ILE* 3.6 27.4 - - + -
712B LEU* 3.6 30.1 - - + -
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Residues in contact with LEU 600 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596B TYR* 2.9 20.7 + - + +
597B LEU* 3.5 12.8 - - + +
598B GLU 3.3 0.2 - - - -
599B LEU* 1.3 77.4 - - - +
601B LYS* 1.3 61.7 + - - +
603B SER* 3.1 5.5 + - - -
604B LEU* 3.0 29.8 + - + +
620B LEU* 3.4 24.0 - - + -
645B ILE* 4.8 1.6 - - + +
648B LYS* 3.4 47.6 - - + +
649B MET* 3.2 32.8 - - + +
652B PHE* 3.7 20.8 - - + -
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Residues in contact with LYS 601 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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597B LEU* 3.0 23.3 + - - +
598B GLU* 3.5 33.1 + - - +
600B LEU* 1.3 73.2 - - - +
602B ASP* 1.3 61.8 + - - +
604B LEU 3.2 1.0 + - - -
605B ASN* 2.8 32.7 + - - +
618B TYR* 3.5 32.0 + - + +
619B ASP* 5.3 2.6 + - - -
620B LEU* 2.8 45.1 + - + +
621B GLN* 4.8 6.3 - - - +
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Residues in contact with ASP 602 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351B LYS* 2.8 31.5 + - - +
357B ASN* 5.3 0.5 - - - +
598B GLU 3.1 18.8 + - - +
599B LEU* 3.6 5.6 - - - +
600B LEU 3.2 0.2 - - - -
601B LYS* 1.3 79.7 - - - +
603B SER* 1.3 63.4 + - - +
605B ASN* 3.6 16.1 - - - +
606B GLU 4.9 0.3 + - - -
658B ARG* 2.8 48.4 + - - +
662B ILE* 3.8 14.0 - - + +
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Residues in contact with SER 603 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
599B LEU 3.0 14.0 + - - -
600B LEU* 3.1 9.2 + - - -
602B ASP* 1.3 80.9 - - - +
604B LEU* 1.3 61.7 + - - +
605B ASN 3.3 0.6 + - - -
606B GLU* 4.6 6.4 + - - +
607B TYR* 5.3 1.0 + - - +
648B LYS* 3.1 33.1 + - - -
652B PHE* 3.4 16.6 - - - -
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Residues in contact with LEU 604 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600B LEU* 3.0 28.3 + - + +
601B LYS 4.0 2.7 - - - +
603B SER* 1.3 76.5 + - - +
605B ASN* 1.3 59.2 + - - +
606B GLU 3.4 0.7 - - - -
607B TYR* 3.2 15.1 + - + +
608B ALA* 2.8 31.6 + - + +
618B TYR* 4.0 20.2 - - + +
620B LEU* 5.9 0.2 - - + -
641B LEU* 6.1 1.3 - - + -
644B LYS* 3.9 36.1 - - + -
645B ILE* 4.2 31.4 - - + -
648B LYS* 4.0 31.0 - - + +
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Residues in contact with ASN 605 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341B GLU* 2.7 36.8 + - - +
347B LEU* 4.5 6.1 - - - +
351B LYS* 4.4 12.7 + - - +
601B LYS 2.8 16.7 + - - +
602B ASP* 3.6 12.6 - - - +
603B SER 3.3 1.8 - - - -
604B LEU* 1.3 75.7 - - - +
606B GLU* 1.3 65.0 + - - +
608B ALA* 3.8 4.6 - - - +
609B TYR* 3.0 27.0 + - - +
612B GLU* 5.7 3.2 + - - -
618B TYR* 5.9 0.2 - - - -
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Residues in contact with GLU 606 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341B GLU 3.4 23.3 - - - +
342B GLY* 3.5 13.7 - - - -
343B PRO* 3.5 40.4 - - + +
344B GLY 4.8 0.2 + - - -
348B SER* 2.5 28.6 + - - +
602B ASP 4.9 0.6 + - - -
603B SER 4.6 5.7 + - - +
604B LEU 3.4 0.6 - - - -
605B ASN* 1.3 79.0 - - - +
607B TYR* 1.3 61.9 + - - +
609B TYR* 3.8 6.1 + - - +
610B ALA* 4.5 2.9 + - - +
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Residues in contact with TYR 607 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343B PRO* 5.9 1.1 - - - -
530B PHE* 3.2 47.6 - + - -
603B SER 5.3 1.1 + - - +
604B LEU* 3.2 17.7 + - + +
606B GLU* 1.3 81.6 - - - +
608B ALA* 1.3 67.7 + - - +
609B TYR 3.4 0.7 + - - -
610B ALA* 3.7 10.2 + - - +
640B ILE* 3.7 17.5 + - - +
641B LEU* 4.1 11.7 - - + -
644B LYS* 3.4 56.6 - - + +
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Residues in contact with ALA 608 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604B LEU* 2.8 23.3 + - + +
605B ASN* 4.1 5.2 - - - +
607B TYR* 1.3 78.3 - - + +
609B TYR* 1.3 64.9 + - - +
610B ALA 3.3 0.4 - - - -
611B ALA* 3.1 10.7 + - + +
612B GLU* 2.9 25.1 + - - +
616B LEU 4.8 0.3 - - - +
618B TYR* 4.0 29.4 - - + -
641B LEU* 4.6 10.3 - - + -
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Residues in contact with TYR 609 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
336B HIS* 5.0 4.0 + + - -
339B GLY 3.7 3.4 + - - -
340B HIS* 3.8 25.3 - + - -
341B GLU* 3.5 52.0 - - + -
342B GLY* 4.5 0.7 - - - +
605B ASN* 3.0 19.7 + - - +
606B GLU 3.9 7.4 - - - +
607B TYR 3.3 0.6 - - - -
608B ALA* 1.3 77.2 - - - +
610B ALA* 1.3 62.3 + - - +
612B GLU* 3.1 24.0 + - - +
613B LEU* 3.0 57.8 + - + +
1D ASP* 3.5 38.2 - - + +
2D ALA* 3.8 8.7 + - - +
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Residues in contact with ALA 610 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
340B HIS* 5.7 4.9 - - + -
528B ASN* 2.9 46.8 + - - +
529B GLU 5.5 0.7 - - - +
530B PHE* 4.1 8.1 - - + -
606B GLU 4.5 2.6 + - - +
607B TYR 3.7 10.6 + - - +
608B ALA 3.3 0.4 - - - -
609B TYR* 1.3 80.1 - - - +
611B ALA* 1.3 63.3 + - - +
613B LEU* 3.4 7.0 + - - -
614B ALA* 3.1 11.4 + - - +
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Residues in contact with ALA 611 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530B PHE* 3.7 43.3 - - + -
608B ALA* 3.1 13.5 + - - +
610B ALA* 1.3 74.9 - - - +
612B GLU* 1.3 65.2 + - - +
614B ALA* 3.0 9.0 + - - +
615B GLY 3.3 0.5 + - - -
616B LEU* 2.8 39.8 + - + +
641B LEU* 4.2 12.6 - - + -
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Residues in contact with GLU 612 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
605B ASN* 5.7 2.9 + - - -
608B ALA* 2.9 14.2 + - - +
609B TYR* 3.3 31.4 - - + +
611B ALA* 1.3 76.7 - - - +
613B LEU* 1.3 65.1 + - + +
615B GLY* 3.0 14.4 + - - -
616B LEU 3.3 11.9 + - - +
617B SER* 4.7 15.6 - - - -
1D ASP* 5.4 5.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 613 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
336B HIS* 3.7 29.8 - - + +
340B HIS* 3.9 10.3 - - + +
417B LEU* 3.7 21.0 - - + +
528B ASN* 3.9 12.8 - - - +
609B TYR* 3.0 59.6 + - + +
610B ALA* 3.6 9.0 - - - +
611B ALA 3.3 0.2 - - - -
612B GLU* 1.3 80.0 - - + +
614B ALA* 1.3 57.4 + - - +
615B GLY 3.1 4.6 + - - -
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Residues in contact with ALA 614 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
417B LEU* 4.3 10.8 - - - -
528B ASN* 4.1 4.5 - - - +
530B PHE* 3.3 35.6 - - + +
531B ILE* 3.8 9.2 - - + +
532B PRO* 3.7 5.7 - - + +
610B ALA 3.1 16.0 + - - +
611B ALA 3.0 7.6 + - - +
613B LEU* 1.3 76.5 - - - +
615B GLY* 1.3 61.1 + - - +
616B LEU* 3.5 3.4 + - + +
634B TYR* 3.2 20.6 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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