Contacts of the helix formed by residues 780 - 818 (chain D) in PDB entry 2HHW
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 780 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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778D SER* 3.0 10.5 + - - +
779D ARG* 1.3 76.9 - - - +
781D PHE* 1.3 66.4 + - - +
782D ASN* 3.0 14.0 + - - +
783D VAL* 2.7 41.9 + - + +
784D ARG* 2.9 25.5 + - - +
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Residues in contact with PHE 781 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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779D ARG 3.4 6.3 + - - -
780D ASN* 1.3 71.2 + - - +
782D ASN* 1.3 66.4 + - + +
784D ARG* 3.4 27.8 - - - +
785D SER* 2.8 52.8 + - - -
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Residues in contact with ASN 782 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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780D ASN* 3.0 10.5 + - - +
781D PHE* 1.3 87.6 - - + +
783D VAL* 1.3 63.8 + - + +
785D SER* 3.5 4.7 + - - -
786D PHE* 3.0 56.6 + - - -
2F T 4.8 10.6 + - - -
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Residues in contact with VAL 783 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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775D ASP* 3.4 35.8 - - + +
778D SER* 3.9 15.5 - - - +
780D ASN* 2.7 32.4 + - + +
782D ASN* 1.3 73.2 - - + +
784D ARG* 1.3 64.8 + - - +
786D PHE* 3.5 8.8 + - - +
787D ALA* 3.3 19.1 + - - +
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Residues in contact with ARG 784 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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758D LYS* 3.8 10.8 - - - +
775D ASP 3.4 9.6 - - - +
776D ILE 3.2 27.1 - - - +
777D THR* 4.9 1.3 - - - +
778D SER* 2.8 37.8 + - - +
779D ARG* 3.6 9.1 + - - +
780D ASN 2.9 7.9 + - - +
781D PHE* 3.4 48.8 - - - +
783D VAL* 1.3 76.0 - - - +
785D SER* 1.3 59.0 + - - +
787D ALA* 3.0 4.2 + - - +
788D GLU* 2.9 46.9 + - + +
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Residues in contact with SER 785 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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781D PHE* 2.8 51.2 + - - -
782D ASN* 3.7 8.5 - - - -
784D ARG* 1.3 77.6 + - - +
786D PHE* 1.3 63.0 + - - +
788D GLU* 3.2 16.9 + - - +
789D ARG* 3.1 46.2 + - - +
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Residues in contact with PHE 786 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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782D ASN* 3.0 50.7 + - - -
783D VAL* 3.7 9.6 - - - +
784D ARG 3.2 0.2 - - - -
785D SER* 1.3 77.8 - - - +
787D ALA* 1.3 62.7 + - - +
789D ARG* 3.4 28.6 + - - +
790D MET* 3.2 39.2 + - + +
2F T 4.9 11.4 - - - -
4F C 3.5 21.5 + - - -
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Residues in contact with ALA 787 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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773D LEU* 3.8 13.0 - - + +
775D ASP* 3.6 17.3 - - + +
776D ILE* 3.4 35.6 - - + +
783D VAL 3.3 2.3 + - - +
784D ARG 3.0 8.6 + - - +
786D PHE* 1.3 76.2 - - - +
788D GLU* 1.3 60.9 + - - +
790D MET* 3.2 14.6 + - - +
791D ALA* 3.0 26.3 + - - +
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Residues in contact with GLU 788 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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754D VAL* 3.8 24.4 - - + +
758D LYS* 3.2 22.0 + - - -
776D ILE* 4.1 10.8 - - + -
784D ARG* 2.9 34.2 + - + +
785D SER* 3.2 17.8 + - - +
787D ALA* 1.3 78.5 - - - +
789D ARG* 1.3 62.9 + - + +
791D ALA* 3.1 11.2 + - - +
792D MET* 3.0 31.4 + - + +
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Residues in contact with ARG 789 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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714D TYR 4.0 11.0 - - - +
715D GLY* 4.0 14.8 + - - -
785D SER* 3.1 36.0 + - - +
786D PHE* 3.4 47.9 + - - +
788D GLU* 1.3 72.9 - - + +
790D MET* 1.3 61.3 + - - +
792D MET* 3.2 18.7 + - + +
793D ASN* 3.0 29.8 + - - +
2F T 4.6 24.3 + - - -
3F 6OG 3.1 24.8 + - - -
4F C 2.9 31.8 + - - +
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Residues in contact with MET 790 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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771D ARG* 3.4 33.0 - - - +
773D LEU* 3.9 22.9 - - + -
786D PHE* 3.2 28.8 + - + +
787D ALA* 3.5 12.1 - - - +
788D GLU 3.2 0.2 - - - -
789D ARG* 1.3 73.9 - - - +
791D ALA* 1.3 62.0 + - - +
793D ASN* 4.5 0.7 - - - +
794D THR* 2.8 37.3 + - - +
4F C 4.3 9.6 - - - +
5F G 3.6 25.6 - - - +
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Residues in contact with ALA 791 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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753D ILE* 3.5 13.8 - - - +
754D VAL* 4.2 11.9 - - + -
757D ALA* 4.1 3.4 - - + -
763D VAL* 4.0 12.6 - - + -
773D LEU* 3.7 18.8 - - + +
776D ILE* 3.9 15.5 - - + -
787D ALA 3.0 12.6 + - - +
788D GLU* 3.1 13.2 + - - +
790D MET* 1.3 77.7 - - - +
792D MET* 1.3 53.1 + - - +
795D PRO* 3.0 25.9 - - - +
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Residues in contact with MET 792 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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713D VAL 4.9 1.6 - - - +
714D TYR* 4.0 22.1 - - + -
715D GLY* 4.5 8.3 - - - -
749D TYR* 4.6 1.9 - - - -
750D MET* 3.4 66.5 - - + +
753D ILE* 4.1 2.5 - - + -
754D VAL* 4.2 12.3 - - + -
788D GLU* 3.0 19.6 + - + +
789D ARG* 3.5 17.0 - - + +
790D MET 3.1 0.2 - - - -
791D ALA* 1.3 80.3 - - - +
793D ASN* 1.3 60.1 + - - +
795D PRO* 4.0 1.7 - - - +
796D ILE* 3.6 19.4 - - - +
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Residues in contact with ASN 793 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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658D GLU* 4.4 0.4 + - - -
714D TYR* 3.3 47.4 + - + -
789D ARG 3.0 15.9 + - - +
790D MET* 4.3 1.3 - - - +
792D MET* 1.3 77.1 - - - +
794D THR* 1.3 70.5 + - - +
795D PRO 3.4 0.4 - - - -
796D ILE* 3.0 4.5 + - - +
797D GLN* 2.9 45.9 + - - +
4F C 3.6 43.0 + - - +
5F G 4.2 4.2 - - - +
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Residues in contact with THR 794 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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612D GLN 4.5 2.9 - - - +
613D THR* 3.8 19.2 - - + +
763D VAL* 4.0 16.4 - - + +
764D THR 6.1 0.4 - - - -
765D THR* 4.1 7.5 - - + +
770D ARG 5.8 1.1 - - - -
771D ARG* 2.9 51.9 + - + +
790D MET* 2.8 23.7 + - - -
793D ASN* 1.3 77.5 + - - +
795D PRO* 1.3 60.2 - - + +
798D GLY* 2.7 29.8 + - - -
4F C 5.6 0.2 + - - -
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Residues in contact with PRO 795 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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665D ILE* 3.9 5.9 - - + +
749D TYR* 3.6 21.5 - - - +
753D ILE* 4.2 7.2 - - + -
763D VAL* 3.9 17.7 - - + -
764D THR 3.4 25.8 - - - +
765D THR* 4.3 3.6 - - + -
791D ALA 3.0 28.7 - - - +
792D MET 4.0 2.7 - - - +
793D ASN 3.5 3.4 - - - -
794D THR* 1.3 91.4 - - + +
796D ILE* 1.3 58.2 + - + +
799D SER* 2.6 33.8 + - - -
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Residues in contact with ILE 796 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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658D GLU* 3.3 28.9 - - + +
661D VAL* 4.0 10.6 - - + +
662D LEU* 3.9 30.7 - - + +
665D ILE* 3.8 23.3 - - + -
714D TYR* 3.1 28.7 - - + +
749D TYR* 4.0 16.2 - - + +
792D MET 3.6 19.5 - - - +
793D ASN 3.0 3.5 + - - +
795D PRO* 1.3 76.1 - - - +
797D GLN* 1.3 67.8 + - - +
798D GLY 3.1 1.1 - - - -
799D SER* 3.2 2.6 + - - -
800D ALA* 3.0 22.7 + - - +
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Residues in contact with GLN 797 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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613D THR* 2.7 28.1 + - + +
615D ARG* 3.4 28.3 + - - +
658D GLU* 3.6 24.8 + - - +
793D ASN* 2.9 32.3 + - - +
794D THR 4.4 0.7 - - - +
796D ILE* 1.3 73.8 - - - +
798D GLY* 1.3 57.5 + - - +
800D ALA* 3.3 4.5 + - - +
801D ALA* 3.0 25.1 + - - +
29E DDG 3.3 20.2 + - - -
4F C 3.3 7.5 + - - -
5F G 3.0 33.7 + - - +
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Residues in contact with GLY 798 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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613D THR* 3.2 27.4 + - - +
765D THR* 3.6 12.3 - - - +
794D THR 2.7 23.4 + - - -
797D GLN* 1.3 73.0 - - - +
799D SER* 1.3 57.8 + - - +
801D ALA* 3.1 4.7 + - - +
802D ASP* 2.9 30.7 + - - +
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Residues in contact with SER 799 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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661D VAL* 3.8 20.0 - - - -
665D ILE* 3.7 3.8 - - - +
765D THR* 3.5 1.8 - - - +
766D LEU* 2.9 42.1 + - - +
795D PRO 2.6 25.0 + - - -
796D ILE 3.2 0.2 + - - -
798D GLY* 1.3 74.6 - - - +
800D ALA* 1.3 62.9 + - - +
802D ASP* 3.2 12.4 + - - +
803D ILE* 3.0 30.2 + - - +
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Residues in contact with ALA 800 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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654D TYR* 6.1 0.3 - - - -
657D ILE* 4.0 20.8 - - + +
658D GLU* 3.7 24.7 - - + +
661D VAL* 4.4 10.9 - - + +
796D ILE 3.0 13.0 + - - +
797D GLN 3.4 9.4 - - - +
799D SER* 1.3 79.6 - - - +
801D ALA* 1.3 60.6 + - - +
803D ILE* 3.5 5.8 + - - +
804D ILE* 3.2 23.6 + - - +
829D HIS 4.7 4.1 - - - +
830D ASP* 6.1 1.5 - - + +
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Residues in contact with ALA 801 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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614D GLY* 3.6 32.3 - - - +
615D ARG* 4.0 15.0 - - + +
797D GLN 3.0 13.4 + - - +
798D GLY* 3.1 10.7 + - - +
800D ALA* 1.3 74.3 - - - +
802D ASP* 1.3 64.9 + - - +
804D ILE* 3.4 9.5 - - - +
805D LYS* 3.1 31.7 + - - +
829D HIS 5.2 2.7 - - - -
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Residues in contact with ASP 802 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473D LEU* 4.6 0.2 - - - +
477D LEU* 4.4 1.4 - - - +
765D THR* 2.5 32.5 + - - -
766D LEU* 5.5 1.1 - - + -
767D LEU* 3.1 44.5 + - + +
769D ARG* 2.8 44.0 + - - +
798D GLY 2.9 12.4 + - - +
799D SER* 3.2 10.0 + - - +
801D ALA* 1.3 77.6 - - - +
803D ILE* 1.3 58.8 + - + +
805D LYS* 3.3 5.7 + - - +
806D LYS* 3.0 28.2 + - - +
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Residues in contact with ILE 803 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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654D TYR* 3.8 21.8 - - + +
657D ILE* 5.0 6.3 - - + -
661D VAL* 3.9 25.6 - - + -
766D LEU* 4.6 11.9 - - + -
767D LEU* 6.4 0.2 - - + -
799D SER 3.0 18.2 + - - +
800D ALA* 3.7 5.8 - - - +
801D ALA 3.2 0.2 - - - -
802D ASP* 1.3 75.4 - - + +
804D ILE* 1.3 67.0 + - - +
806D LYS* 3.2 4.4 + - - +
807D ALA* 3.0 20.4 + - - +
855D ALA* 4.0 6.6 - - + +
856D VAL* 3.9 37.9 - - + -
858D LEU* 4.3 10.1 - - + -
862D LEU* 4.1 17.7 - - + -
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Residues in contact with ILE 804 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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654D TYR* 4.2 16.1 - - + -
800D ALA 3.2 9.4 + - - +
801D ALA* 3.4 13.9 - - - +
803D ILE* 1.3 79.7 - - - +
805D LYS* 1.3 65.7 + - + +
807D ALA* 3.3 6.1 + - + +
808D MET* 3.0 22.2 + - - +
827D GLN* 3.7 22.0 - - + +
829D HIS 3.4 17.9 - - - +
830D ASP* 3.4 13.7 - - - +
831D GLU 3.4 39.9 - - - +
832D LEU* 3.7 23.6 - - + -
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Residues in contact with LYS 805 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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399D TYR* 5.0 0.6 - - - -
477D LEU* 4.0 14.8 - - + -
478D GLU* 2.8 31.2 + - - +
481D LEU* 3.5 33.4 - - + +
608D GLN* 4.8 6.7 + - - +
614D GLY 2.8 28.4 + - - +
615D ARG 5.0 0.2 + - - -
616D LEU* 4.1 19.2 - - + +
769D ARG* 3.4 18.8 - - - +
801D ALA* 3.1 20.8 + - - +
802D ASP 3.5 5.2 - - - +
804D ILE* 1.3 81.9 - - + +
806D LYS* 1.3 62.0 + - - +
808D MET* 3.3 18.9 + - - +
809D ILE* 3.3 17.5 + - - +
827D GLN* 5.3 4.7 - - - +
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Residues in contact with LYS 806 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477D LEU* 3.7 16.9 - - + +
767D LEU* 4.9 11.9 - - + -
802D ASP 3.0 13.7 + - - +
803D ILE* 3.2 8.5 + - - +
805D LYS* 1.3 75.3 - - - +
807D ALA* 1.3 58.3 + - - +
809D ILE* 3.2 7.3 + - + +
810D ASP* 2.8 57.4 + - - +
854D GLN 4.9 1.4 + - - -
855D ALA* 2.7 33.0 + - + +
856D VAL* 4.4 8.3 - - + -
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Residues in contact with ALA 807 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
654D TYR* 3.4 25.6 - - + +
803D ILE 3.0 9.0 + - - +
804D ILE* 3.5 10.8 - - - +
806D LYS* 1.3 78.0 - - - +
808D MET* 1.3 52.6 + - - +
810D ASP* 3.4 5.3 + - - +
811D LEU* 2.7 37.0 + - - +
832D LEU* 4.7 5.1 - - + +
851D VAL* 3.8 3.4 - - - +
852D MET* 4.1 17.7 - - + +
855D ALA* 3.9 13.4 - - + +
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Residues in contact with MET 808 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481D LEU* 3.8 28.5 - - + -
484D ILE* 3.7 6.7 - - + +
485D LEU* 4.1 8.3 - - + -
488D MET* 3.6 38.4 - - + -
616D LEU* 5.2 2.5 - - - -
804D ILE 3.0 19.7 + - - +
805D LYS* 3.6 11.4 - - - +
806D LYS 3.2 0.2 - - - -
807D ALA* 1.3 76.3 - - - +
809D ILE* 1.3 56.7 + - - +
811D LEU* 3.7 5.5 - - - +
812D ASN* 3.0 30.7 + - - +
824D LEU* 4.2 13.4 - - + +
827D GLN* 3.7 29.8 - - + -
832D LEU* 3.5 22.2 - - + -
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Residues in contact with ILE 809 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476D GLU 3.6 18.8 - - - +
477D LEU* 3.3 45.3 - - + +
480D PRO* 4.0 13.9 - - + -
481D LEU* 4.2 8.7 - - + +
484D ILE* 3.6 21.3 - - + -
805D LYS 3.5 7.2 - - - +
806D LYS* 3.2 9.7 + - + +
808D MET* 1.3 73.8 - - - +
810D ASP* 1.3 71.6 + - - +
812D ASN* 3.3 3.5 + - - +
813D ALA* 3.1 23.4 + - + +
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Residues in contact with ASP 810 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806D LYS* 2.8 52.9 + - - +
807D ALA 3.7 1.6 - - - +
809D ILE* 1.3 80.5 - - - +
811D LEU* 1.3 62.8 + - - +
813D ALA* 3.4 7.3 + - - +
814D ARG* 3.0 26.6 + - + +
851D VAL* 3.6 18.9 - - + +
854D GLN 5.0 0.7 - - - +
855D ALA* 3.8 14.4 - - - -
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Residues in contact with LEU 811 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
807D ALA 2.7 22.4 + - - +
808D MET 3.7 3.6 - - - +
809D ILE 3.2 0.2 - - - -
810D ASP* 1.3 71.1 - - - +
812D ASN* 1.3 60.5 + - - +
814D ARG* 3.2 2.3 + - - +
815D LEU* 2.9 49.7 + - + +
824D LEU* 3.9 30.7 - - + -
832D LEU* 4.0 15.5 - - + -
834D LEU* 4.0 16.8 - - + -
847D LEU* 3.5 31.4 - - + -
848D VAL* 4.2 20.4 - - + +
851D VAL* 3.4 12.7 - - + +
852D MET* 5.7 1.3 - - + -
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Residues in contact with ASN 812 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484D ILE* 3.8 32.9 - - + +
487D GLU* 3.8 20.2 + - - +
808D MET 3.0 18.4 + - - +
809D ILE 3.6 4.7 - - - +
811D LEU* 1.3 76.8 - - - +
813D ALA* 1.3 63.6 + - - +
815D LEU* 3.4 11.9 + - - +
816D LYS* 3.1 36.2 + - - +
824D LEU* 4.7 8.4 + - + +
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Residues in contact with ALA 813 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809D ILE* 3.1 13.8 + - + +
810D ASP* 3.6 10.8 - - - +
811D LEU 3.2 0.2 - - - -
812D ASN* 1.3 79.1 - - - +
814D ARG* 1.3 57.1 + - + +
816D LYS* 3.4 8.3 + - - +
817D GLU* 3.0 29.3 + - - +
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Residues in contact with ARG 814 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
810D ASP* 3.0 20.2 + - + +
811D LEU 3.2 4.2 + - - +
813D ALA* 1.3 75.6 - - + +
815D LEU* 1.3 65.7 + - - +
817D GLU* 3.4 15.1 + - - +
818D GLU* 3.0 58.9 + - - +
847D LEU* 3.9 28.7 + - + +
850D GLU* 5.1 11.1 - - - +
851D VAL* 3.8 29.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 815 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811D LEU* 2.9 46.1 + - + +
812D ASN* 3.8 10.8 - - - +
814D ARG* 1.3 75.2 - - - +
816D LYS* 1.3 60.2 + - - +
818D GLU 3.5 0.7 + - - -
819D ARG 3.2 2.8 + - - -
820D LEU* 3.0 58.3 + - + +
822D ALA* 3.6 28.7 - - + +
823D HIS* 4.3 5.4 - - - -
824D LEU* 4.8 4.0 - - + +
834D LEU* 4.0 14.8 - - + -
844D LEU* 4.0 19.3 - - + -
847D LEU* 4.2 5.6 - - + -
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Residues in contact with LYS 816 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
812D ASN* 3.1 27.9 + - - +
813D ALA* 3.6 8.3 - - - +
815D LEU* 1.3 75.7 - - - +
817D GLU* 1.3 62.2 + - - +
819D ARG* 2.9 24.6 + - - +
820D LEU 5.7 0.7 - - - -
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Residues in contact with GLU 817 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
813D ALA 3.0 17.8 + - - +
814D ARG* 3.9 17.7 + - - +
816D LYS* 1.3 78.8 - - - +
818D GLU* 1.3 59.9 + - + +
819D ARG* 3.2 24.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 818 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814D ARG* 3.0 48.9 + - - +
815D LEU 4.0 0.2 - - - +
817D GLU* 1.3 77.2 - - + +
819D ARG* 1.3 77.2 + - - +
820D LEU* 3.2 23.6 + - + +
843D ARG* 3.2 33.8 + - - -
847D LEU* 3.9 15.3 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il