Contacts of the helix formed by residues 677 - 707 (chain C) in PDB entry 2HYE
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 677 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
626C ARG* 3.8 35.7 - - - +
675C LYS 3.5 8.6 + - - +
676C GLU* 1.3 77.9 - - - +
678C VAL* 1.3 63.9 + - - +
679C GLU* 2.7 28.4 + - + +
680C GLU* 3.2 21.5 + - + +
681C GLN* 3.0 19.5 + - - +
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Residues in contact with VAL 678 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
677C THR* 1.3 70.9 + - - +
679C GLU* 1.3 66.5 + - + +
681C GLN* 3.2 9.5 + - + +
682C VAL* 2.8 42.2 + - + +
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Residues in contact with GLU 679 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
622C SER* 4.6 16.1 - - - -
626C ARG* 4.0 18.9 + - - -
677C THR* 2.7 15.0 + - + +
678C VAL* 1.3 74.5 - - + +
680C GLU* 1.3 64.6 + - - +
682C VAL* 3.1 6.3 + - - +
683C SER* 2.9 26.8 + - - -
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Residues in contact with GLU 680 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455C LYS* 3.5 15.7 + - + -
459C LYS* 3.3 32.5 + - - -
675C LYS 3.6 2.5 - - - +
676C GLU* 2.9 34.4 - - + +
677C THR* 3.2 26.2 + - + +
679C GLU* 1.3 77.5 - - - +
681C GLN* 1.3 51.7 + - - +
683C SER* 3.3 6.3 + - - -
684C THR* 2.7 41.6 + - - +
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Residues in contact with GLN 681 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404C LYS* 3.5 10.9 + - - +
407C GLU* 2.9 34.4 - - - +
411C LYS* 5.3 0.9 - - - +
452C PHE* 4.2 5.7 - - + -
676C GLU* 3.4 27.5 - - - +
677C THR 3.0 12.2 + - - +
678C VAL* 3.2 14.8 - - + +
679C GLU 3.1 0.2 - - - -
680C GLU* 1.3 74.7 - - - +
682C VAL* 1.3 68.1 + - - +
684C THR* 2.8 20.6 - - - +
685C THR* 2.5 32.5 + - - +
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Residues in contact with VAL 682 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
678C VAL* 2.8 33.6 + - + +
679C GLU* 3.7 5.2 - - - +
681C GLN* 1.3 83.6 - - - +
683C SER* 1.3 64.3 + - - +
685C THR* 2.9 16.9 + - - -
686C GLU* 3.0 15.4 + - + +
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Residues in contact with SER 683 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
679C GLU 2.9 18.0 + - - -
680C GLU* 3.5 6.5 + - - -
682C VAL* 1.3 77.4 - - - +
684C THR* 1.3 60.2 + - - +
685C THR 2.9 5.5 + - - -
686C GLU* 3.2 15.6 + - - +
687C ARG* 3.3 29.5 + - - +
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Residues in contact with THR 684 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451C ALA* 4.3 9.2 - - - +
452C PHE* 3.7 27.2 - - + -
455C LYS* 3.8 32.0 - - + +
676C GLU* 5.2 0.2 - - - +
680C GLU* 2.7 32.9 + - - +
681C GLN* 2.8 22.9 - - - +
683C SER* 1.3 73.7 + - - +
685C THR* 1.3 54.8 + - - +
687C ARG* 4.5 5.8 - - - -
688C VAL* 3.6 16.7 - - - +
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Residues in contact with THR 685 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403C ASN* 5.8 2.9 - - + -
407C GLU* 5.7 1.6 - - - +
448C VAL* 5.5 5.2 - - + -
452C PHE* 3.5 20.5 - - + -
681C GLN* 2.5 32.4 + - - +
682C VAL* 3.3 8.2 + - - -
683C SER 2.9 0.6 - - - -
684C THR* 1.3 77.3 - - - +
686C GLU* 1.3 67.1 + - - +
687C ARG 3.2 1.3 - - - -
688C VAL* 3.4 10.9 + - + +
689C PHE* 3.3 51.0 + - + -
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Residues in contact with GLU 686 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
682C VAL* 3.0 12.7 + - + +
683C SER* 3.8 11.0 - - - +
685C THR* 1.3 74.3 - - - +
687C ARG* 1.3 57.5 + - - +
688C VAL 2.7 16.8 + - - -
689C PHE* 3.1 11.6 + - - +
690C GLN* 2.8 48.3 + - + +
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Residues in contact with ARG 687 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535C THR* 3.8 40.8 + - - +
683C SER* 3.3 24.7 + - - +
684C THR* 5.0 4.7 - - - -
685C THR 3.2 0.8 - - - -
686C GLU* 1.3 82.4 - - - +
688C VAL* 1.3 66.5 + - + +
690C GLN* 3.8 11.4 - - - +
691C ASP* 3.4 25.0 - - - +
106D TYR 5.3 7.0 - - - +
107D GLY* 5.5 8.2 - - - -
108D HIS* 4.1 13.9 + - - +
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Residues in contact with VAL 688 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447C ASP* 3.2 42.0 - - + +
448C VAL* 4.3 9.2 - - + -
451C ALA* 3.9 16.2 - - + -
452C PHE* 5.6 1.3 - - + -
684C THR 3.6 23.1 - - - +
685C THR* 3.5 10.8 - - + +
686C GLU 2.7 2.8 + - - -
687C ARG* 1.3 82.2 - - + +
689C PHE* 1.3 68.0 + - + +
690C GLN 3.3 0.7 - - - -
691C ASP* 3.3 11.8 - - + +
692C ARG* 3.0 34.6 + - + +
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Residues in contact with PHE 689 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403C ASN* 3.4 30.5 - - + -
448C VAL* 5.2 4.3 - - + -
685C THR* 3.3 40.3 + - + +
686C GLU* 3.1 13.5 + - - +
688C VAL* 1.3 78.8 - - + +
690C GLN* 1.3 56.7 + - - +
691C ASP 3.1 6.0 + - - -
692C ARG* 3.4 45.8 + - - +
693C GLN* 3.8 22.3 + - - +
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Residues in contact with GLN 690 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
686C GLU* 2.8 36.3 + - + +
687C ARG* 3.8 10.8 - - - +
689C PHE* 1.3 74.5 - - - +
691C ASP* 1.3 67.8 + - - +
693C GLN* 4.9 10.1 - - - +
694C TYR* 2.9 38.9 + - + -
66D GLU 5.7 1.8 + - - -
67D GLU* 6.1 0.4 - - - +
69D THR* 5.5 3.0 - - - +
106D TYR* 5.6 0.2 - - - +
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Residues in contact with ASP 691 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
687C ARG* 3.4 18.4 - - - +
688C VAL* 3.3 22.6 - - + +
689C PHE 3.1 0.8 + - - -
690C GLN* 1.3 79.7 - - - +
692C ARG* 1.3 69.1 + - - +
693C GLN* 3.1 5.3 - - - +
694C TYR* 3.3 15.8 + - - +
695C GLN* 3.1 31.2 + - - +
106D TYR* 4.1 33.6 + - - +
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Residues in contact with ARG 692 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
403C ASN* 3.1 24.9 + - - +
445C GLY* 4.4 5.3 - - - -
447C ASP* 3.5 33.1 + - + +
448C VAL* 3.8 5.9 - - - +
688C VAL* 3.0 21.4 + - + +
689C PHE* 3.4 35.7 - - - +
691C ASP* 1.3 79.1 - - - +
693C GLN* 1.3 73.1 + - - +
695C GLN* 3.1 2.9 + - - +
696C ILE* 2.8 30.7 + - + +
725C PHE* 3.3 49.1 - - + +
726C PRO* 4.5 10.7 - - - +
728C LYS* 6.0 4.2 - - - +
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Residues in contact with GLN 693 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
689C PHE 3.8 18.2 + - - +
690C GLN* 4.9 10.3 - - - +
691C ASP 4.7 3.8 - - - +
692C ARG* 1.3 87.1 - - - +
694C TYR* 1.3 71.2 + - + +
696C ILE* 3.4 9.1 + - - +
697C ASP* 3.1 26.7 + - - +
731C ASP* 4.4 28.0 + - - +
734C LYS* 5.3 0.7 - - - +
735C ARG* 2.7 42.7 + - - +
67D GLU* 5.2 1.3 - - + -
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Residues in contact with TYR 694 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
690C GLN* 2.9 34.0 + - + -
691C ASP* 3.3 14.7 + - - +
692C ARG 3.2 0.2 - - - -
693C GLN* 1.3 78.1 - - + +
695C GLN* 1.3 60.8 + - - +
696C ILE 3.0 2.4 + - - -
697C ASP* 3.2 5.1 + - - -
698C ALA* 2.6 38.0 + - - +
66D GLU 5.2 0.7 + - - -
67D GLU* 3.4 46.5 - - + -
68D CYS 4.9 0.2 + - - -
69D THR* 3.2 32.9 + - + +
81D PHE* 4.0 15.9 - + + -
106D TYR* 3.3 54.7 - + + -
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Residues in contact with GLN 695 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490C LYS* 5.9 2.8 - - - +
691C ASP* 3.1 24.3 + - - +
692C ARG* 3.1 8.0 + - - +
694C TYR* 1.3 76.4 - - - +
696C ILE* 1.3 57.3 + - - +
698C ALA* 4.6 3.0 - - - +
699C ALA* 2.9 28.9 + - - +
702C ARG* 4.8 8.8 + - - -
723C LEU* 3.4 9.0 - - + +
725C PHE* 4.1 19.5 - - + -
103D PHE* 5.5 1.4 - - - +
106D TYR* 3.2 29.2 + - + -
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Residues in contact with ILE 696 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
692C ARG* 2.8 28.0 + - + +
693C GLN* 3.4 13.5 - - - +
694C TYR 3.0 0.2 - - - -
695C GLN* 1.3 74.1 - - - +
697C ASP* 1.3 56.5 + - - +
699C ALA* 2.8 6.9 + - - +
700C ILE* 2.7 52.5 + - + +
719C LEU* 5.0 2.0 - - + -
723C LEU* 4.1 7.6 - - + -
725C PHE* 3.3 16.8 - - + -
727C VAL* 3.3 45.8 - - + -
731C ASP* 5.8 5.6 - - + +
732C LEU* 5.2 4.3 - - + -
735C ARG* 3.5 25.6 - - + -
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Residues in contact with ASP 697 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
693C GLN 3.1 13.3 + - - +
694C TYR* 3.6 6.7 - - - +
696C ILE* 1.3 79.2 - - - +
698C ALA* 1.3 59.8 + - - +
700C ILE* 2.8 27.9 + - - +
701C VAL* 3.0 22.7 + - - +
735C ARG* 3.9 13.5 + - + +
738C SER* 4.2 2.1 + - - -
739C LEU* 3.2 14.6 - - - +
742C ARG* 2.7 30.7 + - - -
744C TYR* 5.9 0.5 - - - -
67D GLU* 3.9 10.0 - - - +
81D PHE* 3.5 20.8 - - + -
85D SER* 5.3 2.6 + - - -
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Residues in contact with ALA 698 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
694C TYR 2.6 21.4 + - - +
695C GLN* 4.4 3.1 - - - +
697C ASP* 1.3 78.9 + - - +
699C ALA* 1.3 58.5 + - - +
701C VAL* 4.0 7.0 + - - +
702C ARG* 3.3 31.4 + - - +
81D PHE* 4.3 4.9 - - + -
103D PHE* 3.7 33.8 - - + -
106D TYR* 4.0 10.1 - - - +
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Residues in contact with ALA 699 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
695C GLN 2.9 22.0 + - - +
696C ILE 2.8 4.5 + - - +
698C ALA* 1.3 75.7 - - - +
700C ILE* 1.3 68.6 + - - +
702C ARG* 3.6 8.3 + - - +
703C ILE* 3.4 26.7 + - - +
719C LEU* 4.4 10.1 - - + -
722C GLN* 3.6 21.9 + - - +
723C LEU* 3.8 18.6 - - + -
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Residues in contact with ILE 700 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
696C ILE* 2.7 44.8 + - + +
697C ASP* 3.2 9.0 - - - +
699C ALA* 1.3 77.1 - - - +
701C VAL* 1.3 66.1 + - - +
703C ILE* 3.0 7.2 + - - +
704C MET* 3.0 23.2 + - + +
715C LEU* 4.4 13.0 - - + -
719C LEU* 3.5 38.4 - - + -
732C LEU* 4.9 8.3 - - + -
735C ARG* 4.6 5.6 - - + -
736C ILE* 4.3 9.6 - - + -
739C LEU* 3.9 8.5 - - + -
745C MET* 3.1 32.3 - - + -
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Residues in contact with VAL 701 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
697C ASP* 3.4 22.4 - - - +
698C ALA* 4.1 6.1 - - - +
700C ILE* 1.3 80.6 - - - +
702C ARG* 1.3 64.4 + - - +
703C ILE 3.3 0.7 + - - -
704C MET* 3.3 15.6 + - - +
705C LYS* 3.3 14.4 + - + +
739C LEU* 3.6 20.9 - - + -
744C TYR* 3.8 35.0 - - + -
745C MET* 5.5 0.2 - - - -
757C TYR* 4.4 13.1 - - + +
85D SER* 5.6 2.9 - - - +
88D LEU* 6.5 1.1 - - + -
89D LYS* 5.7 2.2 - - + -
----------------------------------------------------------
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Residues in contact with ARG 702 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
695C GLN* 4.8 8.9 + - - -
698C ALA* 3.3 33.2 + - - +
699C ALA* 3.6 10.5 - - - +
700C ILE 3.2 0.4 + - - -
701C VAL* 1.3 80.9 - - - +
703C ILE* 1.3 62.2 + - + +
705C LYS* 3.7 9.8 + - - +
706C MET* 3.7 12.8 + - - +
722C GLN* 2.6 43.8 - - - +
102D GLU 5.9 0.2 + - - -
103D PHE* 4.8 11.9 - - - -
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Residues in contact with ILE 703 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
699C ALA 3.4 13.9 - - - +
700C ILE* 3.0 8.1 + - - +
702C ARG* 1.3 74.1 - - + +
704C MET* 1.3 59.8 + - + +
705C LYS 2.9 2.5 - - - -
706C MET* 2.7 36.2 + - + +
707C ARG* 3.2 31.8 + - + +
710C LEU* 4.5 16.4 - - + -
715C LEU* 5.8 5.2 - - + -
718C GLU* 3.7 31.6 - - + +
719C LEU* 4.5 13.9 - - + -
722C GLN* 3.4 27.1 - - - +
----------------------------------------------------------
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Residues in contact with MET 704 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
700C ILE* 3.0 12.2 + - + +
701C VAL* 3.3 10.5 + - - +
703C ILE* 1.3 77.8 - - + +
705C LYS* 1.3 58.1 + - - +
707C ARG 3.1 25.7 - - - +
708C LYS* 3.5 5.1 - - - +
710C LEU* 3.8 38.6 - - + -
715C LEU* 3.8 22.7 - - + -
744C TYR 5.3 1.6 - - - +
745C MET* 3.2 36.6 - - + +
755C TYR* 4.4 22.9 - - + +
757C TYR* 3.1 33.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 705 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
701C VAL* 3.3 5.8 + - + +
702C ARG* 3.9 11.9 - - - +
703C ILE 2.8 2.2 + - - -
704C MET* 1.3 75.4 - - - +
706C MET* 1.3 81.2 + - + +
707C ARG 3.4 0.2 + - - -
708C LYS* 3.2 38.7 - - - +
757C TYR* 3.2 27.3 - - + +
----------------------------------------------------------
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Residues in contact with MET 706 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
702C ARG 3.7 4.2 + - - +
703C ILE* 2.7 22.9 + - - +
705C LYS* 1.3 90.1 + - + +
707C ARG* 1.3 95.0 + - + +
708C LYS* 4.0 4.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 707 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
703C ILE* 3.2 30.4 + - + +
704C MET* 3.1 13.5 - - - +
706C MET* 1.3 114.2 - - + +
708C LYS* 1.3 59.1 + - - +
709C THR* 2.9 21.7 + - - +
710C LEU* 3.4 40.1 + - + +
718C GLU* 4.4 22.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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