Contacts of the helix formed by residues 237 - 268 (chain F) in PDB entry 2NN6


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with TRP 237 (chain F).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    236E  VAL*     3.2    40.6    -      -       +      +
    237E  THR      4.3     0.6    +      -       -      -
    239E  MET*     4.9    18.1    -      -       +      +
    256E  MET*     4.6     9.2    -      -       +      -
    187F  LEU*     3.4     6.5    -      -       +      -
    209F  ALA*     3.4    26.0    -      -       +      -
    210F  GLY      5.5     2.5    -      -       -      -
    211F  LEU*     5.6    16.4    -      -       +      +
    227F  GLY*     5.6     2.7    +      -       -      -
    228F  SER      4.9     1.3    -      -       -      -
    229F  GLY*     3.7    25.5    -      -       -      +
    230F  GLU      3.8     2.9    -      -       -      -
    231F  GLY      2.8    30.3    -      -       -      -
    233F  LEU      3.3     6.6    +      -       -      -
    234F  THR      3.7    12.8    -      -       -      +
    235F  GLU      2.6     5.9    +      -       -      -
    236F  SER*     1.3    75.6    -      -       -      +
    238F  ALA*     1.3    52.4    +      -       -      +
    239F  GLU*     2.4    49.1    +      -       +      +
    240F  ALA*     2.9    16.1    +      -       +      +
    241F  VAL*     3.1    13.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 238 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253E  PHE*     3.6    23.8    -      -       +      -
    256E  MET*     4.3     4.9    -      -       -      -
    235F  GLU*     2.6    22.9    +      -       +      +
    237F  TRP*     1.3    69.8    -      -       -      +
    239F  GLU*     1.3    55.9    +      -       -      +
    240F  ALA      3.4     0.4    -      -       -      -
    241F  VAL*     3.5    15.8    -      -       -      +
    242F  ARG*     2.8    47.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 239 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    185F  LEU*     3.3    15.6    -      -       -      +
    187F  LEU*     2.7    46.1    -      -       -      +
    195F  TRP*     4.6    25.9    -      -       +      +
    236F  SER      2.8    26.0    +      -       -      +
    237F  TRP*     2.4    25.2    +      -       +      +
    238F  ALA*     1.3    74.3    -      -       -      +
    240F  ALA*     1.3    83.7    +      -       -      +
    242F  ARG*     4.6     1.1    -      -       -      +
    243F  LEU*     2.9    28.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 240 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    185F  LEU*     3.3    27.2    -      -       +      +
    187F  LEU*     5.7     0.4    -      -       +      -
    211F  LEU*     3.6    29.6    -      -       +      -
    213F  VAL*     5.3     3.5    -      -       +      +
    237F  TRP*     2.9     5.3    +      -       +      +
    239F  GLU*     1.3    97.3    -      -       -      +
    241F  VAL*     1.3    55.3    +      -       +      +
    242F  ARG      3.3     0.4    -      -       -      -
    243F  LEU      3.1     1.2    -      -       -      -
    244F  GLY*     2.5    36.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 241 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    249E  PRO*     5.1     3.8    -      -       +      -
    252E  ILE*     3.3    22.2    -      -       +      -
    253E  PHE*     3.1    32.6    -      -       +      -
    256E  MET*     3.4    21.5    -      -       +      -
    211F  LEU*     6.4     2.2    -      -       +      -
    213F  VAL*     5.7     5.4    -      -       -      -
    225F  LEU*     5.5     7.0    -      -       +      -
    237F  TRP*     3.1    21.3    -      -       +      +
    238F  ALA*     3.5     3.6    -      -       -      -
    240F  ALA*     1.3    78.8    -      -       +      +
    242F  ARG*     1.3    61.2    +      -       -      +
    244F  GLY*     3.5    10.4    +      -       -      -
    245F  LEU*     3.8    13.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 242 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253E  PHE*     3.4    22.2    -      -       +      -
    238F  ALA*     2.8    33.6    +      -       -      +
    239F  GLU      4.6     0.7    -      -       -      +
    241F  VAL*     1.3    73.2    -      -       -      +
    243F  LEU*     1.3    60.1    +      -       -      +
    244F  GLY      2.8     9.3    +      -       -      -
    245F  LEU*     3.6    13.8    +      -       -      +
    246F  GLU*     3.9     7.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 243 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33F  PRO      4.3     3.6    -      -       -      +
     34F  THR*     3.5    16.8    -      -       +      -
    183F  CYS*     5.4     0.5    -      -       -      -
    185F  LEU*     3.1    37.0    -      -       +      -
    195F  TRP*     5.6     5.8    -      -       +      -
    196F  LEU      3.7    11.2    -      -       -      +
    197F  LEU*     3.1    28.2    -      -       +      +
    239F  GLU*     2.9    19.9    +      -       -      +
    240F  ALA      3.0     1.9    +      -       -      -
    242F  ARG*     1.3    77.5    -      -       -      +
    244F  GLY*     1.3    58.8    +      -       -      +
    246F  GLU*     3.1    33.6    -      -       +      +
    247F  GLY      4.2     1.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLY 244 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    183F  CYS*     4.2    14.1    -      -       -      -
    185F  LEU*     4.5     3.8    -      -       -      -
    213F  VAL*     5.3     9.9    -      -       -      -
    215F  LEU*     6.4     1.6    -      -       -      -
    240F  ALA      2.5    17.8    +      -       -      -
    241F  VAL*     3.5     4.7    +      -       -      -
    242F  ARG      2.8     3.6    -      -       -      -
    243F  LEU*     1.3    73.1    -      -       -      +
    245F  LEU*     1.3    57.0    +      -       -      -
    246F  GLU      2.9    10.4    +      -       -      -
    247F  GLY*     3.1    12.3    +      -       -      -
    248F  CYS*     3.8     9.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 245 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    249E  PRO*     3.3    37.5    -      -       +      -
    253E  PHE*     5.8     1.8    -      -       +      -
    215F  LEU*     4.0    15.9    -      -       +      -
    220F  ASN*     4.4    18.2    -      -       +      +
    241F  VAL      3.8    12.2    +      -       -      +
    242F  ARG*     3.6     8.5    +      -       -      +
    244F  GLY*     1.3    73.5    -      -       -      +
    246F  GLU*     1.3    64.3    +      -       -      +
    247F  GLY      3.5     0.2    -      -       -      -
    248F  CYS*     3.2    20.8    -      -       -      -
    249F  GLN*     3.2    29.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 246 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34F  THR*     2.9    32.6    -      -       -      +
    197F  LEU*     2.8    29.7    -      -       -      +
    242F  ARG      3.9     6.4    +      -       -      +
    243F  LEU*     3.1    18.7    -      -       +      +
    244F  GLY      2.9     1.0    +      -       -      -
    245F  LEU*     1.3    80.3    -      -       -      +
    247F  GLY*     1.3    57.5    +      -       -      +
    249F  GLN*     3.8     2.9    -      -       -      +
    250F  ARG*     2.8    41.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 247 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    181F  VAL*     4.8     2.7    -      -       -      -
    183F  CYS*     4.5    15.5    -      -       -      -
    197F  LEU*     5.3     5.3    -      -       -      +
    243F  LEU      4.2     2.6    +      -       -      -
    244F  GLY      3.1     8.0    +      -       -      -
    246F  GLU*     1.3    80.9    -      -       -      +
    248F  CYS*     1.3    51.7    +      -       -      +
    250F  ARG*     2.9    13.9    -      -       -      +
    251F  LEU*     2.7    38.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with CYS 248 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    181F  VAL*     3.4    41.8    -      -       +      +
    183F  CYS*     4.8     3.3    -      -       -      -
    215F  LEU*     3.8    25.6    -      -       +      +
    217F  PRO*     4.4     2.2    -      -       +      -
    244F  GLY      3.8     4.8    +      -       -      +
    245F  LEU*     3.2    25.4    -      -       -      -
    247F  GLY*     1.3    70.1    -      -       -      +
    249F  GLN*     1.3    86.5    +      -       -      +
    252F  TYR*     2.4    41.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 249 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    215F  LEU*     5.1     1.4    -      -       -      +
    217F  PRO*     3.3    38.0    +      -       -      +
    218F  VAL*     4.2     1.0    -      -       -      +
    220F  ASN*     5.2     3.0    -      -       -      +
    245F  LEU*     3.2    40.7    +      -       -      +
    246F  GLU*     3.8     3.1    -      -       -      +
    248F  CYS*     1.3    88.7    -      -       -      +
    250F  ARG*     1.3    67.0    +      -       -      +
    252F  TYR*     3.3     8.8    -      -       +      +
    253F  PRO*     3.1    13.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 250 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34F  THR      3.0    24.2    +      -       -      -
     35F  ARG*     3.8     2.4    +      -       -      +
     36F  LEU*     2.8    56.4    +      -       -      +
    197F  LEU*     5.1     5.5    -      -       -      +
    246F  GLU*     2.8    26.5    +      -       +      +
    247F  GLY*     2.9    19.3    -      -       -      +
    248F  CYS      2.9     0.2    -      -       -      -
    249F  GLN*     1.3    77.3    -      -       -      +
    251F  LEU*     1.3    58.9    +      -       +      +
    253F  PRO*     2.9    21.3    -      -       -      +
    254F  VAL*     4.3     3.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 251 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36F  LEU*     3.4    24.9    -      -       +      -
     39F  VAL*     3.3    44.4    -      -       +      -
    181F  VAL*     5.3     5.2    -      -       +      -
    247F  GLY      2.7    16.8    +      -       -      +
    248F  CYS      4.6     0.2    -      -       -      +
    250F  ARG*     1.3    75.3    -      -       +      +
    252F  TYR*     1.3    52.7    +      -       -      +
    253F  PRO*     2.5    20.4    -      -       -      -
    254F  VAL*     2.6    42.0    +      -       +      -
    255F  LEU*     2.7    20.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 252 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    179F  LEU*     3.6    20.4    -      -       +      -
    217F  PRO*     3.2    33.0    -      -       +      -
    218F  VAL*     2.8    24.4    -      -       +      +
    248F  CYS      2.4    33.9    +      -       -      +
    249F  GLN*     3.3    13.7    -      -       -      +
    251F  LEU*     1.3    67.2    -      -       -      +
    253F  PRO*     1.3    61.7    -      -       +      +
    255F  LEU*     2.8    30.1    -      -       +      +
    256F  GLN*     3.0    32.0    +      -       -      +
     11I  GLY*     2.6    32.8    +      -       -      -
     12I  GLU*     4.3     0.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 253 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    249F  GLN      3.1    10.1    -      -       -      +
    250F  ARG      2.9    21.5    -      -       -      +
    251F  LEU      2.5     0.4    -      -       -      -
    252F  TYR*     1.3    90.9    -      -       +      +
    254F  VAL*     1.3    66.2    +      -       +      +
    255F  LEU      2.5    17.7    +      -       -      -
    256F  GLN*     2.7    32.6    +      -       +      +
    257F  GLN*     2.8    28.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 254 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39F  VAL*     3.5    37.4    -      -       +      +
     41F  ALA*     5.5     2.3    -      -       -      +
    250F  ARG      4.3     1.8    -      -       -      +
    251F  LEU*     2.6    38.8    +      -       +      +
    253F  PRO*     1.3    77.7    -      -       +      +
    255F  LEU*     1.3    58.0    +      -       -      +
    257F  GLN*     3.0    18.1    +      -       -      +
    258F  SER*     3.7    17.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 255 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41F  ALA*     6.2     0.7    -      -       -      -
    163F  THR*     5.5    13.0    -      -       +      -
    167F  LEU*     4.6     9.0    -      -       +      +
    179F  LEU*     3.3    32.5    -      -       +      -
    180F  VAL      5.6     0.2    -      -       -      +
    181F  VAL*     3.4    33.2    -      -       +      -
    251F  LEU*     2.7    12.3    +      -       +      +
    252F  TYR*     2.8    42.4    -      -       +      +
    253F  PRO      2.5     7.1    +      -       -      -
    254F  VAL*     1.3    71.5    -      -       -      +
    256F  GLN*     1.3    75.0    +      -       -      +
    257F  GLN      2.8     9.9    +      -       -      -
    258F  SER*     3.0    22.5    +      -       -      -
    259F  LEU*     3.5     7.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 256 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    252F  TYR*     3.0    46.6    +      -       +      +
    253F  PRO*     2.7    30.9    +      -       +      +
    255F  LEU*     1.3    85.1    -      -       +      +
    257F  GLN*     1.3    64.0    +      -       +      +
    259F  LEU*     4.0     4.3    +      -       -      +
    260F  VAL*     3.2    27.9    +      -       -      +
      9I  ILE*     3.4    38.4    -      -       +      +
     12I  GLU*     3.4    19.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 257 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    253F  PRO*     2.8    34.1    +      -       +      +
    254F  VAL*     3.0    30.0    +      -       -      +
    255F  LEU      2.8     1.2    +      -       -      -
    256F  GLN*     1.3    83.5    +      -       +      +
    258F  SER*     1.3    63.9    -      -       -      +
    259F  LEU      3.1     2.1    +      -       -      -
    260F  VAL*     3.3     6.7    +      -       -      +
    261F  ARG*     3.1    20.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 258 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41F  ALA*     3.0    45.4    -      -       -      +
     42F  ARG*     5.0     1.3    -      -       -      -
     43F  ALA*     4.5     8.3    +      -       -      +
    167F  LEU*     4.2    10.7    -      -       -      +
    254F  VAL      3.7     9.8    +      -       -      -
    255F  LEU*     3.0    14.5    +      -       -      -
    257F  GLN*     1.3    77.9    -      -       -      +
    259F  LEU*     1.3    61.0    +      -       -      +
    261F  ARG*     3.6    11.8    -      -       -      +
    262F  ALA*     3.5    19.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 259 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43F  ALA*     5.4     0.9    -      -       -      -
    166F  ALA      5.8     0.2    -      -       -      +
    167F  LEU*     4.6    19.7    -      -       +      +
    170F  ALA*     3.7    27.4    -      -       +      +
    171F  ASP*     4.5    20.0    -      -       +      +
    179F  LEU*     5.3     2.2    -      -       +      -
    255F  LEU      3.5     5.8    +      -       -      +
    256F  GLN      4.0     8.5    -      -       -      +
    257F  GLN      3.1     0.6    -      -       -      -
    258F  SER*     1.3    80.4    +      -       -      +
    260F  VAL*     1.3    66.1    +      -       +      +
    262F  ALA*     3.3     5.2    +      -       -      +
    263F  ALA*     2.7    45.7    +      -       +      +
      8I  CYS      4.9     2.0    -      -       -      +
      9I  ILE*     3.1    32.3    -      -       +      -
     38I  ALA*     4.4    10.8    -      -       +      -
     39I  GLY      4.7     5.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 260 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    256F  GLN      3.2    19.5    -      -       -      +
    257F  GLN*     3.3     6.6    +      -       -      +
    259F  LEU*     1.3    81.7    -      -       +      +
    261F  ARG*     1.3    58.7    +      -       -      +
    263F  ALA*     3.7     6.3    -      -       -      -
    264F  ARG*     2.5    51.3    +      -       +      +
      7I  TYR*     3.2    39.0    -      -       +      -
      8I  CYS      4.6     9.0    -      -       -      +
      9I  ILE*     4.5    13.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 261 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41F  ALA      5.6     5.8    +      -       -      -
     42F  ARG*     5.7    11.6    -      -       +      +
    257F  GLN      3.1    13.2    +      -       -      +
    258F  SER*     3.6    15.7    -      -       -      +
    259F  LEU      3.2     0.2    -      -       -      -
    260F  VAL*     1.3    76.5    -      -       -      +
    262F  ALA*     1.3    58.4    +      -       -      +
    264F  ARG*     3.4    10.1    -      -       -      +
    265F  ARG*     3.0    62.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 262 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42F  ARG*     5.9     4.0    -      -       +      -
     43F  ALA      2.8    33.0    -      -       -      +
     44F  GLY*     4.7     2.9    -      -       -      -
    171F  ASP*     4.6     5.4    -      -       -      +
    258F  SER      3.5     7.3    +      -       -      +
    259F  LEU      3.3     6.3    +      -       -      +
    260F  VAL      3.2     0.2    -      -       -      -
    261F  ARG*     1.3    77.6    -      -       -      +
    263F  ALA*     1.3    64.9    +      -       -      +
    264F  ARG      2.6     6.6    +      -       -      -
    265F  ARG*     2.7     9.0    +      -       -      +
    266F  ARG*     2.7    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 263 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    171F  ASP*     5.5     1.4    +      -       -      -
    259F  LEU*     2.7    34.9    +      -       +      +
    260F  VAL*     3.6    10.3    -      -       -      +
    262F  ALA*     1.3    71.1    -      -       -      +
    264F  ARG*     1.3    53.0    +      -       -      +
    266F  ARG*     3.9     7.9    -      -       -      +
    267F  GLY*     2.6    27.9    +      -       -      -
      7I  TYR*     3.0     8.0    +      -       -      -
     39I  GLY*     3.7    27.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 264 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    260F  VAL*     2.5    33.6    +      -       -      +
    261F  ARG*     3.4     9.4    -      -       -      +
    262F  ALA      2.6     0.8    +      -       -      -
    263F  ALA*     1.3    71.5    -      -       -      +
    265F  ARG*     1.3    69.4    +      -       -      +
    266F  ARG      2.9     1.6    -      -       -      -
    267F  GLY      2.7     0.9    +      -       -      -
    268F  ALA*     2.4    47.5    +      -       +      +
      6I  ARG      6.0     2.0    -      -       -      +
      7I  TYR*     2.8    34.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 265 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    261F  ARG*     3.0    53.5    +      -       +      +
    262F  ALA*     2.7    12.5    +      -       -      +
    264F  ARG*     1.3    81.0    -      -       -      +
    266F  ARG*     1.3    57.9    +      -       -      +
    268F  ALA*     4.5     4.2    -      -       -      +
    269F  ALA*     3.0    24.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 266 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44F  GLY*     3.7    33.0    +      -       -      -
     46F  LEU      4.5     6.1    +      -       -      -
     49F  ALA      5.2     1.2    +      -       -      -
     50F  LYS      3.9    14.7    +      -       -      -
     52F  SER*     4.7     0.8    +      -       -      -
    171F  ASP*     3.4    29.9    +      -       -      -
    172F  ALA*     5.2     0.6    +      -       -      +
    262F  ALA*     2.7    21.2    +      -       -      +
    263F  ALA*     3.9     6.7    -      -       -      +
    265F  ARG*     1.3    73.2    -      -       -      +
    267F  GLY*     1.3    61.3    +      -       -      +
    269F  ALA*     2.8    26.8    +      -       +      +
    270F  ALA*     3.3     7.6    +      -       -      +
     58I  GLU*     5.0    18.5    +      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 267 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    263F  ALA      2.6    25.2    +      -       -      -
    264F  ARG      2.7     2.4    +      -       -      -
    266F  ARG*     1.3    75.5    -      -       -      +
    268F  ALA*     1.3    56.9    +      -       -      -
    270F  ALA      3.8    15.1    +      -       -      -
      7I  TYR*     3.1    10.5    -      -       -      -
     40I  CYS*     6.4     1.6    -      -       -      -
     58I  GLU*     6.1     4.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 268 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    264F  ARG*     2.4    43.8    +      -       +      +
    265F  ARG*     4.5     4.7    -      -       -      +
    267F  GLY*     1.3    66.5    -      -       -      -
    269F  ALA*     1.3    63.7    +      -       -      +
    270F  ALA*     3.4     2.1    +      -       -      -
      7I  TYR*     3.6     2.3    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il