Contacts of the helix formed by residues 771 - 825 (chain A) in PDB entry 2MYS
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 771 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95A THR* 3.3 0.2 + - - -
748A LEU* 5.5 1.6 - - + -
753A VAL* 4.9 16.2 - - + -
754A ASP* 5.0 7.6 - - + +
757A GLN* 4.0 25.8 - - + -
758A TYR* 4.6 11.7 - - + -
767A PHE* 3.0 42.8 - - + -
768A MLY 3.9 13.7 - - - +
769A ALA 2.7 14.9 + - - +
770A GLY* 1.3 73.1 - - - +
772A LEU* 1.3 52.8 - - - +
773A GLY 2.8 3.8 - - - -
774A LEU* 2.3 35.3 + - + +
775A LEU* 2.7 28.1 + - + +
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Residues in contact with LEU 772 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84A MLY 5.1 6.7 - - - -
85A TYR* 4.0 15.0 - - - +
93A MET 5.6 0.7 - - - +
95A THR* 3.5 15.8 + - - +
713A SER* 3.6 28.7 - - - +
715A VAL* 3.7 23.3 - - + -
720A PHE* 5.2 0.7 - - + -
724A TYR* 4.1 13.4 + - + +
767A PHE* 3.3 47.6 - - + -
768A MLY 4.8 0.4 + - - -
771A LEU* 1.3 78.1 - - - +
773A GLY* 1.3 62.4 + - - +
775A LEU* 3.1 12.1 + - + +
776A GLU* 3.1 29.7 + - - +
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Residues in contact with GLY 773 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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82A PRO* 4.8 10.3 - - - +
95A THR* 3.5 24.4 + - - +
96A HIS* 4.6 7.0 - - - -
770A GLY 4.0 4.0 - - - -
771A LEU 2.8 1.6 - - - -
772A LEU* 1.3 82.1 - - - +
774A LEU* 1.3 62.4 + - - +
776A GLU* 3.6 6.7 - - - +
777A GLU* 3.3 18.5 + - - +
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Residues in contact with LEU 774 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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752A ASP 5.8 1.3 - - - +
753A VAL* 4.1 17.0 - - + -
770A GLY 3.2 18.1 + - - +
771A LEU* 2.3 35.9 + - + +
773A GLY* 1.3 70.8 - - - +
775A LEU* 1.3 67.4 + - + +
777A GLU* 3.2 27.9 + - - +
778A MET* 3.3 38.4 + - + +
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Residues in contact with LEU 775 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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720A PHE* 4.1 32.3 - - + -
724A TYR* 3.1 27.6 - - + +
727A LEU* 4.1 9.0 - - + +
748A LEU* 5.1 7.0 - - + -
753A VAL* 4.1 25.6 - - + -
767A PHE* 4.2 15.9 - - + -
771A LEU* 2.7 23.2 + - + +
772A LEU* 3.6 13.5 - - + +
774A LEU* 1.3 72.2 - - + +
776A GLU* 1.3 65.4 + - - +
778A MET* 2.8 28.0 + - - +
779A ARG* 3.0 8.8 + - - +
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Residues in contact with GLU 776 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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82A PRO* 4.4 27.0 - - + +
84A MLY 4.5 19.4 - - + +
85A TYR* 5.3 2.2 - - - +
723A ARG* 3.3 29.7 + - - -
724A TYR* 2.7 31.8 + - - +
772A LEU 3.1 16.3 + - - +
773A GLY 3.6 5.8 - - - +
775A LEU* 1.3 76.2 - - - +
777A GLU* 1.4 51.5 + - - +
779A ARG* 2.8 19.3 + - - +
780A ASP* 2.4 47.1 + - - +
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Residues in contact with GLU 777 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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33A ASP* 5.3 0.3 - - - +
34A ALA* 3.3 26.2 + - + +
35A MLY 3.0 61.7 - - - +
773A GLY 3.3 8.9 + - - +
774A LEU* 3.2 26.0 + - - +
775A LEU 3.0 1.0 + - - -
776A GLU* 1.4 78.4 - - - +
778A MET* 1.3 68.0 + - + +
780A ASP* 2.9 21.0 + - - +
781A ASP* 3.0 20.7 + - - +
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Residues in contact with MET 778 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A MLY 5.9 6.1 - - - -
727A LEU* 3.1 28.9 - - + -
751A GLY* 5.4 7.6 - - - -
752A ASP 4.9 13.0 - - - +
753A VAL* 4.3 14.1 - - + +
774A LEU* 3.7 37.9 - - + +
775A LEU* 2.8 12.7 + - - +
777A GLU* 1.3 81.0 - - + +
779A ARG* 1.3 64.3 + - - +
781A ASP* 3.2 12.4 + - - +
782A MLY 3.0 24.8 + - + +
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Residues in contact with ARG 779 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A ASN* 5.3 3.4 + - - -
722A GLN* 4.9 2.8 + - - +
723A ARG* 2.9 70.1 + - - +
724A TYR* 4.8 7.6 - - + -
726A VAL* 5.6 10.0 - - + +
727A LEU* 4.5 9.4 - - + -
775A LEU 3.0 5.7 + - - +
776A GLU* 2.8 38.2 + - - +
778A MET* 1.3 82.1 - - - +
780A ASP* 1.3 59.3 + - - +
782A MLY 2.6 25.5 + - - -
783A LEU* 2.9 49.6 - - + +
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Residues in contact with ASP 780 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A MLY 5.1 4.0 - - - +
32A PHE* 4.0 34.5 + - - +
82A PRO* 5.7 2.9 - - - +
83A PRO* 5.4 1.6 - - - +
776A GLU* 2.4 28.5 + - - +
777A GLU* 2.9 14.3 + - + +
779A ARG* 1.3 80.3 + - - +
781A ASP* 1.3 66.1 + - - +
783A LEU* 3.0 16.2 + - - +
784A ALA* 3.4 8.8 + - - +
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Residues in contact with ASP 781 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35A MLY 5.1 6.9 - - - -
777A GLU* 3.0 20.8 + - - +
778A MET* 3.2 11.2 + - - +
780A ASP* 1.3 76.3 - - - +
782A MLY 1.3 69.0 + - + +
783A LEU 3.0 1.0 + - - -
784A ALA* 3.2 17.6 + - - +
785A GLU* 3.4 15.6 + - - +
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Residues in contact with MLY 782 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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726A VAL* 3.6 34.3 - - + +
727A LEU* 3.9 25.5 + - + +
728A ASN* 4.6 12.3 - - - -
778A MET 3.0 12.2 + - - +
779A ARG* 2.6 18.3 + - - +
781A ASP* 1.3 77.0 + - + +
783A LEU* 1.3 60.1 + - - +
785A GLU* 3.5 15.9 - - + +
786A ILE* 3.3 26.7 + - - +
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Residues in contact with LEU 783 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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726A VAL* 4.3 14.1 - - + -
779A ARG* 2.9 56.3 - - + +
780A ASP* 3.0 7.5 + - - +
782A MLY 1.3 86.0 + - + +
784A ALA* 1.3 58.9 + - - +
785A GLU 3.0 1.3 - - - -
786A ILE* 3.4 18.4 - - + -
787A ILE* 2.3 48.3 + - + +
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Residues in contact with ALA 784 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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780A ASP 3.4 8.1 + - - +
781A ASP* 3.6 11.9 - - - +
783A LEU* 1.3 74.7 - - - +
785A GLU* 1.3 71.8 + - - +
787A ILE* 4.7 3.1 - - - -
788A THR* 2.7 38.3 + - - +
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Residues in contact with GLU 785 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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781A ASP 3.4 10.0 + - - +
782A MLY 3.5 22.7 - - + +
784A ALA* 1.3 86.3 - - - +
786A ILE* 1.3 63.2 + - + +
788A THR* 4.2 1.2 - - - -
789A ALA* 3.2 23.1 + - - +
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Residues in contact with ILE 786 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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726A VAL* 4.4 21.1 - - + -
782A MLY 3.3 15.2 + - - +
783A LEU* 3.0 25.5 + - + +
785A GLU* 1.3 80.3 - - + +
787A ILE* 1.3 67.7 + - + +
789A ALA* 4.3 3.0 - - - +
790A THR* 3.1 26.9 + - - +
90C GLY* 3.6 32.8 - - - +
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Residues in contact with ILE 787 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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783A LEU* 2.3 39.2 + - + +
784A ALA* 3.9 2.7 - - - +
786A ILE* 1.3 73.6 - - + +
788A THR* 1.3 60.0 + - - +
789A ALA 3.0 1.8 - - - -
790A THR* 2.4 31.6 + - - -
791A GLN* 2.6 47.4 + - + +
110C VAL* 4.4 23.1 - - - +
114C LEU* 4.6 13.9 - - - +
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Residues in contact with THR 788 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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784A ALA* 2.7 27.7 + - - +
785A GLU* 4.2 0.9 - - - -
787A ILE* 1.3 76.1 - - - +
789A ALA* 1.3 60.8 + - - +
791A GLN* 3.2 10.3 + - - +
792A ALA* 3.2 23.9 + - - +
115C GLY* 3.7 23.2 + - - -
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Residues in contact with ALA 789 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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785A GLU 3.2 16.8 + - - +
786A ILE* 4.3 4.0 - - - +
787A ILE 3.0 0.8 - - - -
788A THR* 1.3 78.9 - - - +
790A THR* 1.3 61.6 + - - +
791A GLN 3.4 0.3 + - - -
792A ALA* 3.7 15.9 + - - +
793A ARG* 3.8 9.5 + - - +
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Residues in contact with THR 790 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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786A ILE* 3.1 17.9 + - - +
787A ILE* 2.4 25.9 + - - -
789A ALA* 1.3 72.3 - - - +
791A GLN* 1.3 60.3 + - + +
793A ARG* 4.1 4.2 + - + +
794A CYS* 2.7 41.1 + - - -
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Residues in contact with GLN 791 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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787A ILE* 2.6 40.6 + - + +
788A THR* 3.5 11.5 + - - +
789A ALA 3.1 0.2 - - - -
790A THR* 1.3 74.7 - - + +
792A ALA* 1.3 55.8 + - - +
794A CYS* 2.7 40.2 + - - +
795A ARG* 3.0 21.4 + - + +
111C LEU* 3.6 24.9 - - - +
116C GLU* 3.0 30.0 + - - -
117C LYS* 3.9 17.4 - - - +
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Residues in contact with ALA 792 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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788A THR 3.2 13.5 + - - +
789A ALA* 3.7 8.5 - - - +
791A GLN* 1.3 76.1 - - - +
793A ARG* 1.3 52.6 + - - +
795A ARG* 2.8 14.5 + - - +
796A GLY* 2.5 35.0 + - - -
42C THR* 4.6 20.9 - - - +
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Residues in contact with ARG 793 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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789A ALA 3.8 11.2 + - - +
790A THR* 4.4 5.2 - - + +
791A GLN 3.1 0.6 + - - -
792A ALA* 1.3 73.7 - - - +
794A CYS* 1.3 58.7 - - - +
796A GLY* 2.9 3.1 + - - -
797A PHE* 2.4 42.3 + - + +
800A ARG* 4.4 26.4 - - - +
82C GLY* 4.5 13.3 - - - +
147C MET* 3.6 27.5 - - - +
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Residues in contact with CYS 794 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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790A THR* 2.7 35.9 - - - -
791A GLN* 2.7 16.8 + - - +
793A ARG* 1.3 77.9 - - - +
795A ARG* 1.3 49.3 - - + +
797A PHE* 2.9 10.5 + - - +
798A LEU* 2.4 46.2 + - + +
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Residues in contact with ARG 795 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791A GLN* 3.0 29.6 + - + +
792A ALA* 2.8 15.0 + - - +
794A CYS* 1.3 70.9 - - + +
796A GLY* 1.3 69.0 + - - +
798A LEU* 2.9 16.3 + - - +
799A MET* 3.1 12.8 + - - +
43C ASN* 4.3 21.6 - - - +
116C GLU* 3.7 27.3 - - - +
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Residues in contact with GLY 796 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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792A ALA 2.5 16.6 + - - -
793A ARG* 3.2 3.4 - - - -
795A ARG* 1.3 78.9 - - - +
797A PHE* 1.3 53.1 + - - +
798A LEU 2.8 0.2 + - - -
799A MET* 2.7 23.2 + - - +
800A ARG* 3.1 25.6 + - - +
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Residues in contact with PHE 797 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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793A ARG* 2.4 26.7 + - + +
794A CYS* 3.0 8.3 - - - +
796A GLY* 1.3 70.9 - - - -
798A LEU* 1.3 90.2 + - + +
800A ARG* 3.2 31.6 + - - +
801A VAL* 3.4 28.7 + - + +
146C ILE* 4.1 23.8 - - - -
149C VAL* 4.1 27.1 - - - -
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Residues in contact with LEU 798 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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794A CYS* 2.4 26.5 + - + +
795A ARG* 3.3 11.9 - - - +
796A GLY 2.8 0.4 + - - -
797A PHE* 1.3 109.0 - - + +
799A MET* 1.3 63.2 + - + +
801A VAL* 3.4 13.3 + - + +
802A GLU* 3.7 10.0 + - - +
122C GLU* 4.4 22.0 - - - +
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Residues in contact with MET 799 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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795A ARG 3.1 7.2 + - - +
796A GLY* 2.7 11.9 + - - +
798A LEU* 1.3 71.2 - - + +
800A ARG* 1.3 58.0 + - - +
801A VAL 2.9 5.4 - - - -
802A GLU* 2.8 38.6 + - + +
803A TYR* 3.0 12.8 + - - +
806A MET* 5.6 8.1 - - - -
32C ASP* 3.7 28.7 - - - -
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Residues in contact with ARG 800 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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793A ARG* 4.4 24.4 + - - +
796A GLY* 3.1 14.3 + - - +
797A PHE* 3.2 50.2 + - - +
799A MET* 1.3 78.3 - - - +
801A VAL* 1.3 57.6 + - - +
803A TYR* 3.8 6.0 + - - +
804A ARG* 3.8 21.0 + - - +
36C ALA* 3.9 21.5 - - - +
40C ASN* 4.3 17.8 - - - +
149C VAL* 4.4 25.7 - - - +
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Residues in contact with VAL 801 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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797A PHE* 3.4 42.0 - - + +
798A LEU* 3.8 8.5 - - + +
799A MET 2.9 1.0 - - - -
800A ARG* 1.3 76.8 - - + +
802A GLU* 1.3 72.5 + - - +
803A TYR 3.3 0.4 - - - -
804A ARG* 3.4 13.4 + - + +
805A ALA* 3.3 18.8 + - + +
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Residues in contact with GLU 802 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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798A LEU 3.7 4.7 + - - +
799A MET* 2.8 33.2 + - + +
801A VAL* 1.3 88.3 - - - +
803A TYR* 1.3 66.6 + - - +
805A ALA* 3.2 11.3 + - - +
806A MET* 2.8 35.4 + - + +
809A ARG* 3.9 26.2 + - - -
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Residues in contact with TYR 803 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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799A MET 3.0 11.9 + - - +
800A ARG* 4.2 7.9 - - - +
801A VAL 3.3 0.4 - - - -
802A GLU* 1.3 77.5 - - - +
804A ARG* 1.4 56.3 + - - +
805A ALA 3.1 0.3 + - - -
806A MET* 3.4 19.8 - - + +
807A VAL* 2.9 57.1 + - + +
13C ALA* 3.8 29.2 + - - -
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Residues in contact with ARG 804 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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800A ARG 3.8 11.8 + - - +
801A VAL* 3.4 20.9 + - + +
802A GLU 3.3 0.6 - - - -
803A TYR* 1.4 77.2 - - - +
805A ALA* 1.3 52.5 + - + +
807A VAL* 4.6 5.1 - - - +
808A GLU* 2.8 44.3 + - - +
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Residues in contact with ALA 805 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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801A VAL* 3.3 11.8 + - + +
802A GLU* 3.2 21.7 + - - +
803A TYR 3.1 0.8 - - - -
804A ARG* 1.3 77.2 - - - +
806A MET* 1.3 66.4 + - - +
807A VAL 3.1 1.6 - - - -
808A GLU* 3.1 13.0 + - - +
809A ARG* 3.0 40.5 + - + +
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Residues in contact with MET 806 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799A MET* 5.6 8.1 - - - -
802A GLU* 2.8 36.2 + - + +
803A TYR* 3.4 24.2 - - + +
805A ALA* 1.3 74.4 - - - +
807A VAL* 1.3 61.7 + - + +
809A ARG* 2.9 40.3 - - - +
810A ARG* 3.1 8.5 + - - +
17C PHE* 4.6 20.9 - - - +
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Residues in contact with VAL 807 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
803A TYR* 2.9 48.4 + - + +
804A ARG* 4.6 4.5 - - - +
806A MET* 1.3 80.4 - - + +
808A GLU* 1.3 67.6 + - + +
810A ARG* 2.8 29.2 - - + +
811A GLU* 5.5 0.2 - - - +
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Residues in contact with GLU 808 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804A ARG* 2.8 29.0 + - - +
805A ALA* 3.1 15.3 + - - +
807A VAL* 1.3 79.1 - - + +
809A ARG* 1.3 63.6 + - + +
810A ARG* 3.0 1.7 + - - +
811A GLU* 3.8 18.0 + - - +
812A SER* 4.5 2.1 + - - -
----------------------------------------------------------
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Residues in contact with ARG 809 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802A GLU* 3.9 20.9 + - - -
805A ALA* 3.0 28.9 + - - +
806A MET* 2.9 27.7 - - - +
808A GLU* 1.3 78.8 - - + +
810A ARG* 1.3 64.6 + - - +
811A GLU 3.0 2.0 + - - -
812A SER* 3.0 19.9 + - - +
813A ILE* 3.1 30.4 + - + +
----------------------------------------------------------
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Residues in contact with ARG 810 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806A MET 3.1 6.7 + - - +
807A VAL* 2.8 27.2 + - + +
808A GLU 3.0 0.2 + - - -
809A ARG* 1.3 78.5 - - - +
811A GLU* 1.3 65.8 + - + +
813A ILE* 3.8 13.9 - - - +
814A PHE* 3.5 45.4 - - - -
----------------------------------------------------------
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Residues in contact with GLU 811 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
807A VAL 5.5 0.3 - - - +
808A GLU 3.8 10.7 + - - +
809A ARG 3.2 0.2 - - - -
810A ARG* 1.3 79.9 - - + +
812A SER* 1.3 72.1 + - - +
813A ILE 2.7 7.7 + - - -
814A PHE* 2.8 27.7 + - + +
815A CYS* 2.9 13.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 812 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808A GLU 4.5 1.8 + - - -
809A ARG* 3.0 13.6 + - - -
811A GLU* 1.3 85.3 - - - +
813A ILE* 1.3 59.7 + - - +
815A CYS* 3.5 7.4 - - - +
816A ILE* 2.9 30.3 + - - +
100B ALA* 3.5 24.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 813 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809A ARG* 3.2 32.1 - - + +
810A ARG* 3.8 9.0 - - - +
811A GLU 2.7 1.2 + - - -
812A SER* 1.3 77.0 - - - +
814A PHE* 1.3 55.0 + - + +
816A ILE* 2.4 16.5 + - + +
817A GLN* 2.3 60.4 + - + +
----------------------------------------------------------
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Residues in contact with PHE 814 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
810A ARG* 3.5 52.7 - - - -
811A GLU* 2.8 19.6 + - + +
813A ILE* 1.3 73.3 - - - +
815A CYS* 1.3 57.2 + - - +
817A GLN* 2.7 34.6 + - - -
818A TYR* 2.7 55.5 + + + +
125B GLY* 3.5 21.8 - - - -
----------------------------------------------------------
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Residues in contact with CYS 815 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811A GLU 2.9 7.2 + - - +
812A SER* 3.5 13.9 - - - +
814A PHE* 1.3 81.4 - - - +
816A ILE* 1.3 68.4 + - - +
818A TYR* 5.4 1.8 - - - -
819A ASN* 2.9 44.7 + - - +
97B ILE* 4.4 21.5 - - - -
----------------------------------------------------------
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Residues in contact with ILE 816 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
812A SER 2.9 22.9 - - - +
813A ILE* 2.4 22.5 + - + +
815A CYS* 1.3 82.8 - - + +
817A GLN* 1.3 64.2 - - - +
819A ASN* 3.7 3.5 - - - +
820A VAL* 3.3 29.3 + - + +
100B ALA* 4.1 9.0 - - - +
101B PHE* 4.1 25.8 - - - +
----------------------------------------------------------
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Residues in contact with GLN 817 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
813A ILE* 2.3 41.4 + - + +
814A PHE* 2.7 21.4 + - - +
816A ILE* 1.3 68.5 - - - +
818A TYR* 1.3 73.9 + - + +
820A VAL* 3.3 10.0 + - - +
821A ARG* 3.6 26.9 + - - +
121B LEU* 4.1 16.0 - - - +
125B GLY* 2.8 38.5 + - - +
126B GLY* 3.8 14.8 - - - +
----------------------------------------------------------
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Residues in contact with TYR 818 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814A PHE* 2.7 52.8 + + + +
815A CYS* 4.6 1.6 - - - +
817A GLN* 1.3 77.4 - - + +
819A ASN* 1.3 64.6 + - - +
821A ARG* 3.0 46.2 + - - +
822A SER* 3.2 13.0 + - - -
90B GLY* 4.5 15.3 - - - +
----------------------------------------------------------
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Residues in contact with ASN 819 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
815A CYS* 2.9 39.8 + - - +
816A ILE* 3.7 4.7 - - - +
818A TYR* 1.3 80.1 - - - +
820A VAL* 1.3 60.5 + - + +
822A SER* 3.4 17.6 - - - -
823A PHE* 4.0 5.2 + - - +
91B ALA* 3.5 20.7 + - - +
92B ASP* 4.0 21.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 820 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
816A ILE* 3.3 23.6 + - + +
817A GLN* 3.7 7.4 - - - +
818A TYR 3.1 0.4 - - - -
819A ASN* 1.3 73.4 - - + +
821A ARG* 1.3 74.3 + - + +
822A SER 3.1 1.6 - - - -
823A PHE* 3.0 19.9 + - + +
824A MET* 3.1 27.8 + - + +
----------------------------------------------------------
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Residues in contact with ARG 821 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817A GLN* 3.6 25.9 + - - +
818A TYR* 3.0 48.5 + - + +
820A VAL* 1.3 85.6 - - + +
822A SER* 1.4 66.4 + - - +
824A MET* 3.1 14.2 + - + +
825A ASN* 3.1 20.3 - - - +
128B PHE* 4.0 24.2 - - - +
----------------------------------------------------------
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Residues in contact with SER 822 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
818A TYR 3.2 4.7 + - - -
819A ASN 3.4 15.5 - - - -
820A VAL 3.1 0.2 - - - -
821A ARG* 1.4 72.1 - - - +
823A PHE* 1.3 56.9 + - - +
825A ASN* 2.6 40.4 + - - +
826A VAL* 2.9 15.4 + - - +
88B LEU* 4.2 11.8 + - - -
90B GLY* 4.2 10.4 + - - -
91B ALA* 3.6 23.6 + - - -
----------------------------------------------------------
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Residues in contact with PHE 823 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
819A ASN 4.3 5.8 - - - +
820A VAL* 3.2 13.9 - - + +
822A SER* 1.3 81.0 - - - +
824A MET* 1.3 78.4 + - + +
826A VAL* 4.3 7.9 - - + +
827A MLY 2.9 76.5 + - + +
836A PHE* 5.2 14.4 - + - -
157B ILE* 3.7 30.3 - - - +
----------------------------------------------------------
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Residues in contact with MET 824 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
820A VAL* 3.1 27.0 + - + +
821A ARG* 3.2 13.5 - - + +
823A PHE* 1.3 88.8 - - + +
825A ASN* 1.3 63.7 + - - +
827A MLY 3.4 50.4 - - - +
828A HIS* 4.9 8.1 - - - +
----------------------------------------------------------
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Residues in contact with ASN 825 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
821A ARG* 3.1 14.6 - - - +
822A SER* 2.6 19.3 + - - +
824A MET* 1.3 79.8 - - - +
826A VAL* 1.3 66.3 + - + +
827A MLY 3.6 0.2 - - - -
828A HIS* 3.8 9.8 + - - +
829A TRP* 4.3 5.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il